Wall clock time and date at job start Tue Mar 31 2020 01:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.62504 * 2 1 4 4 C 1.53009 * 109.62743 * 239.60927 * 2 1 3 5 5 C 1.50098 * 110.12947 * 190.33263 * 4 2 1 6 6 C 1.31643 * 123.78079 * 17.14367 * 5 4 2 7 7 C 1.46950 * 118.11420 * 179.57964 * 6 5 4 8 8 O 1.21538 * 119.99758 * 355.80811 * 7 6 5 9 9 O 1.34796 * 120.00415 * 175.80160 * 7 6 5 10 10 C 1.45198 * 117.00222 * 183.25688 * 9 7 6 11 11 C 1.52995 * 109.47269 * 183.06445 * 10 9 7 12 12 C 1.50699 * 112.99764 * 290.41844 * 11 10 9 13 13 H 1.08002 * 119.99868 * 116.67230 * 12 11 10 14 14 C 1.37882 * 120.00437 * 296.66856 * 12 11 10 15 15 N 1.31514 * 119.99498 * 353.77762 * 14 12 11 16 16 Si 1.86792 * 120.00317 * 173.77396 * 14 12 11 17 17 H 1.48506 * 109.47105 * 60.00127 * 16 14 12 18 18 H 1.48499 * 109.47398 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47529 * 300.00353 * 16 14 12 20 20 C 1.54036 * 113.81754 * 158.43606 * 11 10 9 21 21 O 1.44172 * 85.51859 * 223.19180 * 20 11 10 22 22 C 1.44176 * 93.33893 * 24.19253 * 21 20 11 23 23 C 1.50104 * 123.78054 * 359.86603 * 6 5 4 24 24 C 1.52873 * 110.21269 * 16.73149 * 23 6 5 25 25 H 1.09006 * 109.46942 * 180.39727 * 1 2 3 26 26 H 1.08998 * 109.46920 * 300.39000 * 1 2 3 27 27 H 1.08998 * 109.47289 * 60.39663 * 1 2 3 28 28 H 1.08989 * 109.36062 * 70.12996 * 4 2 1 29 29 H 1.09006 * 109.35946 * 310.53187 * 4 2 1 30 30 H 1.08000 * 118.11090 * 197.17044 * 5 4 2 31 31 H 1.08997 * 109.47243 * 303.06607 * 10 9 7 32 32 H 1.08999 * 109.47143 * 63.06349 * 10 9 7 33 33 H 0.97003 * 119.99577 * 185.03400 * 15 14 12 34 34 H 1.09000 * 113.86337 * 337.34214 * 20 11 10 35 35 H 1.08999 * 113.87011 * 109.04565 * 20 11 10 36 36 H 1.08999 * 113.86571 * 221.66106 * 22 21 20 37 37 H 1.09004 * 113.86798 * 89.95212 * 22 21 20 38 38 H 1.09000 * 109.35848 * 137.10841 * 23 6 5 39 39 H 1.08993 * 109.35794 * 256.70890 * 23 6 5 40 40 H 1.08994 * 109.68042 * 190.75646 * 24 23 6 41 41 H 1.08997 * 109.61101 * 70.34051 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0440 -0.7291 -1.2432 5 6 3.5234 -0.9577 -1.1333 6 6 4.1940 -0.8804 -0.0031 7 6 5.6405 -1.1374 -0.0372 8 8 6.1714 -1.4863 -1.0733 9 8 6.3785 -0.9860 1.0805 10 6 7.8113 -1.1862 0.9566 11 6 8.4664 -1.0486 2.3323 12 6 8.4456 0.3644 2.8557 13 1 7.8987 0.5984 3.7572 14 6 9.1248 1.3586 2.1838 15 7 9.8896 1.0547 1.1580 16 14 8.9586 3.1370 2.7305 17 1 9.4254 3.2692 4.1340 18 1 9.7823 4.0045 1.8506 19 1 7.5354 3.5515 2.6412 20 6 9.8421 -1.7335 2.4375 21 8 9.3823 -2.2069 3.7193 22 6 7.9915 -2.0978 3.3552 23 6 3.5654 -0.5510 1.3196 24 6 2.0493 -0.7321 1.2435 25 1 -0.3633 -1.0277 0.0071 26 1 -0.3633 0.5199 0.8865 27 1 -0.3634 0.5076 -0.8935 28 1 1.8362 -0.1265 -2.1272 29 1 1.5359 -1.6891 -1.3350 30 1 4.0693 -1.1990 -2.0333 31 1 8.0060 -2.1824 0.5595 32 1 8.2255 -0.4382 0.2805 33 1 10.4242 1.7424 0.7311 34 1 9.9976 -2.5254 1.7048 35 1 10.6781 -1.0368 2.4987 36 1 7.3598 -1.6900 4.1442 37 1 7.5819 -3.0009 2.9027 38 1 3.9718 -1.2099 2.0869 39 1 3.7897 0.4836 1.5786 40 1 1.5844 -0.3133 2.1359 41 1 1.8109 -1.7932 1.1700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349059946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:54 Heat of formation + Delta-G solvation = -105.050084 kcal Electronic energy + Delta-G solvation = -22480.232109 eV Core-core repulsion = 19133.028314 eV Total energy + Delta-G solvation = -3347.203796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04380 -39.19486 -38.20686 -35.66388 -33.02712 -32.82087 -30.84825 -29.89482 -27.36066 -25.43430 -25.22913 -24.26183 -23.12111 -22.09115 -20.49295 -19.01065 -17.94333 -17.08098 -16.59650 -15.92598 -15.54496 -14.90128 -14.60027 -14.54932 -14.39027 -14.23345 -14.16440 -13.61890 -13.33279 -12.94165 -12.64611 -12.51161 -12.17075 -12.01093 -11.97256 -11.69350 -11.59181 -10.97810 -10.87404 -10.81108 -10.63923 -10.45112 -10.32694 -10.07127 -9.95789 -9.56836 -9.33516 -9.07394 -8.98665 -8.71250 -8.33311 -6.17367 -4.22147 1.46464 3.26817 3.31571 3.33404 3.34602 3.50132 4.32355 4.54070 4.65751 4.72730 4.89698 5.02932 5.16241 5.22868 5.29339 5.35779 5.41675 5.51133 5.55641 5.72335 5.78616 5.86320 5.97010 6.05804 6.06123 6.08862 6.12314 6.18461 6.31870 6.32938 6.39524 6.48300 6.59815 6.73277 6.99543 7.15654 7.29287 7.34115 7.39304 7.78386 8.18691 8.45649 8.75292 9.41607 10.89650 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.004948 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.707282 B = 5657.157063 C = 6202.490520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.086 4.086 5 C -0.083 4.083 6 C -0.138 4.138 7 C 0.486 3.514 8 O -0.527 6.527 9 O -0.332 6.332 10 C 0.080 3.920 11 C 0.034 3.966 12 C -0.489 4.489 13 H 0.066 0.934 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.050 3.950 21 O -0.389 6.389 22 C 0.032 3.968 23 C -0.079 4.079 24 C -0.114 4.114 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.266 0.734 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.745 -2.705 -2.863 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.123 4.123 5 C -0.102 4.102 6 C -0.139 4.139 7 C 0.332 3.668 8 O -0.419 6.419 9 O -0.247 6.247 10 C 0.007 3.993 11 C 0.034 3.966 12 C -0.526 4.526 13 H 0.084 0.916 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.027 4.027 21 O -0.308 6.308 22 C -0.045 4.045 23 C -0.116 4.116 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.141 0.859 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.317 -2.794 -3.065 15.869 hybrid contribution 0.226 0.954 -0.207 1.002 sum -15.091 -1.840 -3.272 15.551 Atomic orbital electron populations 1.21815 0.94949 1.01783 1.01729 1.21261 0.95475 1.00085 0.94865 0.90600 1.20613 0.91748 1.01209 0.98728 1.22884 0.96157 0.93566 0.97577 1.20242 0.90266 1.06164 0.97258 1.21539 0.88755 0.74254 0.82243 1.90781 1.73940 1.44618 1.32595 1.86576 1.23276 1.79940 1.34865 1.23541 0.73903 0.99486 1.02411 1.21075 0.90627 0.95897 0.89022 1.20585 1.32282 0.89806 1.09948 0.91572 1.24984 0.94917 0.99357 0.94439 1.69853 1.26580 1.34339 1.21916 0.86532 0.78334 0.83928 0.78589 1.20033 1.21210 1.20013 1.23919 1.00555 0.94893 0.83336 1.89485 1.19390 1.88810 1.33156 1.23991 0.84931 0.97148 0.98436 1.20308 0.94177 1.03243 0.93832 1.21657 0.95166 1.00628 0.97656 0.92667 0.92512 0.92718 0.90224 0.89869 0.85926 0.94480 0.89191 0.92405 0.93456 0.88480 0.90379 0.92888 0.89691 0.89921 0.91203 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.10 -0.91 2.76 -90.43 -0.25 -1.16 16 3 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 4 C -0.09 -0.82 5.43 -28.17 -0.15 -0.97 16 5 C -0.08 -1.10 9.42 -36.47 -0.34 -1.45 16 6 C -0.14 -2.16 5.79 -103.25 -0.60 -2.75 16 7 C 0.49 9.85 7.83 34.26 0.27 10.12 16 8 O -0.53 -11.85 15.71 -19.29 -0.30 -12.16 16 9 O -0.33 -7.33 9.39 -40.75 -0.38 -7.71 16 10 C 0.08 1.91 4.77 37.16 0.18 2.09 16 11 C 0.03 0.84 0.56 -154.59 -0.09 0.75 16 12 C -0.49 -12.96 8.25 -34.44 -0.28 -13.25 16 13 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.07 1.74 5.21 -17.82 -0.09 1.65 16 15 N -0.89 -24.22 11.27 55.43 0.62 -23.59 16 16 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 C 0.05 1.19 7.94 37.61 0.30 1.49 16 21 O -0.39 -9.35 12.40 -35.23 -0.44 -9.79 16 22 C 0.03 0.70 8.21 37.60 0.31 1.01 16 23 C -0.08 -1.05 5.42 -28.24 -0.15 -1.21 16 24 C -0.11 -1.15 5.29 -26.61 -0.14 -1.29 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.66 8.14 -51.94 -0.42 0.23 16 29 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 30 H 0.12 1.73 7.18 -52.49 -0.38 1.36 16 31 H 0.04 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.09 2.41 6.76 -51.93 -0.35 2.05 16 33 H 0.27 6.99 8.32 -40.82 -0.34 6.65 16 34 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 35 H 0.10 2.47 7.59 -51.93 -0.39 2.07 16 36 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 37 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -29.41 336.61 -7.70 -37.11 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.55 Total: 0.93 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.71 Total: -5.69 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.62 Total: -23.59 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.12 Total: -29.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.41 -7.70 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349059946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.938 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds