Wall clock time and date at job start Tue Mar 31 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.63040 * 2 1 4 4 C 1.53005 * 109.79204 * 120.49381 * 2 1 3 5 5 C 1.50093 * 110.13638 * 169.56735 * 4 2 1 6 6 C 1.31467 * 123.71988 * 342.69981 * 5 4 2 7 7 C 1.46956 * 117.96789 * 180.54946 * 6 5 4 8 8 O 1.21531 * 120.00152 * 354.55196 * 7 6 5 9 9 O 1.34798 * 119.99732 * 174.55091 * 7 6 5 10 10 C 1.45197 * 117.00037 * 184.79158 * 9 7 6 11 11 C 1.52998 * 109.47283 * 184.52225 * 10 9 7 12 12 C 1.50699 * 113.00137 * 286.66087 * 11 10 9 13 13 H 1.07999 * 119.99981 * 115.14641 * 12 11 10 14 14 C 1.37872 * 119.99833 * 295.14364 * 12 11 10 15 15 N 1.31514 * 120.00698 * 357.09950 * 14 12 11 16 16 Si 1.86810 * 119.99978 * 177.09762 * 14 12 11 17 17 H 1.48499 * 109.46780 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46976 * 120.00072 * 16 14 12 19 19 H 1.48499 * 109.47173 * 240.00195 * 16 14 12 20 20 C 1.54033 * 113.81539 * 154.67221 * 11 10 9 21 21 O 1.44177 * 85.51870 * 223.19838 * 20 11 10 22 22 C 1.44180 * 93.33907 * 24.19265 * 21 20 11 23 23 C 1.50093 * 123.92065 * 0.67957 * 6 5 4 24 24 C 1.53013 * 110.02304 * 342.61171 * 23 6 5 25 25 H 1.08992 * 109.47367 * 180.38717 * 1 2 3 26 26 H 1.09000 * 109.47588 * 300.38909 * 1 2 3 27 27 H 1.09008 * 109.47183 * 60.38499 * 1 2 3 28 28 H 1.09006 * 109.36023 * 289.76765 * 4 2 1 29 29 H 1.09000 * 109.35819 * 49.49617 * 4 2 1 30 30 H 1.07998 * 118.11533 * 162.80490 * 5 4 2 31 31 H 1.08998 * 109.47238 * 304.52511 * 10 9 7 32 32 H 1.09008 * 109.46991 * 64.52073 * 10 9 7 33 33 H 0.96993 * 120.00520 * 185.00802 * 15 14 12 34 34 H 1.08999 * 113.86950 * 337.34624 * 20 11 10 35 35 H 1.09002 * 113.86391 * 109.05488 * 20 11 10 36 36 H 1.09000 * 113.86279 * 221.65865 * 22 21 20 37 37 H 1.08996 * 113.97963 * 89.96798 * 22 21 20 38 38 H 1.09003 * 109.35871 * 222.48160 * 23 6 5 39 39 H 1.08994 * 109.36514 * 102.74813 * 23 6 5 40 40 H 1.08998 * 109.62835 * 169.54122 * 24 23 6 41 41 H 1.09000 * 109.62721 * 290.12727 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0480 -0.7306 1.2405 5 6 3.5270 -0.9590 1.1256 6 6 4.1914 -0.8831 -0.0063 7 6 5.6375 -1.1430 0.0247 8 8 6.2005 -1.3202 1.0871 9 8 6.3395 -1.1847 -1.1253 10 6 7.7411 -1.5514 -1.0291 11 6 8.3944 -1.4357 -2.4077 12 6 7.9850 -2.5399 -3.3480 13 1 7.4177 -2.3091 -4.2376 14 6 8.3346 -3.8448 -3.0725 15 7 9.0737 -4.1195 -2.0200 16 14 7.7583 -5.2229 -4.1944 17 1 6.9468 -4.6541 -5.3004 18 1 8.9374 -5.9280 -4.7581 19 1 6.9331 -6.1818 -3.4169 20 6 9.9141 -1.1896 -2.3572 21 8 9.6783 -0.2236 -3.4012 22 6 8.3006 -0.0272 -3.0241 23 6 3.5618 -0.5445 -1.3260 24 6 2.0452 -0.7306 -1.2460 25 1 -0.3634 -1.0276 0.0069 26 1 -0.3634 0.5198 0.8864 27 1 -0.3634 0.5079 -0.8935 28 1 1.8431 -0.1289 2.1261 29 1 1.5419 -1.6916 1.3316 30 1 4.0759 -1.2011 2.0237 31 1 8.2446 -0.8826 -0.3311 32 1 7.8244 -2.5782 -0.6726 33 1 9.3804 -5.0267 -1.8661 34 1 10.2591 -0.7514 -1.4207 35 1 10.5102 -2.0452 -2.6746 36 1 7.6169 0.0392 -3.8705 37 1 8.1506 0.7658 -2.2915 38 1 3.9661 -1.1995 -2.0978 39 1 3.7858 0.4920 -1.5779 40 1 1.5773 -0.3108 -2.1365 41 1 1.8100 -1.7924 -1.1714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349059947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:56 Heat of formation + Delta-G solvation = -105.234568 kcal Electronic energy + Delta-G solvation = -22458.071217 eV Core-core repulsion = 19110.859422 eV Total energy + Delta-G solvation = -3347.211796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06025 -39.19931 -38.21289 -35.67381 -33.03732 -32.83536 -30.84501 -29.89184 -27.36498 -25.44006 -25.23409 -24.26171 -23.12727 -22.09632 -20.49991 -19.01503 -17.93923 -17.10931 -16.59550 -15.94553 -15.54794 -14.91417 -14.58455 -14.53476 -14.39052 -14.26988 -14.15332 -13.59676 -13.32789 -12.99146 -12.61000 -12.51487 -12.18851 -12.07315 -11.91168 -11.68210 -11.64047 -11.01368 -10.88242 -10.76760 -10.63831 -10.45949 -10.32972 -10.07916 -9.94666 -9.58462 -9.30609 -9.08683 -8.99643 -8.70597 -8.35043 -6.18255 -4.23724 1.46388 3.23561 3.32153 3.32200 3.36405 3.49994 4.31841 4.53655 4.65084 4.72262 4.89135 5.02708 5.16578 5.22270 5.28669 5.35380 5.41099 5.50205 5.56841 5.72669 5.77757 5.84611 5.97148 6.01999 6.08591 6.10192 6.14252 6.18555 6.30301 6.33248 6.40076 6.48087 6.60631 6.73392 6.99141 7.15489 7.29230 7.33509 7.39880 7.77562 8.18067 8.44509 8.75075 9.40817 10.88906 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.004830 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.969795 B = 5795.159750 C = 6306.171571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.087 4.087 5 C -0.083 4.083 6 C -0.138 4.138 7 C 0.486 3.514 8 O -0.527 6.527 9 O -0.334 6.334 10 C 0.080 3.920 11 C 0.034 3.966 12 C -0.488 4.488 13 H 0.067 0.933 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.051 3.949 21 O -0.390 6.390 22 C 0.033 3.967 23 C -0.080 4.080 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 6.615 4.363 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.124 4.124 5 C -0.102 4.102 6 C -0.140 4.140 7 C 0.332 3.668 8 O -0.419 6.419 9 O -0.249 6.249 10 C 0.007 3.993 11 C 0.033 3.967 12 C -0.525 4.525 13 H 0.085 0.915 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.027 4.027 21 O -0.309 6.309 22 C -0.044 4.044 23 C -0.117 4.117 24 C -0.152 4.152 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.846 6.504 4.551 15.961 hybrid contribution -0.014 -0.983 -0.114 0.990 sum -13.860 5.521 4.438 15.565 Atomic orbital electron populations 1.21817 0.94960 1.01866 1.01677 1.21254 0.95479 0.99907 0.94936 0.90730 1.20620 0.91786 1.01268 0.98682 1.22849 0.96204 0.93611 0.97495 1.20210 0.90366 1.06222 0.97159 1.21550 0.88817 0.73689 0.82737 1.90780 1.71805 1.47227 1.32068 1.86564 1.26746 1.78562 1.33038 1.23582 0.74651 1.01054 1.00062 1.21094 0.91397 0.92964 0.91252 1.20689 1.34975 0.89719 1.07113 0.91457 1.24991 0.94917 0.98735 0.95147 1.69867 1.35167 1.20881 1.26829 0.86409 0.78689 0.81702 0.80544 1.19509 1.20860 1.20930 1.23909 0.99335 0.90560 0.88852 1.89486 1.27212 1.63085 1.51068 1.23959 0.84210 0.97714 0.98518 1.20359 0.94385 1.02752 0.94192 1.21700 0.95135 1.00849 0.97538 0.92612 0.92755 0.92510 0.90227 0.89817 0.85907 0.94418 0.89130 0.92505 0.93413 0.88551 0.90386 0.92866 0.89098 0.90370 0.91201 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.10 -0.87 2.76 -90.43 -0.25 -1.12 16 3 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 4 C -0.09 -0.82 5.43 -28.17 -0.15 -0.97 16 5 C -0.08 -1.09 9.41 -36.43 -0.34 -1.44 16 6 C -0.14 -2.14 5.78 -103.22 -0.60 -2.74 16 7 C 0.49 9.78 7.82 34.26 0.27 10.05 16 8 O -0.53 -11.80 15.66 -19.29 -0.30 -12.10 16 9 O -0.33 -7.32 9.25 -40.76 -0.38 -7.70 16 10 C 0.08 1.91 4.87 37.16 0.18 2.09 16 11 C 0.03 0.82 0.57 -154.58 -0.09 0.73 16 12 C -0.49 -12.91 8.30 -34.44 -0.29 -13.20 16 13 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.06 1.71 5.18 -17.82 -0.09 1.62 16 15 N -0.89 -24.17 11.26 55.43 0.62 -23.55 16 16 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.05 1.20 7.94 37.61 0.30 1.50 16 21 O -0.39 -9.36 12.40 -35.23 -0.44 -9.79 16 22 C 0.03 0.72 8.13 37.61 0.31 1.03 16 23 C -0.08 -1.06 5.50 -28.17 -0.15 -1.21 16 24 C -0.11 -1.18 5.29 -26.54 -0.14 -1.32 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.12 1.73 7.17 -52.49 -0.38 1.35 16 31 H 0.04 0.87 7.75 -51.93 -0.40 0.46 16 32 H 0.09 2.42 6.74 -51.92 -0.35 2.07 16 33 H 0.27 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 35 H 0.10 2.45 7.56 -51.93 -0.39 2.05 16 36 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 37 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.09 1.34 7.85 -51.93 -0.41 0.94 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -29.37 336.12 -7.68 -37.06 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.53 Total: 0.94 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.71 Total: -5.68 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.62 Total: -23.55 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.12 Total: -29.60 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.37 -7.68 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349059947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.179 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds