Wall clock time and date at job start Tue Mar 31 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46819 * 2 1 4 4 H 1.08990 * 109.47144 * 305.00215 * 3 2 1 5 5 C 1.53005 * 109.46801 * 65.00205 * 3 2 1 6 6 C 1.52996 * 109.46824 * 185.00071 * 3 2 1 7 7 C 1.52998 * 109.46929 * 175.00282 * 6 3 2 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 6 3 9 9 O 1.20830 * 119.99594 * 359.97438 * 8 7 6 10 10 O 1.34222 * 120.00024 * 179.72254 * 8 7 6 11 11 C 1.45201 * 116.99867 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47165 * 329.99551 * 11 10 8 13 13 C 1.50697 * 109.47362 * 89.99802 * 11 10 8 14 14 H 1.07996 * 120.00602 * 239.99740 * 13 11 10 15 15 C 1.37883 * 119.99771 * 60.00375 * 13 11 10 16 16 N 1.31521 * 119.99744 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00079 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47414 * 89.99459 * 17 15 13 19 19 H 1.48499 * 109.47218 * 209.99792 * 17 15 13 20 20 H 1.48507 * 109.47283 * 329.99823 * 17 15 13 21 21 C 1.50707 * 109.47123 * 210.00308 * 11 10 8 22 22 C 1.34510 * 125.78890 * 145.00412 * 21 11 10 23 23 C 1.41384 * 106.83979 * 179.97438 * 22 21 11 24 24 C 1.34514 * 106.84160 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.78785 * 324.68928 * 21 11 10 26 26 H 1.08999 * 109.47536 * 299.99849 * 1 2 3 27 27 H 1.08998 * 109.47340 * 59.99846 * 1 2 3 28 28 H 1.09003 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47057 * 240.00133 * 2 1 3 30 30 H 1.08998 * 109.47340 * 120.00154 * 2 1 3 31 31 H 1.09002 * 109.47134 * 299.99791 * 5 3 2 32 32 H 1.08996 * 109.46947 * 59.99756 * 5 3 2 33 33 H 1.09002 * 109.46555 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47441 * 55.00371 * 6 3 2 35 35 H 1.09002 * 109.47087 * 294.99817 * 6 3 2 36 36 H 1.09001 * 109.47671 * 60.00109 * 7 6 3 37 37 H 1.08998 * 109.47454 * 300.00107 * 7 6 3 38 38 H 0.96996 * 119.99493 * 180.02562 * 16 15 13 39 39 H 1.08003 * 126.58095 * 0.02562 * 22 21 11 40 40 H 1.08000 * 126.58161 * 179.97438 * 23 22 21 41 41 H 1.07993 * 125.79430 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1257 7 6 4.0643 2.8851 -0.2511 8 6 5.5663 2.8870 -0.3743 9 8 6.1748 1.8432 -0.3626 10 8 6.2277 4.0480 -0.5022 11 6 7.6733 3.9739 -0.6165 12 1 8.0364 3.1007 -0.0746 13 6 8.0571 3.8589 -2.0693 14 1 8.6093 2.9978 -2.4155 15 6 7.7033 4.8533 -2.9566 16 7 7.0305 5.9018 -2.5351 17 14 8.1784 4.7105 -4.7574 18 1 7.1008 4.0080 -5.4995 19 1 8.3687 6.0680 -5.3283 20 1 9.4434 3.9417 -4.8763 21 6 8.2880 5.2194 -0.0316 22 6 9.4539 5.2822 0.6363 23 6 9.6439 6.6346 1.0023 24 6 8.5831 7.3174 0.5356 25 8 7.7674 6.4559 -0.0939 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 0.5488 2.1252 1.3970 32 1 2.0698 1.5875 2.1492 33 1 1.9988 3.1541 1.3076 34 1 3.8570 0.8802 -1.0114 35 1 4.0029 0.9837 0.7596 36 1 3.7722 3.4494 0.6345 37 1 3.6262 3.3459 -1.1364 38 1 6.7813 6.6011 -3.1593 39 1 10.1178 4.4579 0.8511 40 1 10.4804 7.0414 1.5512 41 1 8.4174 8.3789 0.6450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:54 Heat of formation + Delta-G solvation = -112.749092 kcal Electronic energy + Delta-G solvation = -22150.964616 eV Core-core repulsion = 18803.426966 eV Total energy + Delta-G solvation = -3347.537650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.04421 -41.04466 -38.29770 -37.16647 -34.93645 -33.57952 -33.27416 -31.66416 -29.71628 -28.39846 -26.93793 -25.15896 -23.60194 -22.32991 -21.28219 -21.12223 -20.72565 -18.99516 -18.27783 -18.02082 -17.13364 -16.80722 -16.59289 -16.25621 -15.99414 -15.35131 -15.05764 -14.50311 -14.41444 -14.32855 -13.63206 -13.53070 -13.42111 -13.35299 -13.06090 -12.95040 -12.85003 -12.75143 -12.63312 -12.47085 -12.21104 -11.86936 -11.83961 -11.47783 -11.38705 -11.29519 -11.23768 -10.96577 -10.78618 -10.49771 -9.08431 -8.23342 -6.54214 1.18232 1.35884 1.37719 1.46806 1.55452 1.91373 2.26983 2.32463 2.59096 3.07458 3.81758 3.83694 3.96422 4.14837 4.26578 4.33398 4.39664 4.44248 4.48263 4.56190 4.60610 4.71471 4.76072 4.78909 4.91952 5.08009 5.12298 5.13270 5.20924 5.23154 5.25909 5.27797 5.34581 5.43229 5.56095 5.58647 5.60662 5.79211 5.89642 6.02881 6.50410 6.71457 7.14251 7.26907 8.74581 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.004630 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.187890 B = 6046.497381 C = 7001.786867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.151 4.151 6 C -0.094 4.094 7 C -0.106 4.106 8 C 0.445 3.555 9 O -0.560 6.560 10 O -0.352 6.352 11 C 0.277 3.723 12 H 0.055 0.945 13 C -0.579 4.579 14 H 0.059 0.941 15 C 0.043 3.957 16 N -0.846 5.846 17 Si 0.956 3.044 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.041 3.959 22 C -0.266 4.266 23 C -0.219 4.219 24 C -0.082 4.082 25 O -0.145 6.145 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.269 0.731 39 H 0.144 0.856 40 H 0.171 0.829 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -2.296 6.113 11.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.132 4.132 7 C -0.143 4.143 8 C 0.291 3.709 9 O -0.453 6.453 10 O -0.267 6.267 11 C 0.225 3.775 12 H 0.073 0.927 13 C -0.615 4.615 14 H 0.077 0.923 15 C -0.166 4.166 16 N -0.479 5.479 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.194 1.194 21 C -0.012 4.012 22 C -0.285 4.285 23 C -0.238 4.238 24 C -0.150 4.150 25 O -0.038 6.038 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.742 -2.295 5.940 11.638 hybrid contribution 1.006 -0.150 -1.002 1.428 sum -8.736 -2.445 4.938 10.329 Atomic orbital electron populations 1.21800 0.94696 1.01961 1.02254 1.21559 0.96779 0.95546 1.01876 1.21152 0.92727 0.97207 0.99431 0.90601 1.21962 1.02071 1.00443 0.96376 1.21415 0.96272 0.93272 1.02243 1.21528 0.85512 1.01120 1.06140 1.24469 0.93250 0.81864 0.71359 1.90505 1.71446 1.34326 1.49064 1.86700 1.25177 1.34273 1.80577 1.18598 0.75428 0.88015 0.95505 0.92670 1.21391 1.39828 1.07489 0.92794 0.92323 1.25793 0.93543 0.94095 1.03129 1.70161 1.33701 1.07936 1.36073 0.85600 0.78978 0.78020 0.79420 1.19694 1.19672 1.19431 1.22741 0.95690 0.85068 0.97668 1.21551 0.99325 0.99324 1.08317 1.21906 1.01751 0.92701 1.07430 1.24734 0.92718 0.97340 1.00191 1.84351 1.44738 1.16378 1.58368 0.91834 0.92672 0.92327 0.92572 0.91996 0.91045 0.92709 0.92501 0.92792 0.92029 0.86406 0.87623 0.92166 0.83812 0.81194 0.75791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.67 71.98 0.70 -1.58 16 2 C -0.12 -2.27 5.40 30.60 0.17 -2.10 16 3 C -0.09 -1.83 2.39 -10.79 -0.03 -1.85 16 4 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.15 -2.79 8.70 71.98 0.63 -2.16 16 6 C -0.09 -2.68 3.97 30.59 0.12 -2.55 16 7 C -0.11 -3.46 5.57 29.85 0.17 -3.29 16 8 C 0.44 20.44 7.92 71.24 0.56 21.00 16 9 O -0.56 -28.29 15.20 21.95 0.33 -27.96 16 10 O -0.35 -18.51 9.25 -48.71 -0.45 -18.96 16 11 C 0.28 15.15 2.57 29.10 0.07 15.23 16 12 H 0.06 3.04 7.16 -2.39 -0.02 3.02 16 13 C -0.58 -33.35 8.91 25.60 0.23 -33.12 16 14 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 15 C 0.04 2.36 5.24 84.66 0.44 2.81 16 16 N -0.85 -47.26 10.62 21.45 0.23 -47.03 16 17 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C 0.04 2.11 5.59 24.83 0.14 2.25 16 22 C -0.27 -11.86 10.81 22.19 0.24 -11.62 16 23 C -0.22 -8.23 10.91 22.19 0.24 -7.99 16 24 C -0.08 -3.19 12.09 66.97 0.81 -2.38 16 25 O -0.15 -7.27 8.87 0.85 0.01 -7.26 16 26 H 0.06 0.87 6.56 -2.39 -0.02 0.86 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.09 6.57 -2.39 -0.02 1.07 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.07 6.56 -2.39 -0.02 1.06 16 34 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 36 H 0.12 3.32 6.56 -2.39 -0.02 3.30 16 37 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.14 5.87 8.06 -2.91 -0.02 5.84 16 40 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.23 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -68.35 341.45 7.64 -60.71 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.00 Total: 22.54 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.49 Total: -27.37 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.23 Total: -47.03 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.11 Total: -54.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.35 7.64 -60.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.040 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds