Wall clock time and date at job start Tue Mar 31 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.49448 * 2 1 4 4 C 1.53236 * 109.54080 * 239.99098 * 2 1 3 5 5 C 1.51269 * 108.48290 * 294.72290 * 4 2 1 6 6 O 1.20763 * 120.85401 * 128.59370 * 5 4 2 7 7 C 1.51267 * 118.30187 * 308.60898 * 5 4 2 8 8 C 1.53234 * 108.53535 * 51.34794 * 7 5 4 9 9 C 1.52952 * 109.40460 * 305.37572 * 8 7 5 10 10 H 1.09002 * 109.41334 * 303.56000 * 9 8 7 11 11 C 1.50700 * 109.41524 * 183.70411 * 9 8 7 12 12 O 1.20820 * 120.00282 * 239.85751 * 11 9 8 13 13 O 1.34234 * 119.99963 * 59.85796 * 11 9 8 14 14 C 1.45202 * 116.99952 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.46798 * 329.99198 * 14 13 11 16 16 C 1.50695 * 109.46650 * 209.99787 * 14 13 11 17 17 H 1.08004 * 120.00546 * 0.27413 * 16 14 13 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46793 * 120.00131 * 20 18 16 23 23 H 1.48500 * 109.47000 * 240.00224 * 20 18 16 24 24 C 1.52994 * 109.47234 * 89.99608 * 14 13 11 25 25 C 1.53000 * 117.50156 * 8.74922 * 24 14 13 26 26 C 1.52998 * 117.50072 * 300.08487 * 24 14 13 27 27 H 1.09008 * 109.46880 * 299.97062 * 1 2 3 28 28 H 1.08997 * 109.47194 * 59.96997 * 1 2 3 29 29 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.69016 * 175.00652 * 4 2 1 31 31 H 1.09001 * 109.77837 * 54.48926 * 4 2 1 32 32 H 1.09000 * 109.62893 * 291.63405 * 7 5 4 33 33 H 1.09001 * 109.78977 * 171.15961 * 7 5 4 34 34 H 1.09003 * 109.47897 * 185.39141 * 8 7 5 35 35 H 1.09002 * 109.49144 * 65.35968 * 8 7 5 36 36 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.55113 * 154.41856 * 24 14 13 38 38 H 1.09000 * 117.49566 * 359.97438 * 25 24 14 39 39 H 1.08994 * 117.49986 * 145.02246 * 25 24 14 40 40 H 1.09001 * 117.50153 * 214.98333 * 26 24 14 41 41 H 1.08996 * 117.50084 * 0.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0426 -0.7222 -1.2505 5 6 1.6375 -2.1771 -1.1639 6 8 1.0640 -2.7159 -2.0799 7 6 1.9689 -2.9398 0.0997 8 6 1.4605 -2.1362 1.3012 9 6 2.0401 -0.7217 1.2485 10 1 3.1282 -0.7770 1.2157 11 6 1.6141 0.0404 2.4768 12 8 0.9669 1.0544 2.3644 13 8 1.9537 -0.4074 3.6958 14 6 1.5087 0.3771 4.8338 15 1 1.4395 1.4264 4.5469 16 6 2.4959 0.2290 5.9627 17 1 3.3726 -0.3889 5.8360 18 6 2.2831 0.8874 7.1553 19 7 1.2184 1.6442 7.3078 20 14 3.5065 0.7034 8.5550 21 1 4.6098 -0.1965 8.1330 22 1 4.0614 2.0354 8.9057 23 1 2.8210 0.1254 9.7387 24 6 0.1349 -0.1189 5.2892 25 6 -0.3985 -1.4044 4.6537 26 6 -1.0110 -0.0528 4.2777 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1289 -0.6470 -1.2988 31 1 1.6045 -0.2727 -2.1417 32 1 3.0484 -3.0698 0.1765 33 1 1.4833 -3.9155 0.0799 34 1 1.7750 -2.6238 2.2240 35 1 0.3722 -2.0845 1.2700 36 1 1.0685 2.1070 8.1470 37 1 -0.1071 0.0628 6.3364 38 1 0.2292 -1.8965 3.9108 39 1 -0.9917 -2.0682 5.2825 40 1 -2.0070 0.1719 4.6593 41 1 -0.7862 0.3436 3.2875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347936232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:54 Heat of formation + Delta-G solvation = -116.152374 kcal Electronic energy + Delta-G solvation = -23196.369394 eV Core-core repulsion = 19848.684167 eV Total energy + Delta-G solvation = -3347.685227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76004 -39.49258 -37.30548 -36.02400 -34.78383 -32.86266 -32.15389 -29.73744 -27.97027 -27.19411 -23.56437 -23.20688 -22.08773 -21.46506 -20.39455 -19.04340 -18.44317 -17.10835 -16.73574 -16.29933 -15.95065 -15.43000 -15.16793 -15.01540 -14.41362 -14.21361 -14.09308 -13.70347 -13.31347 -12.72488 -12.63506 -12.38661 -12.03926 -11.82149 -11.73353 -11.57123 -11.39837 -11.10426 -11.03064 -10.99829 -10.85675 -10.60693 -10.54031 -10.32823 -10.08439 -9.57367 -9.50125 -9.47659 -9.15387 -8.56535 -8.48340 -6.23109 -4.30248 1.81658 2.87298 3.20554 3.27642 3.31361 3.52517 3.96711 4.28841 4.42172 4.56708 4.80935 4.85012 4.92980 5.00976 5.09912 5.12273 5.25126 5.31131 5.50473 5.57280 5.68605 5.73174 5.79754 5.83290 5.88374 6.00434 6.04845 6.07974 6.11572 6.26076 6.39001 6.44905 6.68122 6.87302 6.97366 7.15290 7.34542 7.53047 7.56258 7.80544 8.07456 8.56535 8.83180 9.34654 10.84052 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.004687 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.426023 B = 5972.865354 C = 6190.603704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.067 4.067 3 H 0.092 0.908 4 C -0.165 4.165 5 C 0.364 3.636 6 O -0.463 6.463 7 C -0.167 4.167 8 C -0.110 4.110 9 C -0.085 4.085 10 H 0.109 0.891 11 C 0.457 3.543 12 O -0.510 6.510 13 O -0.350 6.350 14 C 0.248 3.752 15 H 0.052 0.948 16 C -0.518 4.518 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.115 4.115 25 C -0.195 4.195 26 C -0.210 4.210 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.266 0.734 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -5.865 -11.987 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.086 4.086 3 H 0.111 0.889 4 C -0.203 4.203 5 C 0.240 3.760 6 O -0.337 6.337 7 C -0.205 4.205 8 C -0.148 4.148 9 C -0.104 4.104 10 H 0.126 0.874 11 C 0.300 3.700 12 O -0.400 6.400 13 O -0.266 6.266 14 C 0.195 3.805 15 H 0.070 0.930 16 C -0.556 4.556 17 H 0.089 0.911 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.134 4.134 25 C -0.232 4.232 26 C -0.247 4.247 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.956 -5.726 -12.305 13.606 hybrid contribution 0.466 0.124 0.970 1.084 sum 1.422 -5.602 -11.335 12.724 Atomic orbital electron populations 1.22144 0.94183 1.01806 1.03860 1.20916 0.97204 0.99836 0.90647 0.88930 1.22410 1.03349 0.94308 1.00229 1.24925 0.73799 0.90387 0.86886 1.90399 1.31690 1.71740 1.39826 1.22318 1.03999 1.00151 0.94047 1.21587 1.01801 0.92918 0.98453 1.21110 1.02864 0.95389 0.91050 0.87350 1.23140 0.77065 0.83720 0.86088 1.90552 1.36865 1.25162 1.87420 1.86488 1.70448 1.54644 1.14990 1.20142 0.90463 0.90665 0.79189 0.93030 1.20983 1.07521 1.30380 0.96719 0.91145 1.24901 0.95924 0.94599 0.98413 1.69987 1.26476 1.29621 1.26119 0.86269 0.80818 0.78056 0.81315 1.19448 1.20770 1.20724 1.23012 0.93675 0.97262 0.99453 1.22824 1.04471 0.91267 1.04656 1.23154 0.98481 1.01113 1.01976 0.89592 0.92575 0.93115 0.88154 0.88947 0.87959 0.88944 0.88827 0.90367 0.92442 0.85368 0.89673 0.90510 0.90619 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.31 37.16 0.31 -1.79 16 2 C -0.07 -0.78 2.32 -90.52 -0.21 -0.99 16 3 H 0.09 1.11 8.00 -51.93 -0.42 0.70 16 4 C -0.17 -1.56 5.66 -27.48 -0.16 -1.72 16 5 C 0.36 4.03 5.74 -28.48 -0.16 3.86 16 6 O -0.46 -6.64 17.89 6.00 0.11 -6.54 16 7 C -0.17 -1.57 6.17 -27.48 -0.17 -1.74 16 8 C -0.11 -1.26 4.88 -26.63 -0.13 -1.39 16 9 C -0.08 -1.09 2.30 -91.82 -0.21 -1.30 16 10 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 11 C 0.46 8.37 5.92 36.01 0.21 8.58 16 12 O -0.51 -10.52 10.93 -18.75 -0.20 -10.73 16 13 O -0.35 -7.49 8.21 -39.27 -0.32 -7.81 16 14 C 0.25 6.22 2.41 -27.89 -0.07 6.15 16 15 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 16 C -0.52 -13.83 8.90 -34.44 -0.31 -14.14 16 17 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 18 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 19 N -0.88 -24.31 11.59 55.43 0.64 -23.66 16 20 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.12 -2.73 5.27 -90.62 -0.48 -3.21 16 25 C -0.20 -3.89 9.80 -26.69 -0.26 -4.15 16 26 C -0.21 -4.38 9.85 -26.69 -0.26 -4.64 16 27 H 0.09 1.33 5.84 -51.92 -0.30 1.03 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.64 5.60 -51.93 -0.29 0.34 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.10 8.02 -51.93 -0.42 0.69 16 35 H 0.08 0.96 6.19 -51.93 -0.32 0.64 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.13 3.36 6.46 -51.93 -0.34 3.02 16 38 H 0.08 1.61 6.89 -51.93 -0.36 1.25 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 1.98 5.37 -51.93 -0.28 1.70 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -29.78 322.97 -7.94 -37.72 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.02 Total: 5.67 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.99 Total: -14.87 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.64 Total: -23.66 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.42 Total: -25.08 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.78 -7.94 -37.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.434 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds