Wall clock time and date at job start Tue Mar 31 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.48428 * 2 1 4 4 C 1.53229 * 109.48873 * 239.96718 * 2 1 3 5 5 C 1.51270 * 108.53721 * 294.63879 * 4 2 1 6 6 O 1.20763 * 120.84620 * 128.67815 * 5 4 2 7 7 C 1.51261 * 118.30218 * 308.65693 * 5 4 2 8 8 C 1.53229 * 108.53719 * 51.34672 * 7 5 4 9 9 C 1.52953 * 109.48129 * 120.03049 * 2 1 3 10 10 H 1.09005 * 109.41538 * 176.42761 * 9 2 1 11 11 C 1.50701 * 109.41381 * 296.28480 * 9 2 1 12 12 O 1.20823 * 120.00046 * 0.02562 * 11 9 2 13 13 O 1.34229 * 119.99800 * 179.97438 * 11 9 2 14 14 C 1.45202 * 116.99647 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47201 * 30.00482 * 14 13 11 16 16 C 1.50702 * 109.46885 * 150.00194 * 14 13 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.53000 * 109.47304 * 270.00311 * 14 13 11 25 25 C 1.53004 * 117.49961 * 128.74956 * 24 14 13 26 26 C 1.52999 * 117.49755 * 60.09047 * 24 14 13 27 27 H 1.09000 * 109.47091 * 299.97230 * 1 2 3 28 28 H 1.09002 * 109.47040 * 59.96654 * 1 2 3 29 29 H 1.08999 * 109.47394 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.63067 * 54.35533 * 4 2 1 31 31 H 1.09001 * 109.62533 * 174.73497 * 4 2 1 32 32 H 1.09004 * 109.63098 * 171.06078 * 7 5 4 33 33 H 1.08996 * 109.62680 * 291.43850 * 7 5 4 34 34 H 1.09006 * 109.47993 * 185.39505 * 8 7 5 35 35 H 1.08999 * 109.48360 * 65.35320 * 8 7 5 36 36 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 37 37 H 1.09003 * 115.55178 * 274.41825 * 24 14 13 38 38 H 1.09007 * 117.49628 * 359.97438 * 25 24 14 39 39 H 1.08991 * 117.49989 * 145.01848 * 25 24 14 40 40 H 1.09008 * 117.49442 * 214.97758 * 26 24 14 41 41 H 1.08995 * 117.49768 * 359.97204 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0412 -0.7230 -1.2506 5 6 1.6380 -2.1783 -1.1633 6 8 1.0653 -2.7182 -2.0792 7 6 1.9709 -2.9402 0.1003 8 6 1.4622 -2.1368 1.3019 9 6 2.0401 -0.7216 1.2484 10 1 3.1283 -0.7768 1.2158 11 6 1.6138 0.0403 2.4767 12 8 0.9682 1.0553 2.3642 13 8 1.9505 -0.4094 3.6958 14 6 1.5063 0.3756 4.8338 15 1 0.5714 0.8782 4.5858 16 6 1.2900 -0.5326 6.0168 17 1 1.4689 -1.5935 5.9230 18 6 0.8698 -0.0081 7.2208 19 7 0.6523 1.2839 7.3351 20 14 0.6091 -1.1328 8.6892 21 1 1.8733 -1.2403 9.4610 22 1 -0.4557 -0.5721 9.5593 23 1 0.2026 -2.4800 8.2150 24 6 2.5702 1.4194 5.1798 25 6 2.1140 2.8729 5.3215 26 6 2.9328 2.4427 4.1017 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5144 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 1.5994 -0.2734 -2.1398 31 1 3.1272 -0.6434 -1.3012 32 1 1.4839 -3.9152 0.0792 33 1 3.0503 -3.0718 0.1748 34 1 1.7778 -2.6238 2.2246 35 1 0.3738 -2.0865 1.2710 36 1 0.3563 1.6528 8.1820 37 1 3.3691 1.0763 5.8372 38 1 1.0560 3.0857 5.1677 39 1 2.6130 3.4862 6.0717 40 1 3.9703 2.7731 4.0501 41 1 2.4138 2.3720 3.1459 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:50 Heat of formation + Delta-G solvation = -132.385418 kcal Electronic energy + Delta-G solvation = -22959.506053 eV Core-core repulsion = 19611.116908 eV Total energy + Delta-G solvation = -3348.389145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91487 -40.67246 -38.64423 -37.38203 -36.62003 -34.68447 -33.05553 -30.82344 -29.65528 -28.29621 -25.34527 -24.13754 -23.29584 -23.00950 -21.64114 -20.94250 -19.44489 -18.87391 -18.24739 -17.59808 -17.07686 -16.70204 -16.43524 -16.23225 -15.90699 -15.59784 -15.17379 -14.85424 -14.57124 -14.48321 -13.82305 -13.59703 -13.41082 -13.15269 -12.98118 -12.83911 -12.80288 -12.66289 -12.55662 -12.22418 -12.16043 -12.05148 -11.83527 -11.72273 -11.49130 -11.32815 -10.95128 -10.86025 -10.55682 -10.38489 -10.36701 -8.19591 -6.35702 0.96429 1.43055 1.44192 1.45843 1.54841 2.05969 2.44986 3.08258 3.15840 3.26043 3.48085 3.65093 3.85536 3.95842 4.13414 4.18756 4.23461 4.27166 4.34235 4.35792 4.47280 4.51885 4.66926 4.75705 4.78781 4.84022 4.86999 4.92805 5.07091 5.11687 5.13092 5.15048 5.30376 5.32065 5.38122 5.44565 5.53597 5.62349 5.91898 6.23830 6.51337 6.68682 7.10415 7.35029 8.86338 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.004882 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.394870 B = 5733.905171 C = 6486.371886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.062 4.062 3 H 0.093 0.907 4 C -0.156 4.156 5 C 0.366 3.634 6 O -0.500 6.500 7 C -0.158 4.158 8 C -0.107 4.107 9 C -0.075 4.075 10 H 0.142 0.858 11 C 0.451 3.549 12 O -0.538 6.538 13 O -0.359 6.359 14 C 0.256 3.744 15 H 0.006 0.994 16 C -0.553 4.553 17 H 0.064 0.936 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.970 3.030 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.196 4.196 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.385 -3.975 -12.883 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.080 4.080 3 H 0.112 0.888 4 C -0.193 4.193 5 C 0.245 3.755 6 O -0.376 6.376 7 C -0.196 4.196 8 C -0.144 4.144 9 C -0.094 4.094 10 H 0.160 0.840 11 C 0.296 3.704 12 O -0.430 6.430 13 O -0.275 6.275 14 C 0.202 3.798 15 H 0.024 0.976 16 C -0.591 4.591 17 H 0.082 0.918 18 C -0.176 4.176 19 N -0.531 5.531 20 Si 0.794 3.206 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.192 1.192 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.233 4.233 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.823 -3.807 -13.212 14.932 hybrid contribution -0.658 0.034 1.325 1.479 sum 5.166 -3.773 -11.888 13.499 Atomic orbital electron populations 1.22103 0.95801 1.01369 1.02713 1.20879 0.95855 1.00140 0.91149 0.88834 1.22385 1.05509 0.92611 0.98790 1.25298 0.72403 0.91117 0.86686 1.90403 1.33352 1.72602 1.41284 1.22302 1.05978 0.99488 0.91815 1.21507 1.00887 0.92491 0.99538 1.21284 1.04748 0.95111 0.88222 0.83994 1.24273 0.76074 0.83756 0.86269 1.90536 1.38215 1.26634 1.87572 1.86463 1.71111 1.54248 1.15656 1.19764 0.91041 0.88667 0.80283 0.97644 1.21199 1.48220 0.94508 0.95151 0.91762 1.25669 0.94189 0.96751 1.00984 1.70162 1.44314 1.12313 1.26356 0.85383 0.78076 0.78785 0.78350 1.19574 1.20727 1.19242 1.22409 1.00648 0.91164 1.00851 1.22265 0.98286 0.97145 0.98712 1.23281 1.00656 1.05146 0.94176 0.92928 0.91450 0.93265 0.88473 0.84586 0.88662 0.84657 0.89129 0.92089 0.92547 0.90373 0.91883 0.89598 0.87856 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 8.31 71.98 0.60 -3.62 16 2 C -0.06 -1.31 2.33 -10.73 -0.02 -1.34 16 3 H 0.09 2.02 8.00 -2.39 -0.02 2.00 16 4 C -0.16 -2.41 5.65 30.11 0.17 -2.24 16 5 C 0.37 7.22 5.75 29.46 0.17 7.39 16 6 O -0.50 -13.63 17.89 -1.46 -0.03 -13.66 16 7 C -0.16 -2.57 6.17 30.10 0.19 -2.38 16 8 C -0.11 -2.35 4.90 30.66 0.15 -2.19 16 9 C -0.07 -1.78 2.30 -11.57 -0.03 -1.81 16 10 H 0.14 2.47 8.14 -2.38 -0.02 2.45 16 11 C 0.45 16.65 6.19 71.24 0.44 17.09 16 12 O -0.54 -22.76 10.93 21.97 0.24 -22.52 16 13 O -0.36 -15.80 9.66 -51.41 -0.50 -16.30 16 14 C 0.26 13.25 2.25 29.85 0.07 13.32 16 15 H 0.01 0.34 6.91 -2.38 -0.02 0.33 16 16 C -0.55 -30.34 8.88 25.60 0.23 -30.11 16 17 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 18 C 0.03 1.40 5.30 84.66 0.45 1.85 16 19 N -0.90 -49.55 11.42 21.45 0.24 -49.31 16 20 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 C -0.13 -6.30 4.47 -10.79 -0.05 -6.35 16 25 C -0.13 -5.75 9.04 30.62 0.28 -5.47 16 26 C -0.20 -7.88 9.80 30.62 0.30 -7.58 16 27 H 0.05 1.72 5.84 -2.39 -0.01 1.71 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.26 5.61 -2.39 -0.01 1.25 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.14 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 2.11 8.02 -2.38 -0.02 2.09 16 35 H 0.06 1.54 6.20 -2.39 -0.01 1.52 16 36 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 37 H 0.08 3.86 8.11 -2.39 -0.02 3.84 16 38 H 0.06 3.16 8.05 -2.38 -0.02 3.14 16 39 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 41 H 0.09 3.72 5.38 -2.39 -0.01 3.71 16 Total: -1.00 -66.83 325.44 5.95 -60.88 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.02 Total: 20.20 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 2.93 Total: -23.46 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.24 Total: -49.31 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.28 Total: -52.48 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.83 5.95 -60.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.501 kcal (2) G-P(sol) polarization free energy of solvation -66.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds