Wall clock time and date at job start Tue Mar 31 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 H 1.08996 * 109.47276 * 55.00309 * 3 2 1 5 5 C 1.52992 * 109.47251 * 294.99857 * 3 2 1 6 6 C 1.53007 * 109.46752 * 174.99845 * 3 2 1 7 7 C 1.52997 * 109.47056 * 184.99884 * 6 3 2 8 8 C 1.50701 * 109.47288 * 180.02562 * 7 6 3 9 9 O 1.20829 * 119.99893 * 0.02562 * 8 7 6 10 10 O 1.34227 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00081 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47110 * 330.00259 * 11 10 8 13 13 C 1.50697 * 109.47299 * 210.00112 * 11 10 8 14 14 H 1.07997 * 120.00271 * 273.48464 * 13 11 10 15 15 C 1.37874 * 119.99882 * 93.48462 * 13 11 10 16 16 N 1.31512 * 119.99999 * 181.27556 * 15 13 11 17 17 Si 1.86799 * 120.00227 * 1.27854 * 15 13 11 18 18 H 1.48503 * 109.47251 * 84.88057 * 17 15 13 19 19 H 1.48501 * 109.47396 * 204.88073 * 17 15 13 20 20 H 1.48505 * 109.46921 * 324.88065 * 17 15 13 21 21 C 1.50699 * 109.46697 * 90.00217 * 11 10 8 22 22 C 1.34513 * 125.78628 * 216.36616 * 21 11 10 23 23 C 1.41382 * 106.84218 * 179.89006 * 22 21 11 24 24 C 1.34514 * 106.83935 * 0.37153 * 23 22 21 25 25 O 1.34301 * 125.79268 * 36.67230 * 21 11 10 26 26 H 1.08999 * 109.47368 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47184 * 299.99972 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00151 * 1 2 3 29 29 H 1.08998 * 109.47184 * 240.00028 * 2 1 3 30 30 H 1.08997 * 109.47062 * 120.00311 * 2 1 3 31 31 H 1.09007 * 109.47465 * 299.99887 * 5 3 2 32 32 H 1.08998 * 109.47428 * 60.00408 * 5 3 2 33 33 H 1.09002 * 109.47503 * 180.02562 * 5 3 2 34 34 H 1.09006 * 109.46657 * 65.00275 * 6 3 2 35 35 H 1.08999 * 109.47092 * 305.00091 * 6 3 2 36 36 H 1.08996 * 109.47186 * 60.00101 * 7 6 3 37 37 H 1.08999 * 109.47338 * 300.00056 * 7 6 3 38 38 H 0.96999 * 120.00207 * 180.02562 * 16 15 13 39 39 H 1.08006 * 126.58409 * 0.02562 * 22 21 11 40 40 H 1.08002 * 126.58740 * 180.16032 * 23 22 21 41 41 H 1.08005 * 125.79338 * 179.75158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 6 4.0645 2.8849 0.2511 8 6 5.5665 2.8868 0.3744 9 8 6.1749 1.8429 0.3626 10 8 6.2284 4.0481 0.4972 11 6 7.6740 3.9740 0.6119 12 1 7.9525 3.0380 1.0963 13 6 8.1727 5.1334 1.4353 14 1 8.3858 6.0802 0.9613 15 6 8.3568 4.9856 2.7936 16 7 8.7681 6.0046 3.5162 17 14 8.0224 3.3380 3.6077 18 1 9.2256 2.4753 3.4922 19 1 7.7017 3.5505 5.0420 20 1 6.8739 2.6781 2.9362 21 6 8.2904 4.0315 -0.7620 22 6 9.3831 3.3571 -1.1628 23 6 9.6043 3.7025 -2.5158 24 6 8.6384 4.5738 -2.8585 25 8 7.8455 4.7693 -1.7922 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5875 -2.1492 32 1 0.5490 2.1253 -1.3969 33 1 1.9989 3.1541 -1.3075 34 1 4.0029 0.9836 -0.7597 35 1 3.8570 0.8800 1.0114 36 1 3.6264 3.3457 1.1365 37 1 3.7723 3.4493 -0.6344 38 1 8.8980 5.9005 4.4718 39 1 9.9762 2.6798 -0.5662 40 1 10.3986 3.3395 -3.1513 41 1 8.5207 5.0377 -3.8267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:52 Heat of formation + Delta-G solvation = -120.171276 kcal Electronic energy + Delta-G solvation = -22125.063892 eV Core-core repulsion = 18777.204392 eV Total energy + Delta-G solvation = -3347.859500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.43356 -41.30377 -38.39395 -37.37049 -35.20266 -33.93029 -33.39588 -32.24864 -29.77867 -28.90760 -26.98263 -24.95756 -23.69789 -22.64720 -21.69368 -21.04668 -20.76917 -19.54684 -18.74205 -18.31002 -17.49374 -17.05329 -16.75127 -16.39511 -16.08252 -15.37194 -15.26564 -14.80207 -14.57505 -14.37127 -13.97634 -13.71701 -13.70087 -13.58756 -13.37406 -13.17232 -12.96088 -12.78403 -12.69559 -12.50425 -12.06880 -11.92016 -11.85888 -11.60750 -11.53244 -11.43803 -11.34006 -11.30755 -11.06988 -10.80200 -9.35411 -8.63302 -6.78984 0.84017 1.17546 1.21482 1.28103 1.35630 1.70759 1.96031 2.08777 2.23572 2.90602 3.70387 3.75861 3.91962 3.99665 4.08536 4.15647 4.21785 4.24845 4.33339 4.46585 4.54935 4.59988 4.71698 4.75520 4.88661 4.90651 4.99849 5.03187 5.04331 5.09102 5.19245 5.20138 5.22464 5.25616 5.31049 5.55929 5.57881 5.63958 5.72258 5.99250 6.29175 6.34323 6.90037 6.93781 8.50590 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.005284 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.354786 B = 5297.569893 C = 6597.578259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.080 0.920 5 C -0.152 4.152 6 C -0.097 4.097 7 C -0.113 4.113 8 C 0.437 3.563 9 O -0.553 6.553 10 O -0.369 6.369 11 C 0.261 3.739 12 H 0.069 0.931 13 C -0.525 4.525 14 H 0.048 0.952 15 C 0.051 3.949 16 N -0.899 5.899 17 Si 0.930 3.070 18 H -0.254 1.254 19 H -0.257 1.257 20 H -0.267 1.267 21 C -0.018 4.018 22 C -0.232 4.232 23 C -0.214 4.214 24 C -0.057 4.057 25 O -0.191 6.191 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.283 0.717 39 H 0.147 0.853 40 H 0.181 0.819 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 -9.291 -9.377 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.098 0.902 5 C -0.209 4.209 6 C -0.135 4.135 7 C -0.150 4.150 8 C 0.283 3.717 9 O -0.445 6.445 10 O -0.286 6.286 11 C 0.209 3.791 12 H 0.086 0.914 13 C -0.561 4.561 14 H 0.066 0.934 15 C -0.155 4.155 16 N -0.535 5.535 17 Si 0.751 3.249 18 H -0.179 1.179 19 H -0.182 1.182 20 H -0.192 1.192 21 C -0.069 4.069 22 C -0.251 4.251 23 C -0.233 4.233 24 C -0.123 4.123 25 O -0.087 6.087 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.198 0.802 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.458 -9.293 -9.177 18.049 hybrid contribution 0.728 -0.439 0.653 1.072 sum -11.730 -9.732 -8.525 17.464 Atomic orbital electron populations 1.21801 0.94695 1.01952 1.02295 1.21560 0.96788 0.95591 1.01847 1.21157 0.92588 0.97219 0.99544 0.90199 1.21968 1.02122 1.00487 0.96366 1.21450 0.96447 0.93246 1.02340 1.21674 0.85011 1.01463 1.06871 1.24844 0.93699 0.82036 0.71169 1.90532 1.71546 1.34241 1.48184 1.86994 1.25444 1.34880 1.81278 1.19116 0.75226 0.98230 0.86540 0.91351 1.20799 1.44043 0.98027 0.93223 0.93389 1.25797 0.92145 1.00478 0.97033 1.69937 1.42912 1.32401 1.08222 0.86004 0.80320 0.79498 0.79041 1.17852 1.18152 1.19204 1.23076 0.98578 0.95605 0.89628 1.21756 0.99659 1.05846 0.97824 1.22101 1.03210 1.02783 0.95209 1.24960 0.92735 1.02409 0.92244 1.84029 1.49556 1.55567 1.19597 0.92408 0.92542 0.91880 0.92158 0.92484 0.92901 0.91027 0.92353 0.92185 0.92524 0.86505 0.86003 0.90696 0.83555 0.80158 0.73776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 71.98 0.70 -1.37 16 2 C -0.12 -2.06 5.40 30.60 0.17 -1.90 16 3 C -0.09 -1.63 2.39 -10.79 -0.03 -1.66 16 4 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.15 -2.54 8.70 71.98 0.63 -1.91 16 6 C -0.10 -2.51 3.97 30.60 0.12 -2.39 16 7 C -0.11 -3.33 5.57 29.85 0.17 -3.17 16 8 C 0.44 18.68 7.85 71.24 0.56 19.23 16 9 O -0.55 -26.08 15.20 21.95 0.33 -25.75 16 10 O -0.37 -18.33 9.84 -48.94 -0.48 -18.81 16 11 C 0.26 13.80 1.96 29.10 0.06 13.86 16 12 H 0.07 3.67 4.56 -2.39 -0.01 3.66 16 13 C -0.53 -31.12 9.23 25.60 0.24 -30.88 16 14 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 15 C 0.05 2.91 5.47 84.65 0.46 3.38 16 16 N -0.90 -53.33 13.96 21.45 0.30 -53.03 16 17 Si 0.93 44.14 26.90 68.60 1.85 45.99 16 18 H -0.25 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -12.97 6.91 99.48 0.69 -12.28 16 21 C -0.02 -0.89 6.17 24.83 0.15 -0.73 16 22 C -0.23 -9.85 10.81 22.19 0.24 -9.61 16 23 C -0.21 -7.19 10.91 22.19 0.24 -6.94 16 24 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 25 O -0.19 -8.48 10.64 0.18 0.00 -8.47 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.79 6.56 -2.39 -0.02 0.77 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.98 6.56 -2.39 -0.02 0.96 16 33 H 0.06 0.98 6.56 -2.39 -0.02 0.96 16 34 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 35 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.12 3.08 6.56 -2.39 -0.02 3.07 16 38 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.15 5.88 8.06 -2.91 -0.02 5.85 16 40 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.25 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -72.04 342.41 7.50 -64.54 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.99 Total: 20.70 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.51 Total: -25.17 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.30 Total: -53.03 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.15 Total: -53.03 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.85 Total: 45.99 kcal Total: -72.04 7.50 -64.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.633 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds