Wall clock time and date at job start Tue Mar 31 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99740 * 2 1 4 4 H 1.48507 * 109.46599 * 239.99702 * 3 2 1 5 5 H 1.48497 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47355 * 119.99739 * 3 2 1 7 7 C 1.37873 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00420 * 173.72830 * 7 2 1 9 9 C 1.50704 * 119.99654 * 353.99765 * 7 2 1 10 10 C 1.53000 * 113.00197 * 292.08455 * 9 7 2 11 11 O 1.45199 * 109.47353 * 298.16989 * 10 9 7 12 12 C 1.34232 * 117.00011 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99576 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99928 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.61547 * 59.63500 * 14 12 11 16 16 C 1.53300 * 109.61409 * 299.09922 * 14 12 11 17 17 C 1.52882 * 108.58090 * 165.82780 * 16 14 12 18 18 C 1.52712 * 110.15050 * 54.51769 * 17 16 14 19 19 H 1.09007 * 114.91121 * 127.84322 * 18 17 16 20 20 C 1.53650 * 116.03270 * 269.79894 * 18 17 16 21 21 C 1.52064 * 120.52532 * 338.53522 * 18 17 16 22 22 H 1.09003 * 115.31282 * 148.98806 * 21 18 17 23 23 C 1.52074 * 120.02222 * 5.28138 * 21 18 17 24 24 C 1.54032 * 113.81425 * 160.09979 * 9 7 2 25 25 O 1.44181 * 85.51841 * 223.19813 * 24 9 7 26 26 C 1.44178 * 93.33640 * 24.19344 * 25 24 9 27 27 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46545 * 58.17197 * 10 9 7 29 29 H 1.08999 * 109.46981 * 178.16355 * 10 9 7 30 30 H 1.09002 * 109.62222 * 285.55038 * 16 14 12 31 31 H 1.08995 * 109.62332 * 46.09780 * 16 14 12 32 32 H 1.09001 * 109.35355 * 294.31407 * 17 16 14 33 33 H 1.09001 * 109.35869 * 174.72621 * 17 16 14 34 34 H 1.08998 * 117.53810 * 4.30900 * 20 18 17 35 35 H 1.09007 * 117.59545 * 219.03965 * 20 18 17 36 36 H 1.08998 * 109.26661 * 218.03735 * 23 21 18 37 37 H 1.08996 * 109.26518 * 98.57221 * 23 21 18 38 38 H 1.09003 * 113.86644 * 337.34166 * 24 9 7 39 39 H 1.09001 * 113.86594 * 109.04803 * 24 9 7 40 40 H 1.09003 * 113.86067 * 221.66173 * 26 25 24 41 41 H 1.08998 * 113.98429 * 89.97187 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1968 -0.1016 9 6 1.2573 -2.4955 0.1376 10 6 0.6217 -2.6775 1.5174 11 8 1.6616 -2.6981 2.5305 12 6 1.2682 -2.8522 3.8046 13 8 0.0938 -2.9656 4.0646 14 6 2.2914 -2.8838 4.9105 15 1 2.8531 -1.9497 4.9161 16 6 3.2476 -4.0623 4.6935 17 6 4.4654 -3.8745 5.5983 18 6 4.0209 -3.6941 7.0481 19 1 4.5055 -4.3591 7.7631 20 6 3.7605 -2.2485 7.4987 21 6 2.6075 -3.2355 7.3712 22 1 2.1978 -3.6129 8.3081 23 6 1.5881 -3.0680 6.2552 24 6 2.0498 -3.7222 -0.3518 25 8 0.8129 -4.1342 -0.9676 26 6 0.2991 -2.7886 -1.0323 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0613 -1.8512 1.7145 29 1 0.0711 -3.6179 1.5425 30 1 2.7431 -4.9945 4.9477 31 1 3.5663 -4.0879 3.6515 32 1 5.0207 -2.9927 5.2784 33 1 5.1092 -4.7509 5.5242 34 1 3.8382 -1.4642 6.7458 35 1 4.0753 -1.9685 8.5041 36 1 0.9702 -2.1939 6.4607 37 1 0.9542 -3.9536 6.2113 38 1 2.8387 -3.4820 -1.0647 39 1 2.3838 -4.3803 0.4504 40 1 -0.7556 -2.7063 -0.7696 41 1 0.5520 -2.2615 -1.9522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349055920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:18 Heat of formation + Delta-G solvation = -91.838600 kcal Electronic energy + Delta-G solvation = -22781.007806 eV Core-core repulsion = 19434.376903 eV Total energy + Delta-G solvation = -3346.630903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39945 -39.40778 -38.65364 -35.67744 -33.33122 -32.94686 -30.87979 -29.77541 -26.19550 -25.39853 -24.86842 -24.08805 -23.17084 -21.48636 -20.16435 -18.67561 -18.44848 -17.16647 -16.94695 -16.14795 -15.62264 -15.21647 -14.93981 -14.50895 -14.41424 -14.17525 -14.02141 -13.77724 -13.69333 -12.74099 -12.42765 -12.28464 -12.05907 -11.84395 -11.60387 -11.35301 -11.23762 -11.03724 -11.01615 -10.94222 -10.64797 -10.58227 -10.48434 -9.86476 -9.81720 -9.79221 -9.62868 -9.20414 -8.87175 -8.65225 -8.42272 -6.18614 -4.22941 2.80532 3.24334 3.30170 3.31792 3.34402 3.65276 4.31825 4.48741 4.62801 4.75597 4.88941 4.92446 4.99278 5.08637 5.12240 5.29832 5.41120 5.45428 5.54772 5.67455 5.77990 5.87953 5.95085 6.00597 6.03878 6.09179 6.11863 6.16323 6.26915 6.28717 6.30687 6.35946 6.50936 6.73459 6.79061 7.12549 7.24116 7.38625 7.41926 7.76732 8.13241 8.47563 8.74023 9.42233 10.89582 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.005332 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.276225 B = 5249.580672 C = 5937.912200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.021 3.979 10 C 0.103 3.897 11 O -0.335 6.335 12 C 0.458 3.542 13 O -0.522 6.522 14 C -0.081 4.081 15 H 0.106 0.894 16 C -0.111 4.111 17 C -0.088 4.088 18 C -0.151 4.151 19 H 0.101 0.899 20 C -0.185 4.185 21 C -0.136 4.136 22 H 0.101 0.899 23 C -0.073 4.073 24 C 0.037 3.963 25 O -0.413 6.413 26 C 0.069 3.931 27 H 0.265 0.735 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 -5.502 11.556 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.020 3.980 10 C 0.029 3.971 11 O -0.250 6.250 12 C 0.301 3.699 13 O -0.412 6.412 14 C -0.100 4.100 15 H 0.124 0.876 16 C -0.148 4.148 17 C -0.125 4.125 18 C -0.169 4.169 19 H 0.119 0.881 20 C -0.222 4.222 21 C -0.154 4.154 22 H 0.119 0.881 23 C -0.110 4.110 24 C -0.040 4.040 25 O -0.333 6.333 26 C -0.008 4.008 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.386 -5.645 11.495 14.310 hybrid contribution 0.274 1.281 0.136 1.317 sum 6.661 -4.364 11.631 14.096 Atomic orbital electron populations 1.69890 1.05939 1.27330 1.49421 1.24972 0.94883 0.99238 0.94394 0.86622 0.79672 0.82787 0.78792 1.20088 1.21252 1.20105 1.20856 0.93583 0.89440 1.50873 0.91770 1.20898 0.92963 0.94510 0.89598 1.22961 0.88057 1.00285 0.85768 1.86452 1.41914 1.81169 1.15457 1.23462 0.89070 0.72753 0.84594 1.90603 1.19797 1.46323 1.84525 1.21037 0.95419 1.02083 0.91507 0.87646 1.21568 0.95399 0.96780 1.01063 1.21062 0.97126 1.02425 0.91904 1.22272 0.99108 0.97607 0.97922 0.88108 1.23175 1.03437 0.93001 1.02555 1.21815 0.89844 1.03703 1.00035 0.88108 1.20707 0.96349 1.03562 0.90424 1.24008 0.88426 0.96016 0.95547 1.89445 1.31447 1.28351 1.84070 1.23821 0.98741 0.79504 0.98710 0.92488 0.89744 0.93949 0.91182 0.89901 0.91137 0.91135 0.88502 0.89073 0.90694 0.90390 0.91140 0.91387 0.90785 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.02 11.74 55.43 0.65 -23.37 16 2 C 0.07 1.78 5.32 -17.82 -0.09 1.68 16 3 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.16 8.16 -34.44 -0.28 -13.44 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.02 0.50 0.57 -154.58 -0.09 0.41 16 10 C 0.10 2.45 4.62 37.16 0.17 2.62 16 11 O -0.34 -7.31 9.72 -39.26 -0.38 -7.69 16 12 C 0.46 8.93 7.25 36.00 0.26 9.19 16 13 O -0.52 -11.45 15.66 -18.75 -0.29 -11.75 16 14 C -0.08 -1.18 2.38 -91.69 -0.22 -1.40 16 15 H 0.11 1.47 7.12 -51.93 -0.37 1.10 16 16 C -0.11 -1.37 5.25 -26.64 -0.14 -1.51 16 17 C -0.09 -0.88 5.84 -26.94 -0.16 -1.04 16 18 C -0.15 -1.45 6.19 -90.91 -0.56 -2.01 16 19 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.18 -1.79 9.66 -26.75 -0.26 -2.05 16 21 C -0.14 -1.41 6.00 -91.92 -0.55 -1.96 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 23 C -0.07 -0.95 4.59 -27.27 -0.13 -1.07 16 24 C 0.04 0.79 8.34 37.61 0.31 1.11 16 25 O -0.41 -9.53 12.37 -35.23 -0.44 -9.96 16 26 C 0.07 1.63 7.52 37.61 0.28 1.91 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.08 2.24 7.24 -51.93 -0.38 1.86 16 29 H 0.04 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.07 0.84 8.04 -51.93 -0.42 0.43 16 31 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 32 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.00 7.27 -51.93 -0.38 0.62 16 35 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 38 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 39 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.07 1.75 8.10 -51.93 -0.42 1.33 16 41 H 0.08 1.81 8.09 -51.93 -0.42 1.38 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -28.55 332.83 -8.45 -37.00 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.54 Total: 2.86 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.45 Total: -7.56 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.65 Total: -23.37 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.11 Total: -29.40 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.55 -8.45 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349055920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.840 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds