Wall clock time and date at job start Tue Mar 31 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.63040 * 2 1 4 4 C 1.53005 * 109.79204 * 120.49381 * 2 1 3 5 5 C 1.50093 * 110.13638 * 169.56735 * 4 2 1 6 6 C 1.31467 * 123.71988 * 342.69981 * 5 4 2 7 7 C 1.46956 * 117.96789 * 180.54946 * 6 5 4 8 8 O 1.21531 * 120.00152 * 354.55196 * 7 6 5 9 9 O 1.34798 * 119.99732 * 174.55091 * 7 6 5 10 10 C 1.45197 * 117.00037 * 184.79158 * 9 7 6 11 11 C 1.52998 * 109.47283 * 184.52225 * 10 9 7 12 12 C 1.50699 * 113.00137 * 286.66087 * 11 10 9 13 13 H 1.07999 * 119.99981 * 115.14641 * 12 11 10 14 14 C 1.37872 * 119.99833 * 295.14364 * 12 11 10 15 15 N 1.31514 * 120.00698 * 357.09950 * 14 12 11 16 16 Si 1.86810 * 119.99978 * 177.09762 * 14 12 11 17 17 H 1.48499 * 109.46780 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46976 * 120.00072 * 16 14 12 19 19 H 1.48499 * 109.47173 * 240.00195 * 16 14 12 20 20 C 1.54033 * 113.81539 * 154.67221 * 11 10 9 21 21 O 1.44177 * 85.51870 * 223.19838 * 20 11 10 22 22 C 1.44180 * 93.33907 * 24.19265 * 21 20 11 23 23 C 1.50093 * 123.92065 * 0.67957 * 6 5 4 24 24 C 1.53013 * 110.02304 * 342.61171 * 23 6 5 25 25 H 1.08992 * 109.47367 * 180.38717 * 1 2 3 26 26 H 1.09000 * 109.47588 * 300.38909 * 1 2 3 27 27 H 1.09008 * 109.47183 * 60.38499 * 1 2 3 28 28 H 1.09006 * 109.36023 * 289.76765 * 4 2 1 29 29 H 1.09000 * 109.35819 * 49.49617 * 4 2 1 30 30 H 1.07998 * 118.11533 * 162.80490 * 5 4 2 31 31 H 1.08998 * 109.47238 * 304.52511 * 10 9 7 32 32 H 1.09008 * 109.46991 * 64.52073 * 10 9 7 33 33 H 0.96993 * 120.00520 * 185.00802 * 15 14 12 34 34 H 1.08999 * 113.86950 * 337.34624 * 20 11 10 35 35 H 1.09002 * 113.86391 * 109.05488 * 20 11 10 36 36 H 1.09000 * 113.86279 * 221.65865 * 22 21 20 37 37 H 1.08996 * 113.97963 * 89.96798 * 22 21 20 38 38 H 1.09003 * 109.35871 * 222.48160 * 23 6 5 39 39 H 1.08994 * 109.36514 * 102.74813 * 23 6 5 40 40 H 1.08998 * 109.62835 * 169.54122 * 24 23 6 41 41 H 1.09000 * 109.62721 * 290.12727 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0480 -0.7306 1.2405 5 6 3.5270 -0.9590 1.1256 6 6 4.1914 -0.8831 -0.0063 7 6 5.6375 -1.1430 0.0247 8 8 6.2005 -1.3202 1.0871 9 8 6.3395 -1.1847 -1.1253 10 6 7.7411 -1.5514 -1.0291 11 6 8.3944 -1.4357 -2.4077 12 6 7.9850 -2.5399 -3.3480 13 1 7.4177 -2.3091 -4.2376 14 6 8.3346 -3.8448 -3.0725 15 7 9.0737 -4.1195 -2.0200 16 14 7.7583 -5.2229 -4.1944 17 1 6.9468 -4.6541 -5.3004 18 1 8.9374 -5.9280 -4.7581 19 1 6.9331 -6.1818 -3.4169 20 6 9.9141 -1.1896 -2.3572 21 8 9.6783 -0.2236 -3.4012 22 6 8.3006 -0.0272 -3.0241 23 6 3.5618 -0.5445 -1.3260 24 6 2.0452 -0.7306 -1.2460 25 1 -0.3634 -1.0276 0.0069 26 1 -0.3634 0.5198 0.8864 27 1 -0.3634 0.5079 -0.8935 28 1 1.8431 -0.1289 2.1261 29 1 1.5419 -1.6916 1.3316 30 1 4.0759 -1.2011 2.0237 31 1 8.2446 -0.8826 -0.3311 32 1 7.8244 -2.5782 -0.6726 33 1 9.3804 -5.0267 -1.8661 34 1 10.2591 -0.7514 -1.4207 35 1 10.5102 -2.0452 -2.6746 36 1 7.6169 0.0392 -3.8705 37 1 8.1506 0.7658 -2.2915 38 1 3.9661 -1.1995 -2.0978 39 1 3.7858 0.4920 -1.5779 40 1 1.5773 -0.3108 -2.1365 41 1 1.8100 -1.7924 -1.1714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349059947.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:56 Heat of formation + Delta-G solvation = -121.066972 kcal Electronic energy + Delta-G solvation = -22458.757762 eV Core-core repulsion = 19110.859422 eV Total energy + Delta-G solvation = -3347.898340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66034 -40.93131 -39.33151 -37.37571 -34.96367 -33.87711 -31.92910 -31.64772 -28.34928 -27.30730 -27.08766 -26.04079 -24.05748 -23.40630 -21.51558 -20.93339 -19.21279 -18.51188 -18.30365 -17.66815 -17.32370 -16.79906 -16.30314 -16.22062 -15.97560 -15.37729 -15.15026 -14.66627 -14.49018 -14.42269 -13.90701 -13.87090 -13.66998 -13.47884 -13.19862 -12.87928 -12.85961 -12.63838 -12.44052 -12.37281 -12.00484 -11.84374 -11.64112 -11.43354 -11.27442 -11.16145 -11.10444 -10.95800 -10.69458 -10.27153 -10.11714 -8.20598 -6.32025 0.18077 1.38923 1.42003 1.52853 1.80650 2.00050 2.38399 2.96486 3.19333 3.55260 3.69297 3.95632 4.01198 4.12702 4.21293 4.24368 4.32347 4.43121 4.44320 4.57113 4.59236 4.63834 4.72624 4.79269 4.85622 4.96807 5.02291 5.08063 5.11169 5.16795 5.18921 5.27539 5.35494 5.43821 5.49461 5.52393 5.58094 5.61575 5.68437 5.71041 6.19672 6.68937 6.79476 7.34946 8.85686 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.004830 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.969795 B = 5795.159750 C = 6306.171571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.086 4.086 5 C -0.052 4.052 6 C -0.167 4.167 7 C 0.479 3.521 8 O -0.559 6.559 9 O -0.340 6.340 10 C 0.094 3.906 11 C 0.019 3.981 12 C -0.504 4.504 13 H 0.061 0.939 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.283 1.283 20 C 0.054 3.946 21 O -0.401 6.401 22 C 0.043 3.957 23 C -0.075 4.075 24 C -0.110 4.110 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.265 0.735 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.826 7.365 4.460 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.122 4.122 5 C -0.070 4.070 6 C -0.168 4.168 7 C 0.327 3.673 8 O -0.454 6.454 9 O -0.255 6.255 10 C 0.019 3.981 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.079 0.921 14 C -0.178 4.178 15 N -0.550 5.550 16 Si 0.781 3.219 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.209 1.209 20 C -0.023 4.023 21 O -0.321 6.321 22 C -0.033 4.033 23 C -0.112 4.112 24 C -0.148 4.148 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.418 7.269 4.639 18.545 hybrid contribution 0.744 -1.198 -0.042 1.411 sum -15.674 6.071 4.597 17.426 Atomic orbital electron populations 1.21776 0.93132 1.02409 1.02555 1.21248 0.96866 0.99508 0.93641 0.90684 1.20793 0.88584 1.02714 1.00138 1.23211 0.98315 0.89531 0.95968 1.20253 0.87606 1.09724 0.99249 1.22514 0.90513 0.72546 0.81694 1.90751 1.72787 1.49042 1.32781 1.86573 1.25806 1.78829 1.34263 1.23190 0.76100 0.99046 0.99720 1.21162 0.91755 0.94011 0.91280 1.20911 1.35095 0.90776 1.07332 0.92074 1.25669 0.95005 1.00719 0.96414 1.69968 1.35911 1.21196 1.27945 0.85527 0.78299 0.79036 0.79016 1.18875 1.20419 1.20918 1.23835 0.98837 0.90153 0.89451 1.89459 1.28265 1.62977 1.51373 1.24031 0.83360 0.96843 0.99070 1.20329 0.96405 1.02347 0.92141 1.21700 0.92723 1.01177 0.99172 0.92244 0.91621 0.91988 0.87734 0.88053 0.87046 0.94103 0.92613 0.92558 0.91497 0.90661 0.89514 0.90530 0.91487 0.89951 0.89667 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 71.98 0.66 -0.82 16 2 C -0.09 -1.37 2.76 -10.67 -0.03 -1.40 16 3 H 0.07 1.13 8.12 -2.38 -0.02 1.11 16 4 C -0.09 -1.33 5.43 29.66 0.16 -1.17 16 5 C -0.05 -1.28 9.41 25.01 0.24 -1.04 16 6 C -0.17 -5.10 5.78 -18.26 -0.11 -5.21 16 7 C 0.48 19.69 7.82 70.11 0.55 20.24 16 8 O -0.56 -25.78 15.66 19.73 0.31 -25.47 16 9 O -0.34 -15.24 9.25 -57.09 -0.53 -15.77 16 10 C 0.09 4.59 4.87 71.98 0.35 4.94 16 11 C 0.02 0.91 0.57 -52.23 -0.03 0.88 16 12 C -0.50 -27.06 8.30 25.60 0.21 -26.84 16 13 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 14 C 0.02 1.18 5.18 84.65 0.44 1.62 16 15 N -0.91 -50.70 11.26 21.45 0.24 -50.46 16 16 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.05 2.61 7.94 72.27 0.57 3.19 16 21 O -0.40 -19.11 12.40 -148.98 -1.85 -20.96 16 22 C 0.04 1.88 8.13 72.27 0.59 2.47 16 23 C -0.08 -1.93 5.50 29.66 0.16 -1.76 16 24 C -0.11 -2.01 5.29 30.72 0.16 -1.84 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.10 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.11 3.04 7.17 -2.91 -0.02 3.02 16 31 H 0.04 1.93 7.75 -2.39 -0.02 1.91 16 32 H 0.06 3.11 6.74 -2.38 -0.02 3.09 16 33 H 0.27 14.10 8.32 -92.71 -0.77 13.33 16 34 H 0.07 2.93 7.94 -2.39 -0.02 2.91 16 35 H 0.08 3.92 7.56 -2.39 -0.02 3.90 16 36 H 0.09 3.57 8.08 -2.39 -0.02 3.55 16 37 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 38 H 0.07 2.01 7.85 -2.39 -0.02 1.99 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.20 8.12 -2.39 -0.02 1.19 16 Total: -1.00 -64.24 336.12 5.13 -59.11 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.00 Total: 15.30 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 3.93 Total: -6.76 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.24 Total: -50.46 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -2.07 Total: -62.20 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -64.24 5.13 -59.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349059947.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.960 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds