Wall clock time and date at job start Tue Mar 31 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.49448 * 2 1 4 4 C 1.53236 * 109.54080 * 239.99098 * 2 1 3 5 5 C 1.51269 * 108.48290 * 294.72290 * 4 2 1 6 6 O 1.20763 * 120.85401 * 128.59370 * 5 4 2 7 7 C 1.51267 * 118.30187 * 308.60898 * 5 4 2 8 8 C 1.53234 * 108.53535 * 51.34794 * 7 5 4 9 9 C 1.52952 * 109.40460 * 305.37572 * 8 7 5 10 10 H 1.09002 * 109.41334 * 303.56000 * 9 8 7 11 11 C 1.50700 * 109.41524 * 183.70411 * 9 8 7 12 12 O 1.20820 * 120.00282 * 239.85751 * 11 9 8 13 13 O 1.34234 * 119.99963 * 59.85796 * 11 9 8 14 14 C 1.45202 * 116.99952 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.46798 * 329.99198 * 14 13 11 16 16 C 1.50695 * 109.46650 * 209.99787 * 14 13 11 17 17 H 1.08004 * 120.00546 * 0.27413 * 16 14 13 18 18 C 1.37885 * 119.99721 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00035 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99853 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46793 * 120.00131 * 20 18 16 23 23 H 1.48500 * 109.47000 * 240.00224 * 20 18 16 24 24 C 1.52994 * 109.47234 * 89.99608 * 14 13 11 25 25 C 1.53000 * 117.50156 * 8.74922 * 24 14 13 26 26 C 1.52998 * 117.50072 * 300.08487 * 24 14 13 27 27 H 1.09008 * 109.46880 * 299.97062 * 1 2 3 28 28 H 1.08997 * 109.47194 * 59.96997 * 1 2 3 29 29 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.69016 * 175.00652 * 4 2 1 31 31 H 1.09001 * 109.77837 * 54.48926 * 4 2 1 32 32 H 1.09000 * 109.62893 * 291.63405 * 7 5 4 33 33 H 1.09001 * 109.78977 * 171.15961 * 7 5 4 34 34 H 1.09003 * 109.47897 * 185.39141 * 8 7 5 35 35 H 1.09002 * 109.49144 * 65.35968 * 8 7 5 36 36 H 0.97000 * 119.99706 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.55113 * 154.41856 * 24 14 13 38 38 H 1.09000 * 117.49566 * 359.97438 * 25 24 14 39 39 H 1.08994 * 117.49986 * 145.02246 * 25 24 14 40 40 H 1.09001 * 117.50153 * 214.98333 * 26 24 14 41 41 H 1.08996 * 117.50084 * 0.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0426 -0.7222 -1.2505 5 6 1.6375 -2.1771 -1.1639 6 8 1.0640 -2.7159 -2.0799 7 6 1.9689 -2.9398 0.0997 8 6 1.4605 -2.1362 1.3012 9 6 2.0401 -0.7217 1.2485 10 1 3.1282 -0.7770 1.2157 11 6 1.6141 0.0404 2.4768 12 8 0.9669 1.0544 2.3644 13 8 1.9537 -0.4074 3.6958 14 6 1.5087 0.3771 4.8338 15 1 1.4395 1.4264 4.5469 16 6 2.4959 0.2290 5.9627 17 1 3.3726 -0.3889 5.8360 18 6 2.2831 0.8874 7.1553 19 7 1.2184 1.6442 7.3078 20 14 3.5065 0.7034 8.5550 21 1 4.6098 -0.1965 8.1330 22 1 4.0614 2.0354 8.9057 23 1 2.8210 0.1254 9.7387 24 6 0.1349 -0.1189 5.2892 25 6 -0.3985 -1.4044 4.6537 26 6 -1.0110 -0.0528 4.2777 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1289 -0.6470 -1.2988 31 1 1.6045 -0.2727 -2.1417 32 1 3.0484 -3.0698 0.1765 33 1 1.4833 -3.9155 0.0799 34 1 1.7750 -2.6238 2.2240 35 1 0.3722 -2.0845 1.2700 36 1 1.0685 2.1070 8.1470 37 1 -0.1071 0.0628 6.3364 38 1 0.2292 -1.8965 3.9108 39 1 -0.9917 -2.0682 5.2825 40 1 -2.0070 0.1719 4.6593 41 1 -0.7862 0.3436 3.2875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:53 Heat of formation + Delta-G solvation = -131.705006 kcal Electronic energy + Delta-G solvation = -23197.043807 eV Core-core repulsion = 19848.684167 eV Total energy + Delta-G solvation = -3348.359640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00613 -40.72038 -38.68505 -37.40105 -36.44791 -34.85016 -33.05922 -30.85299 -29.66148 -28.32117 -25.42544 -24.19379 -23.36644 -23.09625 -21.68916 -20.72026 -19.47334 -18.72462 -18.36114 -17.61653 -17.42558 -16.88215 -16.32851 -16.05203 -15.95292 -15.53022 -15.19471 -14.98446 -14.61325 -14.30773 -13.75673 -13.65331 -13.39667 -13.19155 -13.08456 -12.81528 -12.78949 -12.67213 -12.56300 -12.29823 -12.21779 -12.07130 -11.91297 -11.78476 -11.49583 -11.31543 -11.07909 -10.90912 -10.44628 -10.38504 -10.37052 -8.24537 -6.40137 0.96391 1.41483 1.43474 1.44539 1.57236 2.05043 2.44333 3.04004 3.15552 3.18572 3.46156 3.64112 3.81954 3.95092 4.09934 4.17366 4.22529 4.26138 4.29670 4.32426 4.36159 4.52001 4.67010 4.74646 4.77811 4.82676 4.90879 4.92177 5.03673 5.07590 5.12207 5.14240 5.28608 5.30581 5.33817 5.42178 5.57186 5.60534 5.97824 6.18901 6.51341 6.66396 7.07137 7.31510 8.82825 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.004687 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.426023 B = 5972.865354 C = 6190.603704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 H 0.089 0.911 4 C -0.156 4.156 5 C 0.367 3.633 6 O -0.499 6.499 7 C -0.159 4.159 8 C -0.106 4.106 9 C -0.077 4.077 10 H 0.139 0.861 11 C 0.450 3.550 12 O -0.537 6.537 13 O -0.354 6.354 14 C 0.256 3.744 15 H 0.006 0.994 16 C -0.540 4.540 17 H 0.069 0.931 18 C 0.019 3.981 19 N -0.914 5.914 20 Si 0.975 3.025 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.276 1.276 24 C -0.146 4.146 25 C -0.166 4.166 26 C -0.202 4.202 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.268 0.732 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -7.528 -12.827 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.082 4.082 3 H 0.107 0.893 4 C -0.194 4.194 5 C 0.245 3.755 6 O -0.375 6.375 7 C -0.196 4.196 8 C -0.144 4.144 9 C -0.095 4.095 10 H 0.157 0.843 11 C 0.294 3.706 12 O -0.428 6.428 13 O -0.271 6.271 14 C 0.203 3.797 15 H 0.023 0.977 16 C -0.578 4.578 17 H 0.087 0.913 18 C -0.181 4.181 19 N -0.552 5.552 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.201 1.201 24 C -0.165 4.165 25 C -0.203 4.203 26 C -0.239 4.239 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.309 -7.394 -13.161 15.271 hybrid contribution 0.003 0.701 1.178 1.371 sum 2.313 -6.693 -11.983 13.918 Atomic orbital electron populations 1.22105 0.95455 1.01570 1.02784 1.20877 0.96137 0.99954 0.91183 0.89299 1.22386 1.05362 0.92848 0.98785 1.25280 0.72430 0.90980 0.86766 1.90405 1.33309 1.72567 1.41260 1.22303 1.05943 0.99579 0.91781 1.21543 1.01133 0.92089 0.99600 1.21297 1.04661 0.95401 0.88173 0.84348 1.24308 0.76172 0.83781 0.86315 1.90550 1.37988 1.26668 1.87582 1.86469 1.70880 1.54172 1.15541 1.19652 0.91213 0.88769 0.80091 0.97679 1.21289 1.07999 1.30716 0.97751 0.91300 1.25763 0.97576 0.94006 1.00792 1.70118 1.28092 1.30256 1.26768 0.85242 0.78655 0.78140 0.78040 1.18492 1.20454 1.20100 1.22706 0.94063 1.01216 0.98519 1.22910 1.03224 0.90391 1.03775 1.23134 0.98013 1.01939 1.00791 0.92677 0.91587 0.92920 0.84865 0.88500 0.84867 0.88359 0.88845 0.91532 0.92335 0.88261 0.88451 0.88382 0.89445 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 8.31 71.98 0.60 -3.48 16 2 C -0.06 -1.34 2.32 -10.73 -0.02 -1.37 16 3 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 4 C -0.16 -2.45 5.66 30.11 0.17 -2.28 16 5 C 0.37 7.04 5.74 29.46 0.17 7.21 16 6 O -0.50 -13.31 17.89 -1.46 -0.03 -13.34 16 7 C -0.16 -2.42 6.17 30.11 0.19 -2.23 16 8 C -0.11 -2.16 4.88 30.66 0.15 -2.01 16 9 C -0.08 -1.80 2.30 -11.57 -0.03 -1.83 16 10 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 11 C 0.45 16.42 5.92 71.24 0.42 16.84 16 12 O -0.54 -22.83 10.93 21.98 0.24 -22.59 16 13 O -0.35 -15.28 8.21 -51.46 -0.42 -15.70 16 14 C 0.26 13.30 2.41 29.84 0.07 13.37 16 15 H 0.01 0.33 7.16 -2.39 -0.02 0.31 16 16 C -0.54 -29.46 8.90 25.60 0.23 -29.23 16 17 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 18 C 0.02 1.00 5.20 84.66 0.44 1.44 16 19 N -0.91 -51.79 11.59 21.45 0.25 -51.54 16 20 Si 0.98 41.95 29.54 68.60 2.03 43.97 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 24 C -0.15 -7.10 5.27 -10.80 -0.06 -7.16 16 25 C -0.17 -6.47 9.80 30.62 0.30 -6.17 16 26 C -0.20 -8.48 9.85 30.62 0.30 -8.18 16 27 H 0.05 1.74 5.84 -2.38 -0.01 1.73 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.28 5.60 -2.39 -0.01 1.26 16 30 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.96 8.02 -2.39 -0.02 1.94 16 35 H 0.07 1.52 6.19 -2.39 -0.01 1.50 16 36 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.10 5.41 6.46 -2.38 -0.02 5.39 16 38 H 0.10 3.53 6.89 -2.39 -0.02 3.51 16 39 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.09 3.83 5.37 -2.39 -0.01 3.82 16 Total: -1.00 -67.49 322.97 6.02 -61.47 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.03 Total: 22.81 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 2.93 Total: -25.08 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.25 Total: -51.54 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.21 Total: -51.62 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.49 6.02 -61.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.238 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds