Wall clock time and date at job start Tue Mar 31 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.48980 * 2 1 4 4 C 1.53221 * 109.48408 * 239.96709 * 2 1 3 5 5 C 1.51267 * 108.53796 * 185.39042 * 4 2 1 6 6 O 1.20760 * 120.85037 * 231.32409 * 5 4 2 7 7 C 1.51266 * 118.30028 * 51.34434 * 5 4 2 8 8 C 1.53238 * 108.48494 * 308.61121 * 7 5 4 9 9 C 1.52954 * 109.48392 * 120.02601 * 2 1 3 10 10 H 1.09003 * 109.41317 * 63.55048 * 9 2 1 11 11 C 1.50696 * 109.41701 * 303.69076 * 9 2 1 12 12 O 1.20821 * 120.00147 * 324.68990 * 11 9 2 13 13 O 1.34232 * 120.00131 * 144.69232 * 11 9 2 14 14 C 1.45195 * 116.99997 * 179.97438 * 13 11 9 15 15 H 1.08993 * 109.47413 * 330.00244 * 14 13 11 16 16 C 1.50700 * 109.47362 * 209.99695 * 14 13 11 17 17 H 1.08007 * 119.99757 * 0.02562 * 16 14 13 18 18 C 1.37877 * 120.00520 * 179.97438 * 16 14 13 19 19 N 1.31520 * 119.99435 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00370 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47359 * 180.02562 * 20 18 16 22 22 H 1.48508 * 109.47369 * 300.00479 * 20 18 16 23 23 H 1.48496 * 109.47195 * 60.00376 * 20 18 16 24 24 C 1.53001 * 109.46859 * 90.00339 * 14 13 11 25 25 C 1.52994 * 117.50232 * 8.74488 * 24 14 13 26 26 C 1.52998 * 117.49783 * 300.08292 * 24 14 13 27 27 H 1.08996 * 109.47221 * 305.48437 * 1 2 3 28 28 H 1.08994 * 109.47003 * 65.49215 * 1 2 3 29 29 H 1.09002 * 109.46339 * 185.48927 * 1 2 3 30 30 H 1.09005 * 109.62544 * 305.09988 * 4 2 1 31 31 H 1.08997 * 109.63103 * 65.67466 * 4 2 1 32 32 H 1.09003 * 109.62866 * 68.36831 * 7 5 4 33 33 H 1.08997 * 109.62630 * 188.74822 * 7 5 4 34 34 H 1.09004 * 109.54558 * 294.72361 * 8 7 5 35 35 H 1.09001 * 109.43264 * 174.67841 * 8 7 5 36 36 H 0.96997 * 120.00323 * 359.97438 * 19 18 16 37 37 H 1.09000 * 115.55004 * 154.41808 * 24 14 13 38 38 H 1.09007 * 117.49562 * 359.97438 * 25 24 14 39 39 H 1.08995 * 117.50243 * 145.01963 * 25 24 14 40 40 H 1.09003 * 117.49961 * 214.97896 * 26 24 14 41 41 H 1.09000 * 117.50114 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7230 -1.2505 5 6 3.5476 -0.8282 -1.1633 6 8 4.2476 -0.4682 -2.0792 7 6 4.1549 -1.3962 0.1003 8 6 3.5671 -0.6472 1.3010 9 6 2.0402 -0.7215 1.2484 10 1 1.7294 -1.7658 1.2158 11 6 1.4641 -0.0656 2.4768 12 8 1.2905 1.1299 2.4981 13 8 1.1438 -0.8095 3.5472 14 6 0.5941 -0.1105 4.6950 15 1 0.9972 0.9015 4.7314 16 6 0.9671 -0.8455 5.9567 17 1 1.5585 -1.7476 5.9014 18 6 0.5543 -0.3660 7.1817 19 7 -0.1655 0.7327 7.2490 20 14 1.0172 -1.2766 8.7455 21 1 0.4549 -0.5619 9.9195 22 1 0.4680 -2.6555 8.6965 23 1 2.4962 -1.3369 8.8639 24 6 -0.9297 -0.0485 4.5726 25 6 -1.5825 -0.8644 3.4551 26 6 -1.5117 0.6610 3.3484 27 1 -0.3633 0.5965 0.8368 28 1 -0.3633 0.4263 -0.9350 29 1 -0.3632 -1.0230 0.0983 30 1 1.6067 -1.7215 -1.2994 31 1 1.7646 -0.1565 -2.1397 32 1 3.9161 -2.4570 0.1766 33 1 5.2367 -1.2652 0.0776 34 1 3.8815 0.3961 1.2696 35 1 3.9219 -1.1062 2.2238 36 1 -0.4055 1.2058 6.4370 37 1 -1.4736 0.0425 5.5128 38 1 -0.9262 -1.4451 2.8067 39 1 -2.5559 -1.3099 3.6599 40 1 -2.4388 1.2183 3.4831 41 1 -0.8091 1.0839 2.6304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:56 Heat of formation + Delta-G solvation = -138.901143 kcal Electronic energy + Delta-G solvation = -23103.186166 eV Core-core repulsion = 19754.514479 eV Total energy + Delta-G solvation = -3348.671688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06462 -40.77224 -38.87018 -37.50114 -36.61417 -35.09953 -33.64101 -30.90800 -29.29753 -28.04298 -25.61668 -24.33057 -23.35647 -22.96427 -21.64860 -20.78267 -20.25884 -19.54409 -18.63750 -17.72244 -17.23954 -16.59742 -16.49614 -15.98411 -15.80784 -15.63149 -15.32315 -14.85017 -14.81314 -14.36967 -14.03836 -13.90145 -13.37895 -13.35056 -13.22521 -12.96964 -12.82760 -12.67819 -12.57420 -12.41001 -12.04164 -11.93054 -11.89278 -11.69384 -11.65993 -11.49216 -11.32381 -10.96718 -10.51683 -10.46858 -10.39234 -8.72613 -6.50221 0.88410 1.26251 1.54903 1.62755 1.82238 1.92147 2.55396 2.93866 3.08188 3.10479 3.38504 3.52894 3.68534 3.85537 3.91774 4.06742 4.10204 4.13594 4.16735 4.24635 4.26851 4.43069 4.55813 4.61248 4.66422 4.69607 4.81650 4.82583 4.85867 4.95216 5.02400 5.04372 5.13976 5.16978 5.23453 5.25376 5.38470 5.61026 5.90155 6.12693 6.40425 6.44184 6.93216 7.30191 8.64160 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004921 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.432263 B = 5688.101760 C = 6449.934123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.065 4.065 3 H 0.066 0.934 4 C -0.153 4.153 5 C 0.365 3.635 6 O -0.498 6.498 7 C -0.156 4.156 8 C -0.103 4.103 9 C -0.077 4.077 10 H 0.134 0.866 11 C 0.454 3.546 12 O -0.543 6.543 13 O -0.350 6.350 14 C 0.245 3.755 15 H -0.003 1.003 16 C -0.616 4.616 17 H 0.061 0.939 18 C -0.018 4.018 19 N -0.928 5.928 20 Si 1.123 2.877 21 H -0.283 1.283 22 H -0.265 1.265 23 H -0.269 1.269 24 C -0.181 4.181 25 C -0.151 4.151 26 C -0.196 4.196 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -7.559 -14.771 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.084 4.084 3 H 0.085 0.915 4 C -0.190 4.190 5 C 0.244 3.756 6 O -0.374 6.374 7 C -0.194 4.194 8 C -0.141 4.141 9 C -0.096 4.096 10 H 0.152 0.848 11 C 0.299 3.701 12 O -0.434 6.434 13 O -0.266 6.266 14 C 0.192 3.808 15 H 0.014 0.986 16 C -0.653 4.653 17 H 0.079 0.921 18 C -0.217 4.217 19 N -0.565 5.565 20 Si 0.943 3.057 21 H -0.208 1.208 22 H -0.190 1.190 23 H -0.195 1.195 24 C -0.200 4.200 25 C -0.188 4.188 26 C -0.232 4.232 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.634 -6.979 -13.572 15.487 hybrid contribution -0.064 0.854 -1.160 1.442 sum 2.570 -6.125 -14.732 16.160 Atomic orbital electron populations 1.21997 0.93471 1.03236 1.02714 1.20927 0.97136 0.99171 0.91162 0.91516 1.22373 0.92912 1.05152 0.98553 1.25308 0.92310 0.71312 0.86709 1.90411 1.66282 1.39462 1.41215 1.22288 1.02257 1.03316 0.91500 1.21429 0.91208 1.01657 0.99774 1.21348 0.96904 1.03007 0.88300 0.84825 1.24364 0.74105 0.86147 0.85455 1.90568 1.51834 1.18051 1.82961 1.86506 1.72923 1.42786 1.24343 1.19728 0.88316 0.91387 0.81413 0.98584 1.22124 1.38264 1.13552 0.91400 0.92059 1.27359 0.93024 0.96415 1.04949 1.70897 1.35843 1.17129 1.32590 0.82872 0.76987 0.74909 0.70971 1.20792 1.18957 1.19462 1.22911 0.96735 1.06494 0.93825 1.22852 1.01906 0.92964 1.01058 1.23264 1.02929 0.95591 1.01436 0.94303 0.90156 0.90508 0.84627 0.88152 0.84603 0.88239 0.92091 0.89406 0.92492 0.88866 0.88371 0.87788 0.88684 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.76 71.98 0.63 -2.67 16 2 C -0.07 -1.37 1.95 -10.73 -0.02 -1.39 16 3 H 0.07 1.69 7.98 -2.39 -0.02 1.67 16 4 C -0.15 -2.28 5.45 30.10 0.16 -2.12 16 5 C 0.37 6.94 6.72 29.46 0.20 7.14 16 6 O -0.50 -13.24 17.89 -1.45 -0.03 -13.26 16 7 C -0.16 -2.40 6.17 30.11 0.19 -2.22 16 8 C -0.10 -2.20 5.19 30.66 0.16 -2.04 16 9 C -0.08 -1.84 2.09 -11.57 -0.02 -1.86 16 10 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 11 C 0.45 16.84 4.92 71.23 0.35 17.19 16 12 O -0.54 -23.60 12.70 21.98 0.28 -23.32 16 13 O -0.35 -15.38 8.38 -51.44 -0.43 -15.81 16 14 C 0.25 12.84 2.12 29.85 0.06 12.90 16 15 H 0.00 -0.21 7.02 -2.39 -0.02 -0.22 16 16 C -0.62 -34.47 8.90 25.60 0.23 -34.24 16 17 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 18 C -0.02 -1.03 5.20 84.65 0.44 -0.59 16 19 N -0.93 -55.35 12.85 21.45 0.28 -55.07 16 20 Si 1.12 48.25 29.90 68.60 2.05 50.30 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 C -0.18 -8.63 4.66 -10.80 -0.05 -8.68 16 25 C -0.15 -5.66 9.80 30.62 0.30 -5.36 16 26 C -0.20 -7.81 9.84 30.62 0.30 -7.51 16 27 H 0.04 1.09 5.04 -2.39 -0.01 1.08 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.26 16.07 5.72 -92.71 -0.53 15.54 16 37 H 0.09 4.98 6.17 -2.39 -0.01 4.97 16 38 H 0.10 3.45 6.91 -2.38 -0.02 3.43 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.10 3.94 3.65 -2.39 -0.01 3.93 16 Total: -1.00 -71.78 324.66 6.34 -65.44 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.27 Total: 23.16 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 2.93 Total: -31.43 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.18 Total: -52.39 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.30 kcal Total: -71.78 6.34 -65.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.466 kcal (2) G-P(sol) polarization free energy of solvation -71.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds