Wall clock time and date at job start Tue Mar 31 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.48428 * 2 1 4 4 C 1.53229 * 109.48873 * 239.96718 * 2 1 3 5 5 C 1.51270 * 108.53721 * 294.63879 * 4 2 1 6 6 O 1.20763 * 120.84620 * 128.67815 * 5 4 2 7 7 C 1.51261 * 118.30218 * 308.65693 * 5 4 2 8 8 C 1.53229 * 108.53719 * 51.34672 * 7 5 4 9 9 C 1.52953 * 109.48129 * 120.03049 * 2 1 3 10 10 H 1.09005 * 109.41538 * 176.42761 * 9 2 1 11 11 C 1.50701 * 109.41381 * 296.28480 * 9 2 1 12 12 O 1.20823 * 120.00046 * 0.02562 * 11 9 2 13 13 O 1.34229 * 119.99800 * 179.97438 * 11 9 2 14 14 C 1.45202 * 116.99647 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47201 * 30.00482 * 14 13 11 16 16 C 1.50702 * 109.46885 * 150.00194 * 14 13 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.53000 * 109.47304 * 270.00311 * 14 13 11 25 25 C 1.53004 * 117.49961 * 128.74956 * 24 14 13 26 26 C 1.52999 * 117.49755 * 60.09047 * 24 14 13 27 27 H 1.09000 * 109.47091 * 299.97230 * 1 2 3 28 28 H 1.09002 * 109.47040 * 59.96654 * 1 2 3 29 29 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.63067 * 54.35533 * 4 2 1 31 31 H 1.09001 * 109.62533 * 174.73497 * 4 2 1 32 32 H 1.09004 * 109.63098 * 171.06078 * 7 5 4 33 33 H 1.08996 * 109.62680 * 291.43850 * 7 5 4 34 34 H 1.09006 * 109.47993 * 185.39505 * 8 7 5 35 35 H 1.08999 * 109.48360 * 65.35320 * 8 7 5 36 36 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 37 37 H 1.09003 * 115.55178 * 274.41825 * 24 14 13 38 38 H 1.09007 * 117.49628 * 359.97438 * 25 24 14 39 39 H 1.08991 * 117.49989 * 145.01848 * 25 24 14 40 40 H 1.09008 * 117.49442 * 214.97758 * 26 24 14 41 41 H 1.08995 * 117.49768 * 359.97204 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0412 -0.7230 -1.2506 5 6 1.6380 -2.1783 -1.1633 6 8 1.0653 -2.7182 -2.0792 7 6 1.9709 -2.9402 0.1003 8 6 1.4622 -2.1368 1.3019 9 6 2.0401 -0.7216 1.2484 10 1 3.1283 -0.7768 1.2158 11 6 1.6138 0.0403 2.4767 12 8 0.9682 1.0553 2.3642 13 8 1.9505 -0.4094 3.6958 14 6 1.5063 0.3756 4.8338 15 1 0.5714 0.8782 4.5858 16 6 1.2900 -0.5326 6.0168 17 1 1.4689 -1.5935 5.9230 18 6 0.8698 -0.0081 7.2208 19 7 0.6523 1.2839 7.3351 20 14 0.6091 -1.1328 8.6892 21 1 1.8733 -1.2403 9.4610 22 1 -0.4557 -0.5721 9.5593 23 1 0.2026 -2.4800 8.2150 24 6 2.5702 1.4194 5.1798 25 6 2.1140 2.8729 5.3215 26 6 2.9328 2.4427 4.1017 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5144 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 1.5994 -0.2734 -2.1398 31 1 3.1272 -0.6434 -1.3012 32 1 1.4839 -3.9152 0.0792 33 1 3.0503 -3.0718 0.1748 34 1 1.7778 -2.6238 2.2246 35 1 0.3738 -2.0865 1.2710 36 1 0.3563 1.6528 8.1820 37 1 3.3691 1.0763 5.8372 38 1 1.0560 3.0857 5.1677 39 1 2.6130 3.4862 6.0717 40 1 3.9703 2.7731 4.0501 41 1 2.4138 2.3720 3.1459 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347936231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:51 Heat of formation + Delta-G solvation = -117.047840 kcal Electronic energy + Delta-G solvation = -22958.840965 eV Core-core repulsion = 19611.116908 eV Total energy + Delta-G solvation = -3347.724057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68797 -39.40538 -37.24045 -35.94719 -34.94315 -32.68407 -32.12701 -29.70087 -27.96766 -27.13132 -23.49996 -23.12405 -22.00707 -21.27025 -20.30472 -19.21967 -18.41864 -17.25396 -16.52874 -16.36757 -15.58174 -15.40749 -15.21224 -14.84638 -14.59615 -14.19327 -13.88716 -13.76363 -13.04482 -13.00805 -12.60481 -12.40665 -11.95463 -11.80413 -11.75186 -11.47763 -11.35284 -11.05707 -11.03877 -10.94717 -10.79098 -10.55822 -10.42608 -10.28799 -9.85431 -9.60138 -9.47123 -9.30398 -9.05205 -8.67629 -8.44942 -6.17753 -4.25727 1.83369 2.91650 3.23106 3.29246 3.31570 3.54363 3.98823 4.31525 4.44754 4.59221 4.83859 4.87467 5.02469 5.04793 5.14173 5.15394 5.28436 5.35428 5.52215 5.59749 5.70952 5.77281 5.86026 5.91632 5.92672 6.04552 6.10081 6.14044 6.28851 6.37452 6.45112 6.54341 6.68139 6.97872 7.13051 7.25176 7.36226 7.38567 7.60479 7.83622 8.09283 8.60860 8.86795 9.39165 10.88870 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.004882 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.394870 B = 5733.905171 C = 6486.371886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.067 4.067 3 H 0.092 0.908 4 C -0.165 4.165 5 C 0.364 3.636 6 O -0.463 6.463 7 C -0.167 4.167 8 C -0.110 4.110 9 C -0.084 4.084 10 H 0.108 0.892 11 C 0.459 3.541 12 O -0.513 6.513 13 O -0.350 6.350 14 C 0.249 3.751 15 H 0.048 0.952 16 C -0.528 4.528 17 H 0.068 0.932 18 C 0.069 3.931 19 N -0.873 5.873 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.230 4.230 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 -3.230 -12.017 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.086 4.086 3 H 0.110 0.890 4 C -0.203 4.203 5 C 0.240 3.760 6 O -0.337 6.337 7 C -0.205 4.205 8 C -0.147 4.147 9 C -0.103 4.103 10 H 0.126 0.874 11 C 0.302 3.698 12 O -0.404 6.404 13 O -0.266 6.266 14 C 0.197 3.803 15 H 0.066 0.934 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.508 5.508 20 Si 0.733 3.267 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.134 4.134 25 C -0.160 4.160 26 C -0.267 4.267 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.866 -3.064 -12.332 13.282 hybrid contribution 0.012 -0.228 1.097 1.120 sum 3.878 -3.292 -11.235 12.333 Atomic orbital electron populations 1.22138 0.94201 1.01812 1.03847 1.20913 0.97213 0.99770 0.90678 0.88983 1.22409 1.03326 0.94339 1.00244 1.24928 0.73776 0.90384 0.86904 1.90398 1.31726 1.71722 1.39850 1.22320 1.03949 1.00181 0.94066 1.21563 1.01812 0.92882 0.98466 1.21100 1.02741 0.95449 0.91035 0.87445 1.23103 0.76940 0.83645 0.86066 1.90539 1.37259 1.25158 1.87422 1.86476 1.70794 1.54348 1.14959 1.20201 0.92149 0.88505 0.79470 0.93420 1.20903 1.47387 0.94363 0.93945 0.91341 1.24872 0.94757 0.95340 0.98515 1.70045 1.44135 1.10899 1.25759 0.86379 0.77955 0.80616 0.81792 1.20467 1.21056 1.19685 1.22605 1.00884 0.90953 0.98939 1.22357 0.99193 0.97571 0.96927 1.23284 0.99418 1.08424 0.95531 0.89568 0.92622 0.93128 0.89000 0.88175 0.88974 0.87980 0.88678 0.90416 0.92632 0.89408 0.89358 0.90840 0.91114 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.31 37.16 0.31 -1.82 16 2 C -0.07 -0.78 2.33 -90.52 -0.21 -0.99 16 3 H 0.09 1.10 8.00 -51.93 -0.42 0.68 16 4 C -0.17 -1.57 5.65 -27.49 -0.16 -1.73 16 5 C 0.36 4.07 5.75 -28.48 -0.16 3.91 16 6 O -0.46 -6.71 17.89 6.00 0.11 -6.60 16 7 C -0.17 -1.60 6.17 -27.49 -0.17 -1.77 16 8 C -0.11 -1.29 4.90 -26.63 -0.13 -1.42 16 9 C -0.08 -1.08 2.30 -91.82 -0.21 -1.29 16 10 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 11 C 0.46 8.46 6.19 36.01 0.22 8.68 16 12 O -0.51 -10.57 10.93 -18.75 -0.20 -10.77 16 13 O -0.35 -7.61 9.66 -39.26 -0.38 -7.98 16 14 C 0.25 6.25 2.25 -27.88 -0.06 6.19 16 15 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 16 C -0.53 -14.13 8.88 -34.44 -0.31 -14.44 16 17 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 19 N -0.87 -23.65 11.42 55.43 0.63 -23.02 16 20 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.11 -2.72 4.47 -90.62 -0.40 -3.12 16 25 C -0.12 -2.76 9.04 -26.69 -0.24 -3.01 16 26 C -0.23 -4.74 9.80 -26.69 -0.26 -5.00 16 27 H 0.09 1.36 5.84 -51.93 -0.30 1.06 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.65 5.61 -51.93 -0.29 0.35 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.16 8.02 -51.93 -0.42 0.75 16 35 H 0.08 0.98 6.20 -51.93 -0.32 0.66 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.09 2.15 8.11 -51.93 -0.42 1.73 16 38 H 0.09 2.12 8.05 -51.93 -0.42 1.71 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 41 H 0.09 1.98 5.38 -51.93 -0.28 1.70 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -29.64 325.44 -7.99 -37.64 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.15 Total: 4.46 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.88 Total: -14.07 kcal Atomic # 7 Polarization: -23.65 SS G_CDS: 0.63 Total: -23.02 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.48 Total: -25.36 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.64 -7.99 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.411 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds