Wall clock time and date at job start Tue Mar 31 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47138 * 239.99607 * 3 2 1 5 5 H 1.48496 * 109.47465 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47254 * 119.99815 * 3 2 1 7 7 C 1.37873 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47044 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99725 * 179.97438 * 11 10 9 13 13 O 1.21345 * 120.00185 * 359.97438 * 12 11 10 14 14 C 1.49447 * 119.99712 * 180.02562 * 12 11 10 15 15 O 1.21354 * 120.00071 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99944 * 180.02562 * 14 12 11 17 17 C 1.46500 * 119.99957 * 179.97438 * 16 14 12 18 18 C 1.53950 * 113.57943 * 105.75424 * 17 16 14 19 19 C 1.53064 * 86.72866 * 89.97536 * 18 17 16 20 20 C 1.52907 * 121.17777 * 150.58516 * 19 18 17 21 21 C 1.53958 * 86.78205 * 100.75092 * 20 19 18 22 22 C 1.52915 * 121.06536 * 259.12116 * 19 18 17 23 23 C 1.52909 * 88.07110 * 24.83053 * 19 18 17 24 24 H 0.97002 * 120.00480 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47553 * 59.99759 * 9 7 2 26 26 H 1.08997 * 109.46786 * 299.99625 * 9 7 2 27 27 H 1.08995 * 109.47227 * 59.99431 * 10 9 7 28 28 H 1.08997 * 109.46535 * 299.99831 * 10 9 7 29 29 H 0.96996 * 119.99995 * 359.97438 * 11 10 9 30 30 H 0.97001 * 119.99968 * 359.97438 * 16 14 12 31 31 H 1.09002 * 112.82315 * 334.66118 * 17 16 14 32 32 H 1.09006 * 113.66206 * 204.42289 * 18 17 16 33 33 H 1.09001 * 113.66131 * 335.46726 * 18 17 16 34 34 H 1.08994 * 113.66316 * 215.21977 * 20 19 18 35 35 H 1.08997 * 113.66044 * 346.28226 * 20 19 18 36 36 H 1.09000 * 113.57861 * 270.13288 * 21 20 19 37 37 H 1.08990 * 113.65166 * 139.34938 * 21 20 19 38 38 H 1.09004 * 113.66330 * 13.63126 * 22 19 18 39 39 H 1.09001 * 113.65876 * 144.67975 * 22 19 18 40 40 H 1.09000 * 113.66588 * 220.69917 * 23 19 18 41 41 H 1.09002 * 113.66049 * 89.63812 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1869 -6.0980 0.0031 13 8 3.4004 -6.0979 0.0027 14 6 1.4397 -7.3922 0.0031 15 8 0.2262 -7.3923 0.0031 16 7 2.1137 -8.5594 0.0043 17 6 1.3812 -9.8282 0.0049 18 6 1.4057 -10.5540 -1.3525 19 6 2.6782 -11.2474 -0.8598 20 6 3.0538 -12.6487 -1.3427 21 6 4.0419 -11.9592 -2.3011 22 6 4.0600 -10.7769 -1.3153 23 6 2.1931 -11.0076 0.5704 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8714 -3.6038 0.8922 28 1 2.8727 -3.6046 -0.8877 29 1 0.5430 -4.9308 0.0024 30 1 3.0837 -8.5594 0.0047 31 1 0.3832 -9.7400 0.4344 32 1 0.5663 -11.2337 -1.5004 33 1 1.5689 -9.8896 -2.2010 34 1 3.5377 -13.2591 -0.5804 35 1 2.2418 -13.1684 -1.8512 36 1 3.6087 -11.7120 -3.2703 37 1 5.0000 -12.4720 -2.3847 38 1 4.0517 -9.8015 -1.8017 39 1 4.8266 -10.8612 -0.5450 40 1 2.9846 -10.7051 1.2560 41 1 1.5755 -11.8150 0.9640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349760351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:45 Heat of formation + Delta-G solvation = -42.387874 kcal Electronic energy + Delta-G solvation = -21295.310943 eV Core-core repulsion = 17983.117136 eV Total energy + Delta-G solvation = -3312.193807 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20863 -39.98314 -38.16375 -35.89049 -35.03570 -32.95182 -32.49329 -29.81331 -26.26270 -26.20394 -25.89073 -24.64918 -23.34770 -21.15363 -20.78470 -20.23167 -18.45424 -18.12630 -16.86238 -16.34311 -15.94457 -15.70463 -15.59270 -15.41068 -14.72926 -14.48950 -14.24614 -14.09156 -13.42261 -13.18778 -12.93538 -12.85182 -12.44774 -12.31941 -12.24947 -11.58428 -11.46410 -11.38768 -11.23931 -11.04812 -10.68665 -10.54451 -10.47880 -10.39103 -10.13646 -9.79823 -9.45198 -9.28631 -9.19989 -8.69673 -8.41625 -6.10051 -4.13922 1.60567 2.51349 3.30589 3.34810 3.37488 3.41392 3.85084 4.03979 4.10768 4.22260 4.40160 4.44000 4.48731 4.52923 4.75678 5.10503 5.24039 5.26681 5.34332 5.35156 5.40968 5.47191 5.53857 5.60376 5.66013 5.68902 5.76072 6.02176 6.11410 6.17934 6.23691 6.30937 6.59462 6.69196 7.08420 7.46908 7.57830 7.67853 7.87029 7.93648 8.21197 8.33927 8.91474 9.50947 11.01402 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.002666 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.466154 B =10498.885737 C =10866.361597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.510 3.490 15 O -0.519 6.519 16 N -0.687 5.687 17 C 0.120 3.880 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.133 4.133 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -25.416 -1.519 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.276 3.724 13 O -0.412 6.412 14 C 0.291 3.709 15 O -0.394 6.394 16 N -0.341 5.341 17 C 0.015 3.985 18 C -0.165 4.165 19 C -0.108 4.108 20 C -0.164 4.164 21 C -0.176 4.176 22 C -0.160 4.160 23 C -0.171 4.171 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.246 0.754 30 H 0.249 0.751 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.386 -25.242 -1.515 25.665 hybrid contribution 0.405 0.916 -0.027 1.001 sum 4.791 -24.326 -1.541 24.841 Atomic orbital electron populations 1.69948 1.06099 1.27079 1.49964 1.25000 0.94902 0.99438 0.94920 0.86552 0.79491 0.82598 0.78762 1.20102 1.21227 1.20093 1.20975 0.93185 0.90259 1.51868 0.92216 1.19351 0.94180 0.90844 0.98247 1.21938 0.96281 0.80752 1.01333 1.46234 1.11795 1.05781 1.69824 1.19967 0.87713 0.85252 0.79425 1.90727 1.13224 1.87539 1.49684 1.20482 0.87765 0.85553 0.77064 1.90753 1.13438 1.87610 1.47565 1.45436 1.11108 1.04201 1.73326 1.21907 0.97037 0.82260 0.97330 1.23190 0.96733 0.98841 0.97761 1.22574 0.95145 0.97010 0.96091 1.22734 0.99211 0.95494 0.98939 1.22793 0.99623 0.97383 0.97838 1.22727 0.95328 0.98883 0.99070 1.23184 1.00063 0.97465 0.96396 0.92703 0.95660 0.95660 0.91857 0.91861 0.75371 0.75100 0.87660 0.88670 0.90679 0.89990 0.91414 0.90251 0.91513 0.91016 0.89610 0.90518 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -12.56 5.55 -60.73 -0.34 -12.90 16 12 C 0.50 8.60 7.89 -11.59 -0.09 8.51 16 13 O -0.53 -10.10 16.48 5.50 0.09 -10.01 16 14 C 0.51 7.69 7.89 -11.59 -0.09 7.60 16 15 O -0.52 -8.79 16.10 5.49 0.09 -8.70 16 16 N -0.69 -8.04 5.25 -53.28 -0.28 -8.32 16 17 C 0.12 1.14 4.29 -66.95 -0.29 0.86 16 18 C -0.13 -1.05 7.65 -26.20 -0.20 -1.25 16 19 C -0.11 -0.78 1.03 -154.63 -0.16 -0.94 16 20 C -0.13 -0.79 7.84 -26.28 -0.21 -1.00 16 21 C -0.14 -0.93 8.08 -25.75 -0.21 -1.13 16 22 C -0.12 -0.91 7.21 -26.28 -0.19 -1.10 16 23 C -0.13 -0.95 7.58 -26.28 -0.20 -1.15 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.41 7.18 7.94 -40.82 -0.32 6.86 16 30 H 0.41 4.50 7.56 -40.82 -0.31 4.19 16 31 H 0.11 1.10 7.50 -51.93 -0.39 0.71 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -30.70 345.29 -8.21 -38.91 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.48 Total: 5.15 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.21 Total: -0.17 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.12 Total: -46.64 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.70 -8.21 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349760351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.477 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds