Wall clock time and date at job start Tue Mar 31 2020 01:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.62504 * 2 1 4 4 C 1.53009 * 109.62743 * 239.60927 * 2 1 3 5 5 C 1.50098 * 110.12947 * 190.33263 * 4 2 1 6 6 C 1.31643 * 123.78079 * 17.14367 * 5 4 2 7 7 C 1.46950 * 118.11420 * 179.57964 * 6 5 4 8 8 O 1.21538 * 119.99758 * 355.80811 * 7 6 5 9 9 O 1.34796 * 120.00415 * 175.80160 * 7 6 5 10 10 C 1.45198 * 117.00222 * 183.25688 * 9 7 6 11 11 C 1.52995 * 109.47269 * 183.06445 * 10 9 7 12 12 C 1.50699 * 112.99764 * 290.41844 * 11 10 9 13 13 H 1.08002 * 119.99868 * 116.67230 * 12 11 10 14 14 C 1.37882 * 120.00437 * 296.66856 * 12 11 10 15 15 N 1.31514 * 119.99498 * 353.77762 * 14 12 11 16 16 Si 1.86792 * 120.00317 * 173.77396 * 14 12 11 17 17 H 1.48506 * 109.47105 * 60.00127 * 16 14 12 18 18 H 1.48499 * 109.47398 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47529 * 300.00353 * 16 14 12 20 20 C 1.54036 * 113.81754 * 158.43606 * 11 10 9 21 21 O 1.44172 * 85.51859 * 223.19180 * 20 11 10 22 22 C 1.44176 * 93.33893 * 24.19253 * 21 20 11 23 23 C 1.50104 * 123.78054 * 359.86603 * 6 5 4 24 24 C 1.52873 * 110.21269 * 16.73149 * 23 6 5 25 25 H 1.09006 * 109.46942 * 180.39727 * 1 2 3 26 26 H 1.08998 * 109.46920 * 300.39000 * 1 2 3 27 27 H 1.08998 * 109.47289 * 60.39663 * 1 2 3 28 28 H 1.08989 * 109.36062 * 70.12996 * 4 2 1 29 29 H 1.09006 * 109.35946 * 310.53187 * 4 2 1 30 30 H 1.08000 * 118.11090 * 197.17044 * 5 4 2 31 31 H 1.08997 * 109.47243 * 303.06607 * 10 9 7 32 32 H 1.08999 * 109.47143 * 63.06349 * 10 9 7 33 33 H 0.97003 * 119.99577 * 185.03400 * 15 14 12 34 34 H 1.09000 * 113.86337 * 337.34214 * 20 11 10 35 35 H 1.08999 * 113.87011 * 109.04565 * 20 11 10 36 36 H 1.08999 * 113.86571 * 221.66106 * 22 21 20 37 37 H 1.09004 * 113.86798 * 89.95212 * 22 21 20 38 38 H 1.09000 * 109.35848 * 137.10841 * 23 6 5 39 39 H 1.08993 * 109.35794 * 256.70890 * 23 6 5 40 40 H 1.08994 * 109.68042 * 190.75646 * 24 23 6 41 41 H 1.08997 * 109.61101 * 70.34051 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0440 -0.7291 -1.2432 5 6 3.5234 -0.9577 -1.1333 6 6 4.1940 -0.8804 -0.0031 7 6 5.6405 -1.1374 -0.0372 8 8 6.1714 -1.4863 -1.0733 9 8 6.3785 -0.9860 1.0805 10 6 7.8113 -1.1862 0.9566 11 6 8.4664 -1.0486 2.3323 12 6 8.4456 0.3644 2.8557 13 1 7.8987 0.5984 3.7572 14 6 9.1248 1.3586 2.1838 15 7 9.8896 1.0547 1.1580 16 14 8.9586 3.1370 2.7305 17 1 9.4254 3.2692 4.1340 18 1 9.7823 4.0045 1.8506 19 1 7.5354 3.5515 2.6412 20 6 9.8421 -1.7335 2.4375 21 8 9.3823 -2.2069 3.7193 22 6 7.9915 -2.0978 3.3552 23 6 3.5654 -0.5510 1.3196 24 6 2.0493 -0.7321 1.2435 25 1 -0.3633 -1.0277 0.0071 26 1 -0.3633 0.5199 0.8865 27 1 -0.3634 0.5076 -0.8935 28 1 1.8362 -0.1265 -2.1272 29 1 1.5359 -1.6891 -1.3350 30 1 4.0693 -1.1990 -2.0333 31 1 8.0060 -2.1824 0.5595 32 1 8.2255 -0.4382 0.2805 33 1 10.4242 1.7424 0.7311 34 1 9.9976 -2.5254 1.7048 35 1 10.6781 -1.0368 2.4987 36 1 7.3598 -1.6900 4.1442 37 1 7.5819 -3.0009 2.9027 38 1 3.9718 -1.2099 2.0869 39 1 3.7897 0.4836 1.5786 40 1 1.5844 -0.3133 2.1359 41 1 1.8109 -1.7932 1.1700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349059946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:54 Heat of formation + Delta-G solvation = -120.925131 kcal Electronic energy + Delta-G solvation = -22480.920503 eV Core-core repulsion = 19133.028314 eV Total energy + Delta-G solvation = -3347.892189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64900 -40.92733 -39.32915 -37.37019 -34.95455 -33.87407 -31.92917 -31.65745 -28.34991 -27.30054 -27.08412 -26.03830 -24.05408 -23.40681 -21.51992 -20.92667 -19.22733 -18.51230 -18.27124 -17.67540 -17.31207 -16.79145 -16.30736 -16.21934 -15.98532 -15.38352 -15.14617 -14.69915 -14.53294 -14.35687 -13.98716 -13.78263 -13.62046 -13.51201 -13.20184 -12.87900 -12.84117 -12.68069 -12.42733 -12.36432 -12.00443 -11.84563 -11.64484 -11.42487 -11.30441 -11.17000 -11.11466 -10.94661 -10.69296 -10.25876 -10.11153 -8.20147 -6.30731 0.17573 1.40916 1.42327 1.49354 1.81481 1.99880 2.38450 2.97107 3.18970 3.55605 3.69020 3.94924 4.01036 4.12607 4.21482 4.24125 4.32062 4.43281 4.44056 4.56819 4.59192 4.63383 4.72519 4.78997 4.85022 4.97048 5.01335 5.08334 5.10617 5.15573 5.19306 5.28480 5.35417 5.44274 5.48957 5.51890 5.57735 5.61732 5.67987 5.71231 6.20253 6.68834 6.80111 7.35382 8.85624 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.004948 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.707282 B = 5657.157063 C = 6202.490520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.066 0.934 4 C -0.085 4.085 5 C -0.051 4.051 6 C -0.168 4.168 7 C 0.479 3.521 8 O -0.560 6.560 9 O -0.338 6.338 10 C 0.093 3.907 11 C 0.019 3.981 12 C -0.505 4.505 13 H 0.061 0.939 14 C 0.023 3.977 15 N -0.911 5.911 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.054 3.946 21 O -0.402 6.402 22 C 0.042 3.958 23 C -0.074 4.074 24 C -0.107 4.107 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.265 0.735 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 -2.705 -2.903 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.069 4.069 6 C -0.169 4.169 7 C 0.327 3.673 8 O -0.454 6.454 9 O -0.253 6.253 10 C 0.019 3.981 11 C 0.018 3.982 12 C -0.542 4.542 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.549 5.549 16 Si 0.779 3.221 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.023 4.023 21 O -0.321 6.321 22 C -0.034 4.034 23 C -0.112 4.112 24 C -0.145 4.145 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.069 -2.797 -3.092 18.544 hybrid contribution 1.034 0.917 -0.284 1.411 sum -17.035 -1.880 -3.376 17.467 Atomic orbital electron populations 1.21767 0.92937 1.02621 1.02426 1.21265 0.97032 0.99297 0.94032 0.91533 1.20786 0.88588 1.02887 0.99865 1.23259 0.98290 0.89355 0.96028 1.20278 0.87536 1.09783 0.99347 1.22495 0.90427 0.73131 0.81213 1.90752 1.74893 1.46396 1.33347 1.86581 1.22309 1.80389 1.36052 1.23170 0.75100 0.98466 1.01367 1.21147 0.91370 0.95817 0.89826 1.20825 1.32260 0.91257 1.09906 0.92118 1.25660 0.94698 1.02787 0.94585 1.69959 1.27101 1.35171 1.22680 0.85665 0.78313 0.79753 0.78358 1.19432 1.20975 1.19643 1.23840 0.99618 0.95098 0.83757 1.89458 1.20535 1.88809 1.33300 1.24067 0.84219 0.97293 0.97828 1.20281 0.96583 1.02069 0.92221 1.21649 0.92389 1.01515 0.98914 0.91734 0.92156 0.91808 0.88094 0.87400 0.87016 0.93949 0.92673 0.92572 0.91483 0.90650 0.89512 0.90449 0.90844 0.91240 0.89853 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.20 71.98 0.66 -0.84 16 2 C -0.10 -1.50 2.76 -10.67 -0.03 -1.53 16 3 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 4 C -0.09 -1.32 5.43 29.66 0.16 -1.16 16 5 C -0.05 -1.26 9.42 24.86 0.23 -1.03 16 6 C -0.17 -5.19 5.79 -18.41 -0.11 -5.30 16 7 C 0.48 19.81 7.83 70.10 0.55 20.36 16 8 O -0.56 -25.86 15.71 19.71 0.31 -25.55 16 9 O -0.34 -15.28 9.39 -57.07 -0.54 -15.82 16 10 C 0.09 4.56 4.77 71.98 0.34 4.90 16 11 C 0.02 0.94 0.56 -52.23 -0.03 0.91 16 12 C -0.51 -27.16 8.25 25.60 0.21 -26.95 16 13 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 14 C 0.02 1.23 5.21 84.66 0.44 1.67 16 15 N -0.91 -50.80 11.27 21.45 0.24 -50.56 16 16 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.05 2.60 7.94 72.27 0.57 3.17 16 21 O -0.40 -19.12 12.40 -148.98 -1.85 -20.96 16 22 C 0.04 1.83 8.21 72.27 0.59 2.42 16 23 C -0.07 -1.94 5.42 29.62 0.16 -1.78 16 24 C -0.11 -1.90 5.29 30.67 0.16 -1.74 16 25 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.11 1.29 8.11 -2.38 -0.02 1.27 16 30 H 0.11 3.05 7.18 -2.91 -0.02 3.03 16 31 H 0.04 1.98 7.88 -2.39 -0.02 1.96 16 32 H 0.05 3.07 6.76 -2.39 -0.02 3.05 16 33 H 0.27 14.23 8.32 -92.71 -0.77 13.46 16 34 H 0.07 2.92 7.99 -2.39 -0.02 2.90 16 35 H 0.08 3.93 7.59 -2.39 -0.02 3.91 16 36 H 0.09 3.56 8.08 -2.39 -0.02 3.54 16 37 H 0.08 2.95 8.10 -2.38 -0.02 2.94 16 38 H 0.07 2.03 8.00 -2.39 -0.02 2.01 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 Total: -1.00 -64.40 336.61 5.12 -59.28 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.00 Total: 15.41 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 3.93 Total: -6.89 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.24 Total: -50.56 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -2.07 Total: -62.33 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -64.40 5.12 -59.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349059946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.648 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds