Wall clock time and date at job start Tue Mar 31 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.49304 * 2 1 4 4 C 1.53233 * 109.48337 * 239.96669 * 2 1 3 5 5 C 1.51273 * 108.53350 * 185.39255 * 4 2 1 6 6 O 1.20767 * 120.84503 * 231.32306 * 5 4 2 7 7 C 1.51261 * 118.30372 * 51.34765 * 5 4 2 8 8 C 1.53089 * 108.49829 * 308.64407 * 7 5 4 9 9 C 1.52960 * 109.47879 * 54.67838 * 8 7 5 10 10 H 1.09001 * 109.40954 * 56.43418 * 9 8 7 11 11 C 1.50698 * 109.41686 * 176.29038 * 9 8 7 12 12 O 1.20831 * 119.99551 * 85.26499 * 11 9 8 13 13 O 1.34220 * 120.00258 * 265.26844 * 11 9 8 14 14 C 1.45208 * 116.99874 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.46760 * 30.00348 * 14 13 11 16 16 C 1.50705 * 109.46696 * 150.00372 * 14 13 11 17 17 H 1.07997 * 120.00250 * 121.42943 * 16 14 13 18 18 C 1.37876 * 119.99745 * 301.42052 * 16 14 13 19 19 N 1.31515 * 119.99666 * 171.73763 * 18 16 14 20 20 Si 1.86803 * 120.00327 * 351.73820 * 18 16 14 21 21 H 1.48496 * 109.47148 * 93.17860 * 20 18 16 22 22 H 1.48495 * 109.47075 * 213.17957 * 20 18 16 23 23 H 1.48500 * 109.46980 * 333.18053 * 20 18 16 24 24 C 1.53000 * 109.46907 * 269.99933 * 14 13 11 25 25 C 1.53005 * 117.49174 * 133.92271 * 24 14 13 26 26 C 1.52998 * 59.99939 * 252.50815 * 25 24 14 27 27 H 1.08999 * 109.47432 * 305.91915 * 1 2 3 28 28 H 1.09000 * 109.47295 * 65.92179 * 1 2 3 29 29 H 1.09001 * 109.47506 * 185.92424 * 1 2 3 30 30 H 1.08992 * 109.62140 * 305.10453 * 4 2 1 31 31 H 1.09000 * 109.62327 * 65.67787 * 4 2 1 32 32 H 1.09005 * 109.62476 * 68.36547 * 7 5 4 33 33 H 1.08996 * 109.62801 * 188.74381 * 7 5 4 34 34 H 1.09004 * 109.50640 * 294.64186 * 8 7 5 35 35 H 1.09000 * 109.38730 * 174.64270 * 8 7 5 36 36 H 0.97005 * 120.00018 * 179.97438 * 19 18 16 37 37 H 1.08994 * 115.55459 * 279.62104 * 24 14 13 38 38 H 1.09000 * 117.50022 * 359.97438 * 25 24 14 39 39 H 1.08999 * 117.49690 * 145.02045 * 25 24 14 40 40 H 1.08998 * 117.50100 * 252.51567 * 26 25 24 41 41 H 1.08999 * 117.49766 * 107.48584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0410 -0.7230 -1.2506 5 6 3.5475 -0.8282 -1.1633 6 8 4.2475 -0.4683 -2.0792 7 6 4.1548 -1.3963 0.1003 8 6 3.5671 -0.6488 1.3001 9 6 2.0401 -0.7217 1.2484 10 1 1.7282 -1.7656 1.2163 11 6 1.4654 -0.0647 2.4769 12 8 1.2882 1.1304 2.4959 13 8 1.1504 -0.8071 3.5498 14 6 0.6017 -0.1071 4.6977 15 1 0.0531 0.7718 4.3590 16 6 -0.3311 -1.0240 5.4463 17 1 -0.1443 -1.2536 6.4849 18 6 -1.4230 -1.5696 4.8052 19 7 -2.1434 -2.4928 5.4038 20 14 -1.8793 -0.9974 3.0865 21 1 -1.2427 -1.8879 2.0830 22 1 -3.3546 -1.0443 2.9246 23 1 -1.4032 0.3948 2.8856 24 6 1.7407 0.3273 5.6223 25 6 1.7107 1.7617 6.1540 26 6 2.7304 1.3632 5.0853 27 1 -0.3634 0.6029 0.8322 28 1 -0.3634 0.4193 -0.9382 29 1 -0.3634 -1.0222 0.1061 30 1 1.6065 -1.7214 -1.2994 31 1 1.7644 -0.1564 -2.1398 32 1 3.9159 -2.4571 0.1764 33 1 5.2366 -1.2654 0.0775 34 1 3.8826 0.3941 1.2693 35 1 3.9220 -1.1091 2.2223 36 1 -2.9118 -2.8765 4.9529 37 1 2.1311 -0.4466 6.2830 38 1 0.8798 2.3958 5.8448 39 1 2.0814 1.9315 7.1649 40 1 3.7720 1.2708 5.3930 41 1 2.5702 1.7349 4.0733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:58 Heat of formation + Delta-G solvation = -134.800316 kcal Electronic energy + Delta-G solvation = -23323.335692 eV Core-core repulsion = 19974.841829 eV Total energy + Delta-G solvation = -3348.493863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92503 -40.70283 -38.74320 -37.44076 -36.70453 -34.84348 -33.67184 -31.09847 -30.13937 -28.11692 -25.32254 -24.23445 -23.21526 -23.04117 -21.46103 -20.98190 -20.24081 -19.24237 -18.66389 -17.55769 -17.38088 -16.63336 -16.59449 -16.23442 -15.79893 -15.70833 -15.52444 -14.93142 -14.72183 -14.32047 -14.08087 -13.77391 -13.55257 -13.26394 -13.21298 -13.17218 -13.01068 -12.81447 -12.51448 -12.34866 -12.18142 -11.97970 -11.91034 -11.84138 -11.67879 -11.29325 -11.20971 -11.01315 -10.85386 -10.73207 -10.46269 -8.49601 -6.59497 0.88925 1.19956 1.23155 1.33226 1.39109 1.91562 2.21169 2.96363 2.98944 3.09819 3.40448 3.54158 3.75866 3.84766 3.91701 4.07114 4.12773 4.18108 4.23172 4.25757 4.30223 4.38469 4.50322 4.57471 4.60206 4.74511 4.76471 4.83562 4.86496 4.95866 4.98346 5.01388 5.10759 5.16738 5.22237 5.26333 5.33109 5.34783 5.92700 6.13663 6.44421 6.49238 7.01858 7.12559 8.63554 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.006843 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.314684 B = 4090.600391 C = 5021.829620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.064 4.064 3 H 0.079 0.921 4 C -0.156 4.156 5 C 0.368 3.632 6 O -0.495 6.495 7 C -0.158 4.158 8 C -0.096 4.096 9 C -0.092 4.092 10 H 0.119 0.881 11 C 0.451 3.549 12 O -0.539 6.539 13 O -0.362 6.362 14 C 0.217 3.783 15 H 0.029 0.971 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.043 3.957 19 N -0.915 5.915 20 Si 0.921 3.079 21 H -0.242 1.242 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.169 4.169 25 C -0.162 4.162 26 C -0.177 4.177 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.274 0.726 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 2.150 -11.384 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.083 4.083 3 H 0.098 0.902 4 C -0.194 4.194 5 C 0.246 3.754 6 O -0.371 6.371 7 C -0.195 4.195 8 C -0.134 4.134 9 C -0.111 4.111 10 H 0.137 0.863 11 C 0.296 3.704 12 O -0.431 6.431 13 O -0.278 6.278 14 C 0.165 3.835 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.160 4.160 19 N -0.553 5.553 20 Si 0.745 3.255 21 H -0.166 1.166 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.188 4.188 25 C -0.199 4.199 26 C -0.214 4.214 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.364 2.561 -11.802 15.914 hybrid contribution -0.959 0.207 0.027 0.982 sum 9.405 2.768 -11.775 15.322 Atomic orbital electron populations 1.22107 0.95025 1.02338 1.02895 1.20917 0.95947 0.99884 0.91541 0.90228 1.22388 0.93551 1.04805 0.98629 1.25227 0.91868 0.71369 0.86892 1.90408 1.66084 1.39479 1.41129 1.22279 1.02492 1.03139 0.91633 1.21371 0.90100 1.02138 0.99753 1.21442 0.97976 1.02514 0.89194 0.86329 1.24158 0.74314 0.86326 0.85627 1.90518 1.51512 1.17517 1.83514 1.86847 1.72502 1.44091 1.24408 1.20248 0.90482 0.92267 0.80522 0.95292 1.21157 1.06985 1.30356 0.97587 0.92387 1.25749 0.95512 0.93281 1.01472 1.70022 1.18808 1.25956 1.40476 0.86161 0.77595 0.80248 0.81514 1.16623 1.21042 1.19032 1.22515 1.00052 0.93151 1.03045 1.22922 1.01536 0.95981 0.99508 1.23159 0.96100 1.02779 0.99324 0.94847 0.89330 0.91954 0.85494 0.87957 0.85224 0.87645 0.91059 0.88766 0.91659 0.88196 0.89985 0.86606 0.86931 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 8.51 71.98 0.61 -3.82 16 2 C -0.06 -1.52 1.95 -10.73 -0.02 -1.54 16 3 H 0.08 2.04 7.97 -2.39 -0.02 2.02 16 4 C -0.16 -2.74 5.45 30.11 0.16 -2.57 16 5 C 0.37 7.31 6.72 29.46 0.20 7.50 16 6 O -0.50 -13.25 17.89 -1.47 -0.03 -13.27 16 7 C -0.16 -2.47 6.17 30.06 0.19 -2.28 16 8 C -0.10 -1.97 5.18 30.61 0.16 -1.81 16 9 C -0.09 -2.43 2.10 -11.57 -0.02 -2.45 16 10 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 11 C 0.45 16.89 4.53 71.24 0.32 17.22 16 12 O -0.54 -22.31 12.45 21.95 0.27 -22.04 16 13 O -0.36 -16.01 8.24 -51.32 -0.42 -16.43 16 14 C 0.22 10.46 1.54 29.85 0.05 10.51 16 15 H 0.03 1.52 5.80 -2.39 -0.01 1.50 16 16 C -0.52 -29.59 9.35 25.60 0.24 -29.35 16 17 H 0.06 3.53 7.99 -2.91 -0.02 3.51 16 18 C 0.04 2.43 5.45 84.65 0.46 2.89 16 19 N -0.91 -54.52 13.96 21.45 0.30 -54.22 16 20 Si 0.92 43.88 24.84 68.60 1.70 45.58 16 21 H -0.24 -10.43 6.84 99.48 0.68 -9.75 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.27 -12.90 6.18 99.48 0.61 -12.28 16 24 C -0.17 -6.89 5.30 -10.79 -0.06 -6.95 16 25 C -0.16 -5.62 10.18 30.60 0.31 -5.31 16 26 C -0.18 -5.95 9.82 30.59 0.30 -5.65 16 27 H 0.03 1.13 5.83 -2.39 -0.01 1.11 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.62 7.88 -2.39 -0.02 1.60 16 30 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 37 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.08 2.97 8.08 -2.39 -0.02 2.96 16 39 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.09 3.33 5.58 -2.39 -0.01 3.32 16 Total: -1.00 -69.20 326.74 5.62 -63.58 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.90 Total: 20.42 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 2.90 Total: -23.62 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.30 Total: -54.22 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.18 Total: -51.74 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.70 Total: 45.58 kcal Total: -69.20 5.62 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.225 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds