Wall clock time and date at job start Tue Mar 31 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99740 * 2 1 4 4 H 1.48507 * 109.46599 * 239.99702 * 3 2 1 5 5 H 1.48497 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47355 * 119.99739 * 3 2 1 7 7 C 1.37873 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00420 * 173.72830 * 7 2 1 9 9 C 1.50704 * 119.99654 * 353.99765 * 7 2 1 10 10 C 1.53000 * 113.00197 * 292.08455 * 9 7 2 11 11 O 1.45199 * 109.47353 * 298.16989 * 10 9 7 12 12 C 1.34232 * 117.00011 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99576 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99928 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.61547 * 59.63500 * 14 12 11 16 16 C 1.53300 * 109.61409 * 299.09922 * 14 12 11 17 17 C 1.52882 * 108.58090 * 165.82780 * 16 14 12 18 18 C 1.52712 * 110.15050 * 54.51769 * 17 16 14 19 19 H 1.09007 * 114.91121 * 127.84322 * 18 17 16 20 20 C 1.53650 * 116.03270 * 269.79894 * 18 17 16 21 21 C 1.52064 * 120.52532 * 338.53522 * 18 17 16 22 22 H 1.09003 * 115.31282 * 148.98806 * 21 18 17 23 23 C 1.52074 * 120.02222 * 5.28138 * 21 18 17 24 24 C 1.54032 * 113.81425 * 160.09979 * 9 7 2 25 25 O 1.44181 * 85.51841 * 223.19813 * 24 9 7 26 26 C 1.44178 * 93.33640 * 24.19344 * 25 24 9 27 27 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46545 * 58.17197 * 10 9 7 29 29 H 1.08999 * 109.46981 * 178.16355 * 10 9 7 30 30 H 1.09002 * 109.62222 * 285.55038 * 16 14 12 31 31 H 1.08995 * 109.62332 * 46.09780 * 16 14 12 32 32 H 1.09001 * 109.35355 * 294.31407 * 17 16 14 33 33 H 1.09001 * 109.35869 * 174.72621 * 17 16 14 34 34 H 1.08998 * 117.53810 * 4.30900 * 20 18 17 35 35 H 1.09007 * 117.59545 * 219.03965 * 20 18 17 36 36 H 1.08998 * 109.26661 * 218.03735 * 23 21 18 37 37 H 1.08996 * 109.26518 * 98.57221 * 23 21 18 38 38 H 1.09003 * 113.86644 * 337.34166 * 24 9 7 39 39 H 1.09001 * 113.86594 * 109.04803 * 24 9 7 40 40 H 1.09003 * 113.86067 * 221.66173 * 26 25 24 41 41 H 1.08998 * 113.98429 * 89.97187 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1968 -0.1016 9 6 1.2573 -2.4955 0.1376 10 6 0.6217 -2.6775 1.5174 11 8 1.6616 -2.6981 2.5305 12 6 1.2682 -2.8522 3.8046 13 8 0.0938 -2.9656 4.0646 14 6 2.2914 -2.8838 4.9105 15 1 2.8531 -1.9497 4.9161 16 6 3.2476 -4.0623 4.6935 17 6 4.4654 -3.8745 5.5983 18 6 4.0209 -3.6941 7.0481 19 1 4.5055 -4.3591 7.7631 20 6 3.7605 -2.2485 7.4987 21 6 2.6075 -3.2355 7.3712 22 1 2.1978 -3.6129 8.3081 23 6 1.5881 -3.0680 6.2552 24 6 2.0498 -3.7222 -0.3518 25 8 0.8129 -4.1342 -0.9676 26 6 0.2991 -2.7886 -1.0323 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0613 -1.8512 1.7145 29 1 0.0711 -3.6179 1.5425 30 1 2.7431 -4.9945 4.9477 31 1 3.5663 -4.0879 3.6515 32 1 5.0207 -2.9927 5.2784 33 1 5.1092 -4.7509 5.5242 34 1 3.8382 -1.4642 6.7458 35 1 4.0753 -1.9685 8.5041 36 1 0.9702 -2.1939 6.4607 37 1 0.9542 -3.9536 6.2113 38 1 2.8387 -3.4820 -1.0647 39 1 2.3838 -4.3803 0.4504 40 1 -0.7556 -2.7063 -0.7696 41 1 0.5520 -2.2615 -1.9522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349055920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:17 Heat of formation + Delta-G solvation = -106.387088 kcal Electronic energy + Delta-G solvation = -22781.638676 eV Core-core repulsion = 19434.376903 eV Total energy + Delta-G solvation = -3347.261773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86227 -41.05963 -39.94027 -37.39682 -34.97680 -34.31581 -31.85268 -31.64881 -27.81157 -27.20966 -26.49311 -25.72398 -24.23066 -22.43010 -21.46204 -20.53675 -19.48458 -18.81435 -18.56400 -17.63594 -17.36967 -16.86436 -16.64901 -16.08101 -15.93406 -15.64010 -15.39661 -14.97940 -14.63551 -14.13749 -14.09901 -13.77855 -13.42195 -13.20430 -13.06905 -12.96812 -12.84736 -12.54200 -12.50529 -12.33771 -12.12275 -11.98609 -11.69449 -11.56745 -11.22929 -11.07775 -10.79903 -10.64264 -10.57033 -10.56075 -10.33619 -8.18225 -6.27994 1.22003 1.42678 1.44434 1.51021 1.79211 2.40953 2.85947 3.06487 3.13011 3.49695 3.65763 3.72789 3.95790 4.03193 4.05399 4.14445 4.20277 4.25502 4.39521 4.47258 4.55255 4.59143 4.63066 4.67983 4.75119 4.83627 4.92016 4.93453 5.01222 5.11802 5.14802 5.24917 5.26451 5.28497 5.35681 5.45007 5.45753 5.49923 5.68263 5.73734 6.16948 6.72026 6.81466 7.39604 8.88855 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.005332 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.276225 B = 5249.580672 C = 5937.912200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.006 3.994 10 C 0.115 3.885 11 O -0.341 6.341 12 C 0.452 3.548 13 O -0.552 6.552 14 C -0.074 4.074 15 H 0.113 0.887 16 C -0.107 4.107 17 C -0.085 4.085 18 C -0.144 4.144 19 H 0.122 0.878 20 C -0.183 4.183 21 C -0.144 4.144 22 H 0.116 0.884 23 C -0.069 4.069 24 C 0.047 3.953 25 O -0.418 6.418 26 C 0.074 3.926 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -5.870 12.797 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.005 3.995 10 C 0.041 3.959 11 O -0.256 6.256 12 C 0.297 3.703 13 O -0.443 6.443 14 C -0.093 4.093 15 H 0.131 0.869 16 C -0.145 4.145 17 C -0.122 4.122 18 C -0.162 4.162 19 H 0.140 0.860 20 C -0.220 4.220 21 C -0.162 4.162 22 H 0.134 0.866 23 C -0.107 4.107 24 C -0.030 4.030 25 O -0.338 6.338 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.698 -6.025 12.738 16.559 hybrid contribution -0.471 1.369 -0.234 1.466 sum 8.226 -4.656 12.504 15.675 Atomic orbital electron populations 1.70005 1.07127 1.27742 1.50319 1.25650 0.95538 1.02145 0.94263 0.85734 0.78522 0.79188 0.79032 1.19113 1.21472 1.19818 1.21097 0.93735 0.90295 1.50486 0.91640 1.21022 0.93661 0.95198 0.89611 1.22599 0.88064 0.98619 0.86625 1.86465 1.41232 1.81578 1.16306 1.24582 0.89884 0.71294 0.84548 1.90583 1.21451 1.47591 1.84671 1.21205 0.94543 1.03534 0.90056 0.86940 1.21582 0.95882 0.95712 1.01315 1.21076 0.96029 1.03496 0.91604 1.22372 0.98025 0.97856 0.97969 0.86009 1.23243 1.02548 0.92870 1.03314 1.21762 0.89744 1.05128 0.99536 0.86563 1.20657 0.96931 1.02553 0.90520 1.24087 0.88035 0.94832 0.96015 1.89431 1.32226 1.27905 1.84230 1.23684 0.98285 0.79848 0.98500 0.92762 0.93106 0.94227 0.90877 0.90824 0.91001 0.89103 0.89393 0.87363 0.91983 0.91353 0.89709 0.89537 0.91650 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.24 11.74 21.45 0.25 -49.99 16 2 C 0.02 1.27 5.32 84.65 0.45 1.72 16 3 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.52 -26.64 8.16 25.60 0.21 -26.43 16 8 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 9 C 0.01 0.27 0.57 -52.23 -0.03 0.24 16 10 C 0.12 5.61 4.62 71.98 0.33 5.94 16 11 O -0.34 -15.02 9.72 -51.43 -0.50 -15.52 16 12 C 0.45 17.86 7.25 71.23 0.52 18.37 16 13 O -0.55 -24.92 15.66 21.98 0.34 -24.57 16 14 C -0.07 -2.11 2.38 -11.48 -0.03 -2.14 16 15 H 0.11 3.05 7.12 -2.39 -0.02 3.03 16 16 C -0.11 -2.48 5.25 30.66 0.16 -2.32 16 17 C -0.08 -1.45 5.84 30.46 0.18 -1.28 16 18 C -0.14 -2.28 6.19 -10.98 -0.07 -2.35 16 19 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 20 C -0.18 -3.03 9.66 30.58 0.30 -2.73 16 21 C -0.14 -2.66 6.00 -11.64 -0.07 -2.73 16 22 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 23 C -0.07 -1.74 4.59 30.25 0.14 -1.61 16 24 C 0.05 1.95 8.34 72.27 0.60 2.55 16 25 O -0.42 -19.01 12.37 -148.98 -1.84 -20.85 16 26 C 0.07 3.51 7.52 72.27 0.54 4.05 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.05 2.80 7.24 -2.39 -0.02 2.78 16 29 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 31 H 0.07 1.85 7.83 -2.39 -0.02 1.83 16 32 H 0.07 1.24 8.06 -2.39 -0.02 1.22 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.62 7.27 -2.39 -0.02 1.61 16 35 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.84 7.93 -2.39 -0.02 1.82 16 38 H 0.08 3.31 8.09 -2.39 -0.02 3.29 16 39 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 40 H 0.07 3.19 8.10 -2.39 -0.02 3.17 16 41 H 0.07 3.47 8.09 -2.39 -0.02 3.45 16 Total: -1.00 -60.95 332.83 4.52 -56.43 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 1.01 Total: 19.44 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.23 Total: -8.70 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.25 Total: -49.99 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.00 Total: -60.94 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -60.95 4.52 -56.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349055920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.960 kcal (2) G-P(sol) polarization free energy of solvation -60.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds