Wall clock time and date at job start Tue Mar 31 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48504 * 109.46967 * 269.99416 * 3 2 1 5 5 H 1.48496 * 109.47571 * 29.99725 * 3 2 1 6 6 H 1.48503 * 109.46964 * 149.99875 * 3 2 1 7 7 C 1.37875 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00202 * 186.61133 * 7 2 1 9 9 C 1.50699 * 120.00048 * 6.61759 * 7 2 1 10 10 C 1.52995 * 113.00203 * 65.39329 * 9 7 2 11 11 O 1.45203 * 109.47179 * 53.51941 * 10 9 7 12 12 C 1.34231 * 117.00062 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99896 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00193 * 180.02562 * 12 11 10 15 15 H 1.09007 * 115.54878 * 34.42096 * 14 12 11 16 16 C 1.52994 * 117.49992 * 248.74726 * 14 12 11 17 17 C 1.52999 * 117.50090 * 180.08452 * 14 12 11 18 18 H 1.09002 * 117.49804 * 0.02562 * 17 14 12 19 19 C 1.52997 * 117.49908 * 215.00248 * 17 14 12 20 20 C 1.53778 * 113.61216 * 157.49749 * 19 17 14 21 21 C 1.53785 * 87.08332 * 220.02151 * 20 19 17 22 22 C 1.53778 * 87.07684 * 25.43414 * 21 20 19 23 23 C 1.54036 * 113.92703 * 197.32468 * 9 7 2 24 24 O 1.44181 * 85.51877 * 91.65787 * 23 9 7 25 25 C 1.44176 * 93.33924 * 24.19214 * 24 23 9 26 26 H 0.97002 * 120.00151 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46741 * 293.52185 * 10 9 7 28 28 H 1.08998 * 109.47260 * 173.52347 * 10 9 7 29 29 H 1.09001 * 117.50175 * 359.97438 * 16 14 12 30 30 H 1.09009 * 117.49868 * 145.01742 * 16 14 12 31 31 H 1.08998 * 112.85355 * 288.80518 * 19 17 14 32 32 H 1.09002 * 113.61888 * 334.57224 * 20 19 17 33 33 H 1.09001 * 113.61538 * 105.47273 * 20 19 17 34 34 H 1.09001 * 113.60953 * 270.88312 * 21 20 19 35 35 H 1.09001 * 113.69153 * 139.99495 * 21 20 19 36 36 H 1.09008 * 113.60974 * 220.02224 * 22 21 20 37 37 H 1.08995 * 113.61443 * 89.12187 * 22 21 20 38 38 H 1.08997 * 113.86925 * 205.80506 * 23 9 7 39 39 H 1.09000 * 113.86239 * 337.51238 * 23 9 7 40 40 H 1.08993 * 113.86930 * 221.66046 * 25 24 23 41 41 H 1.09000 * 113.98291 * 89.96536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1971 0.1082 9 6 1.2585 -2.4948 -0.1493 10 6 0.5843 -2.6435 -1.5146 11 8 1.5659 -2.4367 -2.5643 12 6 1.1328 -2.5329 -3.8312 13 8 -0.0282 -2.7812 -4.0555 14 6 2.0946 -2.3312 -4.9737 15 1 3.1118 -2.6821 -4.7994 16 6 1.9170 -1.0784 -5.8338 17 6 1.5394 -2.4519 -6.3943 18 1 0.4783 -2.6767 -6.5025 19 6 2.4544 -3.0557 -7.4615 20 6 1.6956 -3.6386 -8.6653 21 6 2.7076 -4.7963 -8.6426 22 6 2.9018 -4.4931 -7.1476 23 6 2.0676 -3.7323 0.2829 24 8 1.4701 -3.5301 1.5793 25 6 0.3355 -2.8230 1.0394 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2107 -1.9038 -1.6096 28 1 0.1619 -3.6444 -1.6041 29 1 1.1043 -0.4002 -5.5736 30 1 2.8175 -0.6052 -6.2257 31 1 3.2747 -2.3939 -7.7395 32 1 0.6760 -3.9453 -8.4320 33 1 1.7583 -3.0213 -9.5615 34 1 3.5969 -4.6107 -9.2450 35 1 2.2614 -5.7718 -8.8360 36 1 3.9385 -4.5656 -6.8185 37 1 2.2121 -5.0334 -6.4993 38 1 1.7571 -4.6553 -0.2067 39 1 3.1470 -3.5812 0.2664 40 1 0.0410 -1.9507 1.6229 41 1 -0.5053 -3.4665 0.7803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349042870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:06 Heat of formation + Delta-G solvation = -60.138432 kcal Electronic energy + Delta-G solvation = -22226.513113 eV Core-core repulsion = 18881.256833 eV Total energy + Delta-G solvation = -3345.256280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17533 -39.34061 -38.77056 -36.25268 -35.14920 -32.89834 -29.98942 -26.82804 -25.72980 -25.53749 -25.33160 -24.64855 -23.24470 -21.22504 -19.77109 -19.43259 -18.97304 -17.19047 -16.54956 -15.86584 -15.74999 -15.48754 -15.15177 -14.82021 -14.45399 -14.35301 -14.10488 -13.58084 -12.77236 -12.62533 -12.61560 -12.55710 -12.08932 -11.91191 -11.82110 -11.52536 -11.00797 -10.97401 -10.78847 -10.76137 -10.63613 -10.46441 -10.14753 -9.98198 -9.93672 -9.88672 -9.48783 -9.39608 -9.05221 -8.75972 -8.30021 -6.17476 -4.19850 2.66193 3.26175 3.28492 3.32899 3.36410 3.85310 4.33962 4.43956 4.55376 4.57650 4.74036 4.89359 4.94745 4.97818 5.10645 5.18248 5.33502 5.43701 5.55590 5.63746 5.65905 5.73456 5.76331 5.83875 5.93537 6.05565 6.06810 6.08136 6.18851 6.21131 6.30997 6.39058 6.39679 6.56542 6.97565 7.13684 7.28224 7.35296 7.39795 7.78840 8.18263 8.52093 8.77032 9.43724 10.91081 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.004530 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.321408 B = 6180.212220 C = 6971.479709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.484 4.484 8 H 0.066 0.934 9 C 0.033 3.967 10 C 0.083 3.917 11 O -0.325 6.325 12 C 0.482 3.518 13 O -0.527 6.527 14 C -0.156 4.156 15 H 0.131 0.869 16 C -0.146 4.146 17 C -0.112 4.112 18 H 0.118 0.882 19 C -0.082 4.082 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.136 4.136 23 C 0.028 3.972 24 O -0.388 6.388 25 C 0.050 3.950 26 H 0.264 0.736 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -5.420 -14.615 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.032 3.968 10 C 0.009 3.991 11 O -0.239 6.239 12 C 0.325 3.675 13 O -0.418 6.418 14 C -0.175 4.175 15 H 0.149 0.851 16 C -0.183 4.183 17 C -0.130 4.130 18 H 0.136 0.864 19 C -0.100 4.100 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.173 4.173 23 C -0.049 4.049 24 O -0.307 6.307 25 C -0.027 4.027 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.870 -5.433 -14.338 15.813 hybrid contribution 0.136 0.954 -0.063 0.965 sum 4.007 -4.479 -14.401 15.604 Atomic orbital electron populations 1.69889 1.05944 1.27193 1.49681 1.24947 0.94925 0.99323 0.94385 0.86478 0.79923 0.82810 0.78194 1.20520 1.21216 1.19675 1.20549 0.93421 0.88309 1.49893 0.91596 1.21113 0.92640 0.94631 0.88419 1.23447 0.91021 0.98729 0.85877 1.86528 1.43300 1.79951 1.14144 1.22480 0.87192 0.73144 0.84653 1.90589 1.19514 1.45725 1.85930 1.21727 1.00229 1.06528 0.89042 0.85116 1.23127 1.03872 0.90459 1.00835 1.22497 1.00542 0.98972 0.91027 0.86407 1.22186 0.97509 0.95880 0.94437 1.22949 0.98767 0.97458 0.97825 1.22818 0.99514 0.98794 0.97050 1.22939 1.01684 0.96143 0.96527 1.24093 0.99245 0.97365 0.84183 1.89490 1.37256 1.77744 1.26228 1.23917 0.88516 0.94304 0.95971 0.92590 0.89775 0.94549 0.88107 0.87549 0.88885 0.89867 0.91535 0.90357 0.91529 0.91435 0.89775 0.92889 0.90374 0.88199 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.31 55.43 0.63 -23.59 16 2 C 0.07 1.77 5.25 -17.82 -0.09 1.68 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.48 -12.88 7.92 -34.44 -0.27 -13.15 16 8 H 0.07 1.76 7.82 -52.48 -0.41 1.35 16 9 C 0.03 0.79 0.62 -154.58 -0.10 0.70 16 10 C 0.08 1.96 4.67 37.15 0.17 2.13 16 11 O -0.32 -7.30 9.82 -39.26 -0.39 -7.69 16 12 C 0.48 9.63 7.74 36.00 0.28 9.91 16 13 O -0.53 -11.62 16.01 -18.75 -0.30 -11.92 16 14 C -0.16 -2.34 5.82 -91.78 -0.53 -2.87 16 15 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 16 C -0.15 -1.89 9.93 -26.70 -0.26 -2.15 16 17 C -0.11 -1.40 5.06 -90.58 -0.46 -1.86 16 18 H 0.12 1.63 7.50 -51.93 -0.39 1.24 16 19 C -0.08 -0.80 3.88 -89.81 -0.35 -1.15 16 20 C -0.13 -1.16 7.63 -25.92 -0.20 -1.35 16 21 C -0.14 -1.17 8.08 -25.92 -0.21 -1.38 16 22 C -0.14 -1.29 7.45 -25.92 -0.19 -1.48 16 23 C 0.03 0.61 8.35 37.61 0.31 0.93 16 24 O -0.39 -9.32 12.40 -35.23 -0.44 -9.75 16 25 C 0.05 1.19 7.91 37.61 0.30 1.49 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.08 2.20 7.21 -51.93 -0.37 1.83 16 28 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 29 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.11 1.11 8.13 -51.92 -0.42 0.69 16 31 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.08 0.76 7.98 -51.93 -0.41 0.35 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.05 1.03 8.03 -51.93 -0.42 0.62 16 39 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 40 H 0.10 2.55 7.36 -51.93 -0.38 2.17 16 41 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -29.36 342.32 -8.54 -37.90 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.58 Total: 2.59 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.61 Total: -8.57 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.63 Total: -23.59 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.12 Total: -29.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.36 -8.54 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349042870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.236 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds