Wall clock time and date at job start Tue Mar 31 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.48980 * 2 1 4 4 C 1.53221 * 109.48408 * 239.96709 * 2 1 3 5 5 C 1.51267 * 108.53796 * 185.39042 * 4 2 1 6 6 O 1.20760 * 120.85037 * 231.32409 * 5 4 2 7 7 C 1.51266 * 118.30028 * 51.34434 * 5 4 2 8 8 C 1.53238 * 108.48494 * 308.61121 * 7 5 4 9 9 C 1.52954 * 109.48392 * 120.02601 * 2 1 3 10 10 H 1.09003 * 109.41317 * 63.55048 * 9 2 1 11 11 C 1.50696 * 109.41701 * 303.69076 * 9 2 1 12 12 O 1.20821 * 120.00147 * 324.68990 * 11 9 2 13 13 O 1.34232 * 120.00131 * 144.69232 * 11 9 2 14 14 C 1.45195 * 116.99997 * 179.97438 * 13 11 9 15 15 H 1.08993 * 109.47413 * 330.00244 * 14 13 11 16 16 C 1.50700 * 109.47362 * 209.99695 * 14 13 11 17 17 H 1.08007 * 119.99757 * 0.02562 * 16 14 13 18 18 C 1.37877 * 120.00520 * 179.97438 * 16 14 13 19 19 N 1.31520 * 119.99435 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00370 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47359 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47369 * 300.00479 * 20 18 16 23 23 H 1.48496 * 109.47195 * 60.00376 * 20 18 16 24 24 C 1.53001 * 109.46859 * 90.00339 * 14 13 11 25 25 C 1.52994 * 117.50232 * 8.74488 * 24 14 13 26 26 C 1.52998 * 117.49783 * 300.08292 * 24 14 13 27 27 H 1.08996 * 109.47221 * 305.48437 * 1 2 3 28 28 H 1.08994 * 109.47003 * 65.49215 * 1 2 3 29 29 H 1.09002 * 109.46339 * 185.48927 * 1 2 3 30 30 H 1.09005 * 109.62544 * 305.09988 * 4 2 1 31 31 H 1.08997 * 109.63103 * 65.67466 * 4 2 1 32 32 H 1.09003 * 109.62866 * 68.36831 * 7 5 4 33 33 H 1.08997 * 109.62630 * 188.74822 * 7 5 4 34 34 H 1.09004 * 109.54558 * 294.72361 * 8 7 5 35 35 H 1.09001 * 109.43264 * 174.67841 * 8 7 5 36 36 H 0.96997 * 120.00323 * 359.97438 * 19 18 16 37 37 H 1.09000 * 115.55004 * 154.41808 * 24 14 13 38 38 H 1.09007 * 117.49562 * 359.97438 * 25 24 14 39 39 H 1.08995 * 117.50243 * 145.01963 * 25 24 14 40 40 H 1.09003 * 117.49961 * 214.97896 * 26 24 14 41 41 H 1.09000 * 117.50114 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7230 -1.2505 5 6 3.5476 -0.8282 -1.1633 6 8 4.2476 -0.4682 -2.0792 7 6 4.1549 -1.3962 0.1003 8 6 3.5671 -0.6472 1.3010 9 6 2.0402 -0.7215 1.2484 10 1 1.7294 -1.7658 1.2158 11 6 1.4641 -0.0656 2.4768 12 8 1.2905 1.1299 2.4981 13 8 1.1438 -0.8095 3.5472 14 6 0.5941 -0.1105 4.6950 15 1 0.9972 0.9015 4.7314 16 6 0.9671 -0.8455 5.9567 17 1 1.5585 -1.7476 5.9014 18 6 0.5543 -0.3660 7.1817 19 7 -0.1655 0.7327 7.2490 20 14 1.0172 -1.2766 8.7455 21 1 0.4549 -0.5619 9.9195 22 1 0.4680 -2.6555 8.6965 23 1 2.4962 -1.3369 8.8639 24 6 -0.9297 -0.0485 4.5726 25 6 -1.5825 -0.8644 3.4551 26 6 -1.5117 0.6610 3.3484 27 1 -0.3633 0.5965 0.8368 28 1 -0.3633 0.4263 -0.9350 29 1 -0.3632 -1.0230 0.0983 30 1 1.6067 -1.7215 -1.2994 31 1 1.7646 -0.1565 -2.1397 32 1 3.9161 -2.4570 0.1766 33 1 5.2367 -1.2652 0.0776 34 1 3.8815 0.3961 1.2696 35 1 3.9219 -1.1062 2.2238 36 1 -0.4055 1.2058 6.4370 37 1 -1.4736 0.0425 5.5128 38 1 -0.9262 -1.4451 2.8067 39 1 -2.5559 -1.3099 3.6599 40 1 -2.4388 1.2183 3.4831 41 1 -0.8091 1.0839 2.6304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347936233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:56 Heat of formation + Delta-G solvation = -121.929919 kcal Electronic energy + Delta-G solvation = -23102.450239 eV Core-core repulsion = 19754.514479 eV Total energy + Delta-G solvation = -3347.935760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73517 -39.60011 -37.44180 -36.16477 -34.94784 -33.07290 -32.75838 -29.83251 -27.56197 -27.01903 -23.71126 -23.13321 -21.98367 -21.60732 -20.32672 -19.36123 -19.11307 -17.59079 -17.14222 -16.20737 -15.94582 -15.65929 -15.30394 -14.90132 -14.59366 -13.98043 -13.84084 -13.59377 -13.30604 -12.81041 -12.66096 -12.55666 -12.39159 -12.19831 -12.14976 -11.63959 -11.53908 -11.11079 -11.07742 -10.98592 -10.83638 -10.75791 -10.69851 -10.19925 -9.84120 -9.78184 -9.75253 -9.59518 -9.21283 -8.51978 -8.46129 -6.54631 -4.31098 1.73094 2.74222 3.32666 3.37575 3.40855 3.57370 3.88139 4.34554 4.39479 4.44306 4.62742 4.70963 4.82832 4.97408 5.07414 5.14039 5.16575 5.25003 5.41407 5.47803 5.53495 5.58873 5.60359 5.70230 5.77560 5.82083 5.84325 5.89804 5.99481 6.10159 6.18329 6.26227 6.49906 6.59278 6.80187 6.89182 7.14519 7.26674 7.39558 7.86404 8.18197 8.53479 8.66244 9.38949 10.81872 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004921 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.432263 B = 5688.101760 C = 6449.934123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 H 0.088 0.912 4 C -0.163 4.163 5 C 0.363 3.637 6 O -0.461 6.461 7 C -0.166 4.166 8 C -0.105 4.105 9 C -0.085 4.085 10 H 0.104 0.896 11 C 0.459 3.541 12 O -0.514 6.514 13 O -0.343 6.343 14 C 0.239 3.761 15 H 0.042 0.958 16 C -0.599 4.599 17 H 0.064 0.936 18 C 0.026 3.974 19 N -0.906 5.906 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.147 4.147 25 C -0.180 4.180 26 C -0.210 4.210 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.277 0.723 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -5.107 -13.327 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.089 4.089 3 H 0.106 0.894 4 C -0.201 4.201 5 C 0.238 3.762 6 O -0.334 6.334 7 C -0.204 4.204 8 C -0.143 4.143 9 C -0.104 4.104 10 H 0.123 0.877 11 C 0.302 3.698 12 O -0.404 6.404 13 O -0.258 6.258 14 C 0.186 3.814 15 H 0.059 0.941 16 C -0.637 4.637 17 H 0.082 0.918 18 C -0.178 4.178 19 N -0.541 5.541 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.166 4.166 25 C -0.217 4.217 26 C -0.246 4.246 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.757 -4.521 -12.097 13.205 hybrid contribution -0.125 0.020 -1.553 1.558 sum 2.632 -4.501 -13.650 14.612 Atomic orbital electron populations 1.22004 0.93650 1.02696 1.03125 1.20993 0.97038 1.00074 0.90839 0.89379 1.22405 0.94136 1.03551 0.99969 1.24947 0.91648 0.72667 0.86915 1.90406 1.65425 1.37816 1.39763 1.22307 1.02194 1.02029 0.93834 1.21456 0.92263 1.02075 0.98497 1.21133 0.96336 1.01922 0.91003 0.87739 1.23197 0.75165 0.86296 0.85167 1.90580 1.50775 1.16458 1.82562 1.86528 1.72456 1.42662 1.24190 1.20191 0.86986 0.93797 0.80394 0.94091 1.21789 1.38303 1.13610 0.89962 0.91783 1.25880 0.93877 0.96514 1.01562 1.70798 1.34212 1.15910 1.33201 0.83425 0.76270 0.75162 0.74754 1.20537 1.21128 1.21161 1.23253 0.98152 1.01678 0.93473 1.22745 1.01412 0.93375 1.04200 1.23264 1.02915 0.94516 1.03939 0.90961 0.92041 0.92208 0.87960 0.88846 0.87831 0.88772 0.90461 0.89248 0.91150 0.86047 0.89466 0.90088 0.90201 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.76 37.16 0.33 -1.52 16 2 C -0.07 -0.81 1.95 -90.53 -0.18 -0.99 16 3 H 0.09 1.13 7.98 -51.93 -0.41 0.72 16 4 C -0.16 -1.50 5.45 -27.49 -0.15 -1.65 16 5 C 0.36 3.92 6.72 -28.48 -0.19 3.73 16 6 O -0.46 -6.51 17.89 6.00 0.11 -6.41 16 7 C -0.17 -1.52 6.17 -27.48 -0.17 -1.69 16 8 C -0.11 -1.20 5.19 -26.63 -0.14 -1.34 16 9 C -0.08 -1.10 2.09 -91.82 -0.19 -1.29 16 10 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 11 C 0.46 8.49 4.92 36.00 0.18 8.67 16 12 O -0.51 -10.77 12.70 -18.75 -0.24 -11.01 16 13 O -0.34 -7.49 8.38 -39.26 -0.33 -7.82 16 14 C 0.24 6.04 2.12 -27.88 -0.06 5.98 16 15 H 0.04 1.16 7.02 -51.93 -0.36 0.79 16 16 C -0.60 -16.36 8.90 -34.44 -0.31 -16.67 16 17 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 18 C 0.03 0.72 5.20 -17.82 -0.09 0.63 16 19 N -0.91 -26.08 12.85 55.43 0.71 -25.36 16 20 Si 1.08 24.00 29.90 -169.99 -5.08 18.91 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.15 -3.43 4.66 -90.62 -0.42 -3.85 16 25 C -0.18 -3.52 9.80 -26.70 -0.26 -3.78 16 26 C -0.21 -4.20 9.84 -26.69 -0.26 -4.46 16 27 H 0.07 1.06 5.04 -51.93 -0.26 0.79 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.28 7.97 5.72 -40.82 -0.23 7.73 16 37 H 0.12 3.12 6.17 -51.93 -0.32 2.80 16 38 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.10 2.02 3.65 -51.93 -0.19 1.83 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -31.28 324.66 -7.86 -39.14 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.00 Total: 5.88 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.92 Total: -18.22 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.71 Total: -25.36 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.46 Total: -25.24 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.28 -7.86 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.792 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds