Wall clock time and date at job start Tue Mar 31 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.53006 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46884 * 55.00564 * 4 3 2 6 6 C 1.52997 * 109.47127 * 294.99812 * 4 3 2 7 7 C 1.52999 * 109.46623 * 174.99875 * 4 3 2 8 8 C 1.50707 * 109.47009 * 184.99986 * 7 4 3 9 9 O 1.20823 * 119.99480 * 359.97438 * 8 7 4 10 10 O 1.34226 * 120.00081 * 180.02562 * 8 7 4 11 11 C 1.45200 * 116.99779 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47434 * 329.99696 * 11 10 8 13 13 C 1.50708 * 109.46769 * 210.00115 * 11 10 8 14 14 H 1.07990 * 120.00124 * 359.97438 * 13 11 10 15 15 C 1.37881 * 119.99581 * 180.02562 * 13 11 10 16 16 N 1.31519 * 120.00116 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99754 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47256 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47024 * 119.99710 * 17 15 13 20 20 H 1.48496 * 109.47009 * 239.99711 * 17 15 13 21 21 C 1.50697 * 109.47292 * 90.00098 * 11 10 8 22 22 C 1.34512 * 125.79341 * 219.71535 * 21 11 10 23 23 C 1.41373 * 106.84448 * 179.88558 * 22 21 11 24 24 C 1.34513 * 106.84117 * 0.37320 * 23 22 21 25 25 O 1.34302 * 108.41957 * 359.76964 * 24 23 22 26 26 H 1.09001 * 109.47165 * 300.00246 * 1 2 3 27 27 H 1.09009 * 109.47102 * 59.99918 * 1 2 3 28 28 H 1.08998 * 109.47611 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47165 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46746 * 120.00402 * 2 1 3 31 31 H 1.09001 * 109.47273 * 59.99820 * 3 2 1 32 32 H 1.09000 * 109.47001 * 299.99440 * 3 2 1 33 33 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 35 35 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 36 36 H 1.08994 * 109.47465 * 305.00017 * 7 4 3 37 37 H 1.08998 * 109.47565 * 65.00449 * 7 4 3 38 38 H 0.97004 * 119.99661 * 179.97438 * 16 15 13 39 39 H 1.08009 * 126.57615 * 0.02562 * 22 21 11 40 40 H 1.08005 * 126.58215 * 180.16417 * 23 22 21 41 41 H 1.07997 * 125.79264 * 179.74655 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 4.0801 2.8794 -0.1251 8 6 5.5821 2.8704 -0.2480 9 8 6.1828 1.8221 -0.2357 10 8 6.2524 4.0268 -0.3700 11 6 7.6975 3.9422 -0.4833 12 1 8.0534 3.0639 0.0551 13 6 8.3210 5.1805 0.1078 14 1 7.6939 5.9537 0.5262 15 6 9.6921 5.3265 0.1133 16 7 10.4557 4.3850 -0.3968 17 14 10.4648 6.8615 0.8453 18 1 9.3965 7.7615 1.3489 19 1 11.3596 6.4785 1.9669 20 1 11.2527 7.5649 -0.1985 21 6 8.0819 3.8308 -1.9362 22 6 9.0556 3.0479 -2.4345 23 6 9.0696 3.2520 -3.8334 24 6 8.1092 4.1537 -4.1053 25 8 7.5142 4.5007 -2.9524 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.1695 0.8333 1.3090 34 1 3.7160 -0.1908 1.3978 35 1 3.7157 1.4226 2.1499 36 1 3.6458 3.3429 -1.0109 37 1 3.7914 3.4462 0.7600 38 1 11.4203 4.4879 -0.3932 39 1 9.7012 2.3881 -1.8738 40 1 9.7277 2.7778 -4.5465 41 1 7.8592 4.5343 -5.0846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346720804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:44 Heat of formation + Delta-G solvation = -116.192909 kcal Electronic energy + Delta-G solvation = -22209.089999 eV Core-core repulsion = 18861.403014 eV Total energy + Delta-G solvation = -3347.686985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.18689 -41.35213 -38.34391 -37.09064 -35.29021 -33.62739 -33.55645 -31.64871 -29.32795 -28.43046 -27.45620 -25.13511 -23.30829 -22.40620 -21.81929 -21.11318 -20.68910 -19.05695 -18.45993 -18.16327 -17.20990 -17.03435 -16.57528 -16.35224 -16.12676 -15.35867 -14.93995 -14.68115 -14.50736 -14.23527 -13.96888 -13.52533 -13.48265 -13.28738 -13.10365 -13.06482 -12.90514 -12.80217 -12.60906 -12.36358 -12.20075 -11.98175 -11.82763 -11.75648 -11.50113 -11.36179 -11.25601 -11.02664 -10.82091 -10.53275 -9.12865 -8.25083 -6.53740 1.08991 1.34566 1.38777 1.40438 1.53264 1.90124 2.12983 2.40483 2.42303 3.00056 3.71920 3.80740 3.94931 4.14118 4.27309 4.30084 4.38824 4.44100 4.51555 4.58311 4.65607 4.71102 4.73403 4.80617 4.93369 4.98384 5.07402 5.13908 5.18372 5.25772 5.30221 5.33185 5.42126 5.43953 5.46743 5.54967 5.59122 5.68581 5.84226 5.99921 6.47865 6.58886 6.96486 7.19097 8.72010 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020739 B = 0.004360 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.769078 B = 6420.132370 C = 7200.062712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.076 4.076 5 H 0.059 0.941 6 C -0.154 4.154 7 C -0.103 4.103 8 C 0.442 3.558 9 O -0.543 6.543 10 O -0.362 6.362 11 C 0.300 3.700 12 H 0.041 0.959 13 C -0.556 4.556 14 H 0.074 0.926 15 C 0.023 3.977 16 N -0.892 5.892 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.277 1.277 21 C -0.003 4.003 22 C -0.193 4.193 23 C -0.228 4.228 24 C -0.070 4.070 25 O -0.194 6.194 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.270 0.730 39 H 0.121 0.879 40 H 0.166 0.834 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.807 -3.968 -1.822 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.143 4.143 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.211 4.211 7 C -0.140 4.140 8 C 0.287 3.713 9 O -0.434 6.434 10 O -0.279 6.279 11 C 0.246 3.754 12 H 0.059 0.941 13 C -0.593 4.593 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.526 5.526 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.203 1.203 21 C -0.054 4.054 22 C -0.213 4.213 23 C -0.247 4.247 24 C -0.136 4.136 25 O -0.092 6.092 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.183 0.817 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -14.638 -4.120 -1.816 15.314 hybrid contribution 1.524 0.238 0.188 1.554 sum -13.113 -3.882 -1.628 13.772 Atomic orbital electron populations 1.21756 0.94879 1.01899 1.02161 1.21576 0.96506 0.96451 1.01966 1.21614 0.91685 0.97733 1.03293 1.20970 0.96729 0.92809 0.98914 0.92265 1.21980 1.00792 1.01472 0.96867 1.21666 0.84203 1.01003 1.07098 1.24819 0.93591 0.81508 0.71374 1.90562 1.71779 1.33592 1.47440 1.86542 1.24075 1.35307 1.81931 1.18708 0.72973 0.98928 0.84777 0.94135 1.21199 0.92364 1.04551 1.41184 0.90811 1.25854 0.96807 1.00556 0.94825 1.70180 1.05431 1.34321 1.42707 0.85154 0.78284 0.78058 0.78077 1.18508 1.19578 1.20270 1.23351 0.98034 0.94169 0.89837 1.21275 1.01037 1.04386 0.94617 1.22042 1.03259 1.03979 0.95421 1.24688 0.97798 1.01279 0.89882 1.83959 1.53356 1.56089 1.15761 0.92243 0.92480 0.92499 0.92684 0.91849 0.90434 0.90813 0.94473 0.91347 0.91772 0.86074 0.85838 0.92075 0.86134 0.81693 0.74326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.13 -2.10 5.69 30.59 0.17 -1.92 16 3 C -0.11 -1.84 4.68 30.60 0.14 -1.70 16 4 C -0.08 -1.88 2.04 -10.79 -0.02 -1.90 16 5 H 0.06 1.70 7.96 -2.39 -0.02 1.68 16 6 C -0.15 -4.06 8.69 71.98 0.63 -3.43 16 7 C -0.10 -2.85 5.29 29.85 0.16 -2.69 16 8 C 0.44 18.58 7.64 71.24 0.54 19.13 16 9 O -0.54 -25.96 13.19 21.97 0.29 -25.67 16 10 O -0.36 -17.84 9.85 -49.44 -0.49 -18.32 16 11 C 0.30 16.82 2.42 29.10 0.07 16.89 16 12 H 0.04 2.52 7.15 -2.39 -0.02 2.50 16 13 C -0.56 -31.95 8.89 25.60 0.23 -31.72 16 14 H 0.07 4.15 7.81 -2.92 -0.02 4.13 16 15 C 0.02 1.26 5.30 84.65 0.45 1.70 16 16 N -0.89 -51.00 10.92 21.45 0.23 -50.76 16 17 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 21 C 0.00 -0.18 5.54 24.83 0.14 -0.05 16 22 C -0.19 -10.00 9.16 22.19 0.20 -9.80 16 23 C -0.23 -9.55 10.91 22.19 0.24 -9.31 16 24 C -0.07 -2.75 12.09 66.97 0.81 -1.94 16 25 O -0.19 -9.59 10.65 -1.32 -0.01 -9.60 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.06 6.56 -2.39 -0.02 1.04 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.27 5.96 -2.39 -0.01 1.25 16 34 H 0.07 1.56 6.56 -2.39 -0.02 1.55 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.12 6.59 7.85 -2.91 -0.02 6.56 16 40 H 0.17 5.59 8.06 -2.91 -0.02 5.57 16 41 H 0.24 6.34 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -70.21 341.26 7.53 -62.68 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 1.00 Total: 24.38 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.48 Total: -28.01 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.23 Total: -50.76 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.21 Total: -53.59 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -70.21 7.53 -62.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346720804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.513 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds