Wall clock time and date at job start Tue Mar 31 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 H 1.09000 * 109.46991 * 305.00150 * 3 2 1 5 5 C 1.53004 * 109.47145 * 64.99902 * 3 2 1 6 6 C 1.52999 * 109.47217 * 185.00155 * 3 2 1 7 7 C 1.53000 * 109.47302 * 175.00177 * 6 3 2 8 8 C 1.50695 * 109.47047 * 180.02562 * 7 6 3 9 9 O 1.20825 * 120.00536 * 359.97438 * 8 7 6 10 10 O 1.34232 * 119.99791 * 179.97438 * 8 7 6 11 11 C 1.45206 * 116.99998 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47122 * 29.99711 * 11 10 8 13 13 C 1.50699 * 109.47021 * 269.99796 * 11 10 8 14 14 H 1.08000 * 119.99792 * 119.99974 * 13 11 10 15 15 C 1.37870 * 120.00084 * 299.99764 * 13 11 10 16 16 N 1.31522 * 120.00129 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00336 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47039 * 60.00269 * 17 15 13 19 19 H 1.48500 * 109.47330 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47142 * 300.00337 * 17 15 13 21 21 C 1.50703 * 109.47147 * 149.99715 * 11 10 8 22 22 C 1.34513 * 125.78950 * 219.71396 * 21 11 10 23 23 C 1.41384 * 106.84042 * 179.88762 * 22 21 11 24 24 C 1.34515 * 106.84042 * 0.37661 * 23 22 21 25 25 O 1.34301 * 125.78622 * 40.02606 * 21 11 10 26 26 H 1.08995 * 109.47117 * 59.99792 * 1 2 3 27 27 H 1.08994 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46821 * 300.00144 * 1 2 3 29 29 H 1.08999 * 109.46821 * 239.99856 * 2 1 3 30 30 H 1.09003 * 109.47006 * 119.99898 * 2 1 3 31 31 H 1.09006 * 109.46929 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47147 * 299.99853 * 5 3 2 33 33 H 1.09000 * 109.46974 * 60.00238 * 5 3 2 34 34 H 1.08994 * 109.47195 * 54.99631 * 6 3 2 35 35 H 1.09007 * 109.47043 * 294.99854 * 6 3 2 36 36 H 1.08994 * 109.47441 * 59.99604 * 7 6 3 37 37 H 1.09007 * 109.46807 * 299.99821 * 7 6 3 38 38 H 0.96999 * 120.00258 * 179.97438 * 16 15 13 39 39 H 1.08000 * 126.58120 * 0.02812 * 22 21 11 40 40 H 1.07999 * 126.57949 * 180.16286 * 23 22 21 41 41 H 1.07991 * 125.79054 * 179.74374 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1258 7 6 4.0646 2.8849 -0.2511 8 6 5.5664 2.8866 -0.3756 9 8 6.1747 1.8427 -0.3647 10 8 6.2283 4.0479 -0.4986 11 6 7.6739 3.9737 -0.6134 12 1 7.9524 3.0377 -1.0977 13 6 8.2905 4.0315 0.7604 14 1 8.9002 3.2129 1.1134 15 6 8.0763 5.1292 1.5666 16 7 7.3334 6.1258 1.1368 17 14 8.8400 5.2005 3.2698 18 1 10.3185 5.1243 3.1530 19 1 8.4613 6.4761 3.9292 20 1 8.3481 4.0581 4.0811 21 6 8.1726 5.1331 -1.4370 22 6 9.1553 5.0815 -2.3540 23 6 9.2920 6.3861 -2.8817 24 6 8.3903 7.1586 -2.2497 25 8 7.7150 6.3943 -1.3757 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9991 3.1541 1.3075 32 1 0.5489 2.1253 1.3969 33 1 2.0699 1.5875 2.1492 34 1 3.8571 0.8800 -1.0113 35 1 4.0030 0.9835 0.7597 36 1 3.7724 3.4492 0.6344 37 1 3.6264 3.3457 -1.1365 38 1 7.1824 6.8980 1.7041 39 1 9.7284 4.2103 -2.6350 40 1 9.9892 6.7024 -3.6434 41 1 8.2358 8.2143 -2.4164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949152.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:50 Heat of formation + Delta-G solvation = -111.673730 kcal Electronic energy + Delta-G solvation = -22166.976608 eV Core-core repulsion = 18819.485590 eV Total energy + Delta-G solvation = -3347.491019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03782 -41.04117 -38.29560 -37.16362 -34.92729 -33.58001 -33.26840 -31.65696 -29.72075 -28.40082 -26.94547 -25.14909 -23.59816 -22.32100 -21.28085 -21.12573 -20.72492 -19.00272 -18.25469 -17.98346 -17.19676 -16.79121 -16.57562 -16.25047 -15.92347 -15.46259 -14.82555 -14.77446 -14.41368 -14.20648 -13.65296 -13.53411 -13.39882 -13.36281 -13.07498 -12.94671 -12.82917 -12.76467 -12.61857 -12.47663 -12.22750 -11.85865 -11.83421 -11.47725 -11.39433 -11.29102 -11.23350 -10.95170 -10.78018 -10.49518 -9.09390 -8.22826 -6.53585 1.17640 1.36204 1.38479 1.45435 1.55876 1.90165 2.29416 2.32772 2.60431 3.07412 3.81986 3.84587 3.95773 4.13843 4.28476 4.33730 4.39582 4.44160 4.47884 4.57125 4.59119 4.71313 4.75839 4.79225 4.91630 5.08063 5.11731 5.13113 5.20600 5.22891 5.25440 5.28112 5.34700 5.42833 5.56739 5.58844 5.60084 5.79246 5.90126 6.03211 6.50457 6.72623 7.14531 7.27227 8.75010 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.004634 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.044927 B = 6040.199563 C = 6945.114980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.095 4.095 7 C -0.106 4.106 8 C 0.445 3.555 9 O -0.561 6.561 10 O -0.352 6.352 11 C 0.277 3.723 12 H 0.056 0.944 13 C -0.581 4.581 14 H 0.058 0.942 15 C 0.043 3.957 16 N -0.844 5.844 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.038 3.962 22 C -0.266 4.266 23 C -0.220 4.220 24 C -0.083 4.083 25 O -0.141 6.141 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.171 0.829 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 -2.828 -3.583 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.101 0.899 5 C -0.211 4.211 6 C -0.132 4.132 7 C -0.143 4.143 8 C 0.291 3.709 9 O -0.454 6.454 10 O -0.268 6.268 11 C 0.224 3.776 12 H 0.074 0.926 13 C -0.617 4.617 14 H 0.076 0.924 15 C -0.165 4.165 16 N -0.476 5.476 17 Si 0.779 3.221 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.014 4.014 22 C -0.286 4.286 23 C -0.238 4.238 24 C -0.151 4.151 25 O -0.033 6.033 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.537 -2.795 -3.366 11.409 hybrid contribution 1.173 -0.063 0.803 1.423 sum -9.364 -2.859 -2.563 10.121 Atomic orbital electron populations 1.21798 0.94669 1.01962 1.02276 1.21559 0.96794 0.95510 1.01886 1.21147 0.92718 0.97212 0.99248 0.89899 1.21976 1.02051 1.00361 0.96667 1.21421 0.96246 0.93305 1.02263 1.21532 0.85522 1.01082 1.06213 1.24468 0.93159 0.81748 0.71549 1.90503 1.71505 1.34475 1.48897 1.86704 1.25066 1.34194 1.80822 1.18577 0.75741 0.89030 0.94204 0.92648 1.21367 1.34592 1.05475 1.00251 0.92377 1.25778 0.94418 0.94420 1.01928 1.70144 1.33916 1.06432 1.37124 0.85674 0.79157 0.77946 0.79332 1.19498 1.19504 1.19771 1.22738 0.97810 0.84560 0.96330 1.21581 1.03957 1.00298 1.02716 1.21907 1.03962 0.92585 1.05387 1.24759 0.97513 0.98886 0.93936 1.84408 1.51611 1.18273 1.49046 0.92317 0.92337 0.92143 0.92091 0.92465 0.92779 0.90909 0.93298 0.91933 0.92900 0.87504 0.86427 0.92125 0.83761 0.81193 0.75845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 71.98 0.70 -1.54 16 2 C -0.12 -2.24 5.40 30.59 0.17 -2.07 16 3 C -0.08 -1.78 2.39 -10.79 -0.03 -1.80 16 4 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.15 -3.10 8.70 71.98 0.63 -2.47 16 6 C -0.09 -2.68 3.97 30.59 0.12 -2.56 16 7 C -0.11 -3.47 5.57 29.85 0.17 -3.30 16 8 C 0.44 20.45 7.92 71.23 0.56 21.01 16 9 O -0.56 -28.34 15.20 21.97 0.33 -28.01 16 10 O -0.35 -18.55 9.26 -49.50 -0.46 -19.00 16 11 C 0.28 15.16 2.58 29.10 0.08 15.24 16 12 H 0.06 3.05 7.15 -2.38 -0.02 3.03 16 13 C -0.58 -33.50 8.90 25.60 0.23 -33.27 16 14 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 15 C 0.04 2.38 5.24 84.65 0.44 2.82 16 16 N -0.84 -47.03 10.45 21.45 0.22 -46.80 16 17 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 C 0.04 1.98 5.68 24.83 0.14 2.12 16 22 C -0.27 -11.84 10.80 22.19 0.24 -11.60 16 23 C -0.22 -8.24 10.91 22.19 0.24 -8.00 16 24 C -0.08 -3.23 12.09 66.97 0.81 -2.42 16 25 O -0.14 -7.05 8.63 -1.36 -0.01 -7.07 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.85 6.56 -2.39 -0.02 0.84 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.15 6.56 -2.38 -0.02 1.14 16 32 H 0.07 1.20 6.57 -2.39 -0.02 1.18 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.05 1.67 8.10 -2.38 -0.02 1.65 16 36 H 0.11 3.36 6.56 -2.39 -0.02 3.35 16 37 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 38 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 39 H 0.14 5.85 8.06 -2.91 -0.02 5.82 16 40 H 0.17 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.23 6.43 8.06 -2.92 -0.02 6.40 16 Total: -1.00 -68.34 341.12 7.61 -60.73 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 1.00 Total: 22.69 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.49 Total: -27.84 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.22 Total: -46.80 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.14 Total: -54.08 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.34 7.61 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949152.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.944 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds