Wall clock time and date at job start Tue Mar 31 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48504 * 109.46967 * 269.99416 * 3 2 1 5 5 H 1.48496 * 109.47571 * 29.99725 * 3 2 1 6 6 H 1.48503 * 109.46964 * 149.99875 * 3 2 1 7 7 C 1.37875 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00202 * 186.61133 * 7 2 1 9 9 C 1.50699 * 120.00048 * 6.61759 * 7 2 1 10 10 C 1.52995 * 113.00203 * 65.39329 * 9 7 2 11 11 O 1.45203 * 109.47179 * 53.51941 * 10 9 7 12 12 C 1.34231 * 117.00062 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99896 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00193 * 180.02562 * 12 11 10 15 15 H 1.09007 * 115.54878 * 34.42096 * 14 12 11 16 16 C 1.52994 * 117.49992 * 248.74726 * 14 12 11 17 17 C 1.52999 * 117.50090 * 180.08452 * 14 12 11 18 18 H 1.09002 * 117.49804 * 0.02562 * 17 14 12 19 19 C 1.52997 * 117.49908 * 215.00248 * 17 14 12 20 20 C 1.53778 * 113.61216 * 157.49749 * 19 17 14 21 21 C 1.53785 * 87.08332 * 220.02151 * 20 19 17 22 22 C 1.53778 * 87.07684 * 25.43414 * 21 20 19 23 23 C 1.54036 * 113.92703 * 197.32468 * 9 7 2 24 24 O 1.44181 * 85.51877 * 91.65787 * 23 9 7 25 25 C 1.44176 * 93.33924 * 24.19214 * 24 23 9 26 26 H 0.97002 * 120.00151 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46741 * 293.52185 * 10 9 7 28 28 H 1.08998 * 109.47260 * 173.52347 * 10 9 7 29 29 H 1.09001 * 117.50175 * 359.97438 * 16 14 12 30 30 H 1.09009 * 117.49868 * 145.01742 * 16 14 12 31 31 H 1.08998 * 112.85355 * 288.80518 * 19 17 14 32 32 H 1.09002 * 113.61888 * 334.57224 * 20 19 17 33 33 H 1.09001 * 113.61538 * 105.47273 * 20 19 17 34 34 H 1.09001 * 113.60953 * 270.88312 * 21 20 19 35 35 H 1.09001 * 113.69153 * 139.99495 * 21 20 19 36 36 H 1.09008 * 113.60974 * 220.02224 * 22 21 20 37 37 H 1.08995 * 113.61443 * 89.12187 * 22 21 20 38 38 H 1.08997 * 113.86925 * 205.80506 * 23 9 7 39 39 H 1.09000 * 113.86239 * 337.51238 * 23 9 7 40 40 H 1.08993 * 113.86930 * 221.66046 * 25 24 23 41 41 H 1.09000 * 113.98291 * 89.96536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1971 0.1082 9 6 1.2585 -2.4948 -0.1493 10 6 0.5843 -2.6435 -1.5146 11 8 1.5659 -2.4367 -2.5643 12 6 1.1328 -2.5329 -3.8312 13 8 -0.0282 -2.7812 -4.0555 14 6 2.0946 -2.3312 -4.9737 15 1 3.1118 -2.6821 -4.7994 16 6 1.9170 -1.0784 -5.8338 17 6 1.5394 -2.4519 -6.3943 18 1 0.4783 -2.6767 -6.5025 19 6 2.4544 -3.0557 -7.4615 20 6 1.6956 -3.6386 -8.6653 21 6 2.7076 -4.7963 -8.6426 22 6 2.9018 -4.4931 -7.1476 23 6 2.0676 -3.7323 0.2829 24 8 1.4701 -3.5301 1.5793 25 6 0.3355 -2.8230 1.0394 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2107 -1.9038 -1.6096 28 1 0.1619 -3.6444 -1.6041 29 1 1.1043 -0.4002 -5.5736 30 1 2.8175 -0.6052 -6.2257 31 1 3.2747 -2.3939 -7.7395 32 1 0.6760 -3.9453 -8.4320 33 1 1.7583 -3.0213 -9.5615 34 1 3.5969 -4.6107 -9.2450 35 1 2.2614 -5.7718 -8.8360 36 1 3.9385 -4.5656 -6.8185 37 1 2.2121 -5.0334 -6.4993 38 1 1.7571 -4.6553 -0.2067 39 1 3.1470 -3.5812 0.2664 40 1 0.0410 -1.9507 1.6229 41 1 -0.5053 -3.4665 0.7803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349042870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:06 Heat of formation + Delta-G solvation = -75.281555 kcal Electronic energy + Delta-G solvation = -22227.169768 eV Core-core repulsion = 18881.256833 eV Total energy + Delta-G solvation = -3345.912935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69176 -40.98222 -39.92424 -37.64456 -36.52588 -34.89493 -31.89837 -28.04754 -27.24457 -27.06796 -26.42975 -26.29768 -24.75832 -22.21467 -21.17914 -20.82235 -20.24972 -18.69993 -18.35188 -17.57899 -17.32458 -16.79890 -16.42475 -16.30780 -16.21106 -16.06334 -15.71339 -14.76727 -14.31486 -14.16250 -13.77700 -13.62397 -13.42705 -13.28506 -13.14502 -12.87854 -12.73056 -12.62277 -12.36705 -11.96332 -11.87164 -11.78809 -11.55441 -11.37676 -11.31207 -11.28689 -10.96645 -10.88348 -10.73113 -10.69633 -10.22022 -8.19681 -6.27777 1.14066 1.41174 1.42677 1.52058 1.80311 2.40476 2.72554 2.99089 3.20968 3.52875 3.60345 3.71603 3.86694 3.95383 4.01223 4.12390 4.18414 4.23056 4.25684 4.43188 4.45916 4.48295 4.56414 4.70672 4.77432 4.87074 4.91929 4.93809 4.99268 5.11935 5.14806 5.14907 5.20975 5.22123 5.40157 5.45309 5.48379 5.67386 5.69849 5.71578 6.21411 6.70570 6.86836 7.38116 8.87571 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.004530 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.321408 B = 6180.212220 C = 6971.479709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.017 3.983 10 C 0.094 3.906 11 O -0.337 6.337 12 C 0.475 3.525 13 O -0.555 6.555 14 C -0.172 4.172 15 H 0.151 0.849 16 C -0.138 4.138 17 C -0.095 4.095 18 H 0.098 0.902 19 C -0.079 4.079 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.141 4.141 23 C 0.038 3.962 24 O -0.402 6.402 25 C 0.054 3.946 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -5.546 -16.397 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.016 3.984 10 C 0.020 3.980 11 O -0.252 6.252 12 C 0.321 3.679 13 O -0.448 6.448 14 C -0.191 4.191 15 H 0.169 0.831 16 C -0.175 4.175 17 C -0.113 4.113 18 H 0.117 0.883 19 C -0.097 4.097 20 C -0.171 4.171 21 C -0.174 4.174 22 C -0.178 4.178 23 C -0.039 4.039 24 O -0.321 6.321 25 C -0.023 4.023 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.158 0.842 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.670 -5.569 -16.125 17.977 hybrid contribution -0.458 0.962 0.470 1.164 sum 5.212 -4.607 -15.655 17.131 Atomic orbital electron populations 1.69993 1.06992 1.27644 1.50330 1.25615 0.95636 1.02132 0.94203 0.85625 0.78925 0.79362 0.78247 1.20095 1.21027 1.19147 1.20774 0.93288 0.89686 1.49958 0.92291 1.21190 0.93362 0.95069 0.88783 1.23127 0.90362 0.98172 0.86311 1.86530 1.43107 1.80443 1.15114 1.23492 0.87851 0.71879 0.84722 1.90565 1.21090 1.47028 1.86082 1.21872 1.00042 1.09099 0.88110 0.83087 1.23297 1.04704 0.90028 0.99455 1.22550 1.00150 0.98581 0.90066 0.88350 1.22294 0.97606 0.96093 0.93706 1.22956 0.98353 0.97906 0.97878 1.22813 0.99864 0.98658 0.96036 1.22945 1.01714 0.95822 0.97367 1.24189 0.99445 0.97346 0.82875 1.89463 1.37463 1.77752 1.27438 1.23827 0.89167 0.94004 0.95339 0.92763 0.93124 0.93364 0.89823 0.84184 0.86813 0.90922 0.90138 0.88711 0.91344 0.90557 0.91578 0.90091 0.89579 0.90595 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.57 11.31 21.45 0.24 -50.33 16 2 C 0.02 1.29 5.25 84.65 0.44 1.74 16 3 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.50 -26.70 7.92 25.60 0.20 -26.50 16 8 H 0.06 3.15 7.82 -2.90 -0.02 3.13 16 9 C 0.02 0.81 0.62 -52.23 -0.03 0.77 16 10 C 0.09 4.51 4.67 71.98 0.34 4.85 16 11 O -0.34 -15.24 9.82 -51.43 -0.51 -15.74 16 12 C 0.47 19.11 7.74 71.24 0.55 19.66 16 13 O -0.56 -25.09 16.01 21.95 0.35 -24.73 16 14 C -0.17 -4.96 5.82 -11.54 -0.07 -5.03 16 15 H 0.15 3.70 8.14 -2.38 -0.02 3.68 16 16 C -0.14 -3.32 9.93 30.62 0.30 -3.02 16 17 C -0.10 -2.24 5.06 -10.77 -0.05 -2.30 16 18 H 0.10 2.73 7.50 -2.39 -0.02 2.71 16 19 C -0.08 -1.32 3.88 -10.27 -0.04 -1.36 16 20 C -0.13 -2.02 7.63 31.12 0.24 -1.78 16 21 C -0.14 -1.85 8.08 31.12 0.25 -1.60 16 22 C -0.14 -2.38 7.45 31.12 0.23 -2.15 16 23 C 0.04 1.61 8.35 72.27 0.60 2.21 16 24 O -0.40 -19.01 12.40 -148.98 -1.85 -20.86 16 25 C 0.05 2.57 7.91 72.28 0.57 3.14 16 26 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.05 2.74 7.21 -2.39 -0.02 2.72 16 28 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.14 2.43 8.13 -2.38 -0.02 2.41 16 31 H 0.11 1.51 8.08 -2.39 -0.02 1.49 16 32 H 0.07 1.25 7.98 -2.39 -0.02 1.23 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 38 H 0.08 2.98 8.03 -2.39 -0.02 2.96 16 39 H 0.09 3.49 8.09 -2.39 -0.02 3.47 16 40 H 0.08 3.97 7.36 -2.39 -0.02 3.96 16 41 H 0.07 2.90 8.10 -2.39 -0.02 2.88 16 Total: -1.00 -63.61 342.32 4.81 -58.79 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.00 Total: 19.35 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.54 Total: -11.36 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.24 Total: -50.33 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -2.00 Total: -61.33 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.61 4.81 -58.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349042870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.487 kcal (2) G-P(sol) polarization free energy of solvation -63.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds