Wall clock time and date at job start Tue Mar 31 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 H 1.08996 * 109.47276 * 55.00309 * 3 2 1 5 5 C 1.52992 * 109.47251 * 294.99857 * 3 2 1 6 6 C 1.53007 * 109.46752 * 174.99845 * 3 2 1 7 7 C 1.52997 * 109.47056 * 184.99884 * 6 3 2 8 8 C 1.50701 * 109.47288 * 180.02562 * 7 6 3 9 9 O 1.20829 * 119.99893 * 0.02562 * 8 7 6 10 10 O 1.34227 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00081 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47110 * 330.00259 * 11 10 8 13 13 C 1.50697 * 109.47299 * 210.00112 * 11 10 8 14 14 H 1.07997 * 120.00271 * 273.48464 * 13 11 10 15 15 C 1.37874 * 119.99882 * 93.48462 * 13 11 10 16 16 N 1.31512 * 119.99999 * 181.27556 * 15 13 11 17 17 Si 1.86799 * 120.00227 * 1.27854 * 15 13 11 18 18 H 1.48503 * 109.47251 * 84.88057 * 17 15 13 19 19 H 1.48501 * 109.47396 * 204.88073 * 17 15 13 20 20 H 1.48505 * 109.46921 * 324.88065 * 17 15 13 21 21 C 1.50699 * 109.46697 * 90.00217 * 11 10 8 22 22 C 1.34513 * 125.78628 * 216.36616 * 21 11 10 23 23 C 1.41382 * 106.84218 * 179.89006 * 22 21 11 24 24 C 1.34514 * 106.83935 * 0.37153 * 23 22 21 25 25 O 1.34301 * 125.79268 * 36.67230 * 21 11 10 26 26 H 1.08999 * 109.47368 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47184 * 299.99972 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00151 * 1 2 3 29 29 H 1.08998 * 109.47184 * 240.00028 * 2 1 3 30 30 H 1.08997 * 109.47062 * 120.00311 * 2 1 3 31 31 H 1.09007 * 109.47465 * 299.99887 * 5 3 2 32 32 H 1.08998 * 109.47428 * 60.00408 * 5 3 2 33 33 H 1.09002 * 109.47503 * 180.02562 * 5 3 2 34 34 H 1.09006 * 109.46657 * 65.00275 * 6 3 2 35 35 H 1.08999 * 109.47092 * 305.00091 * 6 3 2 36 36 H 1.08996 * 109.47186 * 60.00101 * 7 6 3 37 37 H 1.08999 * 109.47338 * 300.00056 * 7 6 3 38 38 H 0.96999 * 120.00207 * 180.02562 * 16 15 13 39 39 H 1.08006 * 126.58409 * 0.02562 * 22 21 11 40 40 H 1.08002 * 126.58740 * 180.16032 * 23 22 21 41 41 H 1.08005 * 125.79338 * 179.75158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 6 4.0645 2.8849 0.2511 8 6 5.5665 2.8868 0.3744 9 8 6.1749 1.8429 0.3626 10 8 6.2284 4.0481 0.4972 11 6 7.6740 3.9740 0.6119 12 1 7.9525 3.0380 1.0963 13 6 8.1727 5.1334 1.4353 14 1 8.3858 6.0802 0.9613 15 6 8.3568 4.9856 2.7936 16 7 8.7681 6.0046 3.5162 17 14 8.0224 3.3380 3.6077 18 1 9.2256 2.4753 3.4922 19 1 7.7017 3.5505 5.0420 20 1 6.8739 2.6781 2.9362 21 6 8.2904 4.0315 -0.7620 22 6 9.3831 3.3571 -1.1628 23 6 9.6043 3.7025 -2.5158 24 6 8.6384 4.5738 -2.8585 25 8 7.8455 4.7693 -1.7922 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5875 -2.1492 32 1 0.5490 2.1253 -1.3969 33 1 1.9989 3.1541 -1.3075 34 1 4.0029 0.9836 -0.7597 35 1 3.8570 0.8800 1.0114 36 1 3.6264 3.3457 1.1365 37 1 3.7723 3.4493 -0.6344 38 1 8.8980 5.9005 4.4718 39 1 9.9762 2.6798 -0.5662 40 1 10.3986 3.3395 -3.1513 41 1 8.5207 5.0377 -3.8267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:53 Heat of formation + Delta-G solvation = -102.664724 kcal Electronic energy + Delta-G solvation = -22124.304750 eV Core-core repulsion = 18777.204392 eV Total energy + Delta-G solvation = -3347.100359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.82560 -39.57523 -37.34086 -35.65472 -33.14786 -32.31871 -32.25671 -30.52416 -28.85438 -27.13921 -25.94333 -23.33218 -22.40029 -21.09289 -20.22316 -19.84360 -19.38003 -17.49591 -17.08893 -16.58604 -15.87718 -15.56063 -15.13883 -15.05594 -14.67044 -14.11190 -13.89768 -13.58789 -13.25995 -12.85327 -12.62014 -12.30395 -12.12879 -12.11891 -12.01934 -11.80714 -11.74456 -11.52019 -11.29773 -11.01125 -10.95178 -10.61524 -10.58305 -10.46001 -10.18037 -9.78094 -9.75124 -9.58354 -9.24189 -8.97972 -7.73598 -6.50626 -4.59897 2.44296 2.98793 3.07779 3.19089 3.25653 3.29311 3.62713 3.79512 4.10370 4.67241 4.79112 4.81160 4.99598 5.18020 5.24167 5.36550 5.37929 5.46396 5.50180 5.58369 5.64142 5.72082 5.75164 5.82557 5.89362 5.93872 6.00415 6.04889 6.07701 6.18407 6.24492 6.37856 6.43191 6.44712 6.57536 6.75637 7.07945 7.14665 7.49242 7.89323 8.06631 8.60175 8.69771 9.06026 10.58176 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.005284 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.354786 B = 5297.569893 C = 6597.578259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.103 4.103 7 C -0.121 4.121 8 C 0.446 3.554 9 O -0.529 6.529 10 O -0.354 6.354 11 C 0.253 3.747 12 H 0.079 0.921 13 C -0.507 4.507 14 H 0.089 0.911 15 C 0.092 3.908 16 N -0.858 5.858 17 Si 0.871 3.129 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.258 1.258 21 C 0.032 3.968 22 C -0.229 4.229 23 C -0.210 4.210 24 C -0.072 4.072 25 O -0.168 6.168 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.276 0.724 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.196 -8.032 -7.966 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.090 0.910 5 C -0.210 4.210 6 C -0.141 4.141 7 C -0.159 4.159 8 C 0.290 3.710 9 O -0.420 6.420 10 O -0.271 6.271 11 C 0.202 3.798 12 H 0.096 0.904 13 C -0.542 4.542 14 H 0.107 0.893 15 C -0.117 4.117 16 N -0.492 5.492 17 Si 0.696 3.304 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.182 1.182 21 C -0.019 4.019 22 C -0.248 4.248 23 C -0.229 4.229 24 C -0.140 4.140 25 O -0.064 6.064 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.162 -8.034 -7.767 15.795 hybrid contribution 0.318 -0.844 0.395 0.985 sum -10.844 -8.879 -7.372 15.836 Atomic orbital electron populations 1.21824 0.96063 1.01304 1.01841 1.21563 0.95626 0.96422 1.02124 1.21193 0.95164 0.96207 0.98588 0.91009 1.21961 1.01035 1.00813 0.97143 1.21464 0.94192 0.94968 1.03433 1.21494 0.89792 0.99563 1.05061 1.23728 0.91561 0.83401 0.72321 1.90557 1.70554 1.33763 1.47156 1.87109 1.26154 1.33165 1.80645 1.19523 0.74799 1.00217 0.85283 0.90382 1.20799 1.42475 0.98527 0.92408 0.89260 1.25113 0.92579 0.97241 0.96791 1.69859 1.41394 1.30493 1.07495 0.86904 0.80531 0.83670 0.79318 1.19011 1.20175 1.18249 1.23320 0.96689 0.92613 0.89265 1.21370 1.00804 1.06748 0.95900 1.21667 1.01951 1.02809 0.96500 1.23830 0.94460 1.03750 0.91938 1.84072 1.48195 1.55328 1.18773 0.93069 0.92828 0.92532 0.91991 0.91971 0.92696 0.92628 0.92264 0.91174 0.91203 0.88340 0.88209 0.91414 0.84050 0.84201 0.78990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.16 0.36 -0.88 16 2 C -0.12 -1.14 5.40 -26.73 -0.14 -1.28 16 3 C -0.09 -0.98 2.39 -90.62 -0.22 -1.19 16 4 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -1.46 8.70 37.15 0.32 -1.14 16 6 C -0.10 -1.39 3.97 -26.73 -0.11 -1.50 16 7 C -0.12 -1.86 5.57 -27.88 -0.16 -2.02 16 8 C 0.45 9.50 7.85 36.01 0.28 9.78 16 9 O -0.53 -12.36 15.20 -18.75 -0.29 -12.64 16 10 O -0.35 -8.59 9.84 -41.81 -0.41 -9.00 16 11 C 0.25 6.48 1.96 -29.04 -0.06 6.42 16 12 H 0.08 2.03 4.56 -51.93 -0.24 1.80 16 13 C -0.51 -14.30 9.23 -34.44 -0.32 -14.62 16 14 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 15 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 16 N -0.86 -24.67 13.96 55.43 0.77 -23.89 16 17 Si 0.87 21.00 26.90 -169.99 -4.57 16.43 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.26 -6.32 6.91 56.52 0.39 -5.93 16 21 C 0.03 0.77 6.17 -35.63 -0.22 0.55 16 22 C -0.23 -4.90 10.81 -39.70 -0.43 -5.33 16 23 C -0.21 -3.79 10.91 -39.70 -0.43 -4.22 16 24 C -0.07 -1.28 12.09 29.42 0.36 -0.93 16 25 O -0.17 -3.74 10.64 2.90 0.03 -3.71 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 33 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 34 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.10 1.36 6.56 -51.93 -0.34 1.02 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.14 2.83 8.06 -52.48 -0.42 2.41 16 40 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.19 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -31.54 342.41 -6.40 -37.94 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.24 Total: 3.63 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.86 Total: -13.91 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.77 Total: -23.89 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.67 Total: -25.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.57 Total: 16.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.54 -6.40 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.726 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds