Wall clock time and date at job start Tue Mar 31 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47138 * 239.99607 * 3 2 1 5 5 H 1.48496 * 109.47465 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47254 * 119.99815 * 3 2 1 7 7 C 1.37873 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47044 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99725 * 179.97438 * 11 10 9 13 13 O 1.21345 * 120.00185 * 359.97438 * 12 11 10 14 14 C 1.49447 * 119.99712 * 180.02562 * 12 11 10 15 15 O 1.21354 * 120.00071 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99944 * 180.02562 * 14 12 11 17 17 C 1.46500 * 119.99957 * 179.97438 * 16 14 12 18 18 C 1.53950 * 113.57943 * 105.75424 * 17 16 14 19 19 C 1.53064 * 86.72866 * 89.97536 * 18 17 16 20 20 C 1.52907 * 121.17777 * 150.58516 * 19 18 17 21 21 C 1.53958 * 86.78205 * 100.75092 * 20 19 18 22 22 C 1.52915 * 121.06536 * 259.12116 * 19 18 17 23 23 C 1.52909 * 88.07110 * 24.83053 * 19 18 17 24 24 H 0.97002 * 120.00480 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47553 * 59.99759 * 9 7 2 26 26 H 1.08997 * 109.46786 * 299.99625 * 9 7 2 27 27 H 1.08995 * 109.47227 * 59.99431 * 10 9 7 28 28 H 1.08997 * 109.46535 * 299.99831 * 10 9 7 29 29 H 0.96996 * 119.99995 * 359.97438 * 11 10 9 30 30 H 0.97001 * 119.99968 * 359.97438 * 16 14 12 31 31 H 1.09002 * 112.82315 * 334.66118 * 17 16 14 32 32 H 1.09006 * 113.66206 * 204.42289 * 18 17 16 33 33 H 1.09001 * 113.66131 * 335.46726 * 18 17 16 34 34 H 1.08994 * 113.66316 * 215.21977 * 20 19 18 35 35 H 1.08997 * 113.66044 * 346.28226 * 20 19 18 36 36 H 1.09000 * 113.57861 * 270.13288 * 21 20 19 37 37 H 1.08990 * 113.65166 * 139.34938 * 21 20 19 38 38 H 1.09004 * 113.66330 * 13.63126 * 22 19 18 39 39 H 1.09001 * 113.65876 * 144.67975 * 22 19 18 40 40 H 1.09000 * 113.66588 * 220.69917 * 23 19 18 41 41 H 1.09002 * 113.66049 * 89.63812 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1869 -6.0980 0.0031 13 8 3.4004 -6.0979 0.0027 14 6 1.4397 -7.3922 0.0031 15 8 0.2262 -7.3923 0.0031 16 7 2.1137 -8.5594 0.0043 17 6 1.3812 -9.8282 0.0049 18 6 1.4057 -10.5540 -1.3525 19 6 2.6782 -11.2474 -0.8598 20 6 3.0538 -12.6487 -1.3427 21 6 4.0419 -11.9592 -2.3011 22 6 4.0600 -10.7769 -1.3153 23 6 2.1931 -11.0076 0.5704 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8714 -3.6038 0.8922 28 1 2.8727 -3.6046 -0.8877 29 1 0.5430 -4.9308 0.0024 30 1 3.0837 -8.5594 0.0047 31 1 0.3832 -9.7400 0.4344 32 1 0.5663 -11.2337 -1.5004 33 1 1.5689 -9.8896 -2.2010 34 1 3.5377 -13.2591 -0.5804 35 1 2.2418 -13.1684 -1.8512 36 1 3.6087 -11.7120 -3.2703 37 1 5.0000 -12.4720 -2.3847 38 1 4.0517 -9.8015 -1.8017 39 1 4.8266 -10.8612 -0.5450 40 1 2.9846 -10.7051 1.2560 41 1 1.5755 -11.8150 0.9640 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349760351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:44 Heat of formation + Delta-G solvation = -62.746241 kcal Electronic energy + Delta-G solvation = -21296.193748 eV Core-core repulsion = 17983.117136 eV Total energy + Delta-G solvation = -3313.076612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.09752 -41.10121 -39.46430 -37.00183 -36.42139 -34.87472 -33.50122 -31.70344 -27.65831 -26.84349 -26.61974 -25.93357 -24.46890 -22.89507 -21.75418 -21.40692 -19.61037 -18.92935 -18.58432 -17.84792 -17.14550 -16.73976 -16.56023 -16.40339 -16.25517 -15.90490 -15.65297 -15.12227 -14.63290 -14.56298 -14.30060 -13.70911 -13.51599 -13.27604 -13.15474 -12.93298 -12.89425 -12.81440 -12.54973 -12.28076 -12.11369 -12.01173 -11.69427 -11.46549 -11.09440 -11.07465 -10.80914 -10.67566 -10.61624 -10.26914 -10.18708 -8.23810 -6.35342 0.28499 1.28123 1.43340 1.45404 1.53582 2.08248 2.39413 2.64936 3.11044 3.38528 3.44598 3.50080 3.60540 3.79666 3.88598 3.99507 4.37402 4.43861 4.52847 4.56962 4.73158 4.79081 4.80120 4.80415 4.90817 4.92265 5.01587 5.04474 5.05935 5.10873 5.15619 5.37500 5.42260 5.53843 5.54176 5.58157 5.74870 5.93393 6.12088 6.34132 6.69009 6.78835 6.90464 7.34269 8.88074 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.002666 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.466154 B =10498.885737 C =10866.361597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.138 3.862 11 N -0.688 5.688 12 C 0.500 3.500 13 O -0.549 6.549 14 C 0.516 3.484 15 O -0.540 6.540 16 N -0.670 5.670 17 C 0.105 3.895 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.129 4.129 23 C -0.120 4.120 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.414 0.586 30 H 0.417 0.583 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -26.790 -1.314 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.083 0.917 9 C -0.019 4.019 10 C 0.015 3.985 11 N -0.339 5.339 12 C 0.280 3.720 13 O -0.427 6.427 14 C 0.297 3.703 15 O -0.418 6.418 16 N -0.322 5.322 17 C 0.000 4.000 18 C -0.163 4.163 19 C -0.106 4.106 20 C -0.156 4.156 21 C -0.178 4.178 22 C -0.166 4.166 23 C -0.157 4.157 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.251 0.749 30 H 0.255 0.745 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.497 -26.668 -1.312 27.260 hybrid contribution 0.073 1.265 -0.106 1.272 sum 5.570 -25.403 -1.418 26.045 Atomic orbital electron populations 1.70070 1.07723 1.28131 1.50879 1.25926 0.95779 1.03317 0.94382 0.85451 0.78215 0.77863 0.79236 1.19175 1.20845 1.19141 1.21424 0.93771 0.91551 1.51705 0.91667 1.19171 0.94333 0.91915 0.96440 1.21488 0.95102 0.80736 1.01171 1.46073 1.11920 1.05462 1.70445 1.20333 0.87569 0.85732 0.78346 1.90714 1.13958 1.87898 1.50164 1.19983 0.87261 0.85478 0.77623 1.90752 1.14040 1.87705 1.49260 1.45436 1.11411 1.04063 1.71290 1.22201 0.96992 0.81797 0.98969 1.23206 0.98118 0.98736 0.96233 1.22534 0.94382 0.97774 0.95948 1.22719 0.99126 0.94832 0.98875 1.22803 1.00229 0.97139 0.97593 1.22789 0.95851 0.98429 0.99557 1.23185 0.99778 0.96384 0.96373 0.92541 0.97442 0.97414 0.91958 0.92010 0.74922 0.74505 0.88487 0.87123 0.92257 0.88868 0.90856 0.90745 0.90806 0.92578 0.88864 0.90178 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 2 C 0.00 0.26 5.46 84.65 0.46 0.73 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.02 0.96 5.09 29.85 0.15 1.11 16 10 C 0.14 5.82 5.61 86.38 0.48 6.31 16 11 N -0.69 -25.45 5.55 -464.42 -2.58 -28.03 16 12 C 0.50 17.23 7.89 87.27 0.69 17.92 16 13 O -0.55 -20.52 16.48 -3.23 -0.05 -20.57 16 14 C 0.52 15.41 7.89 87.27 0.69 16.10 16 15 O -0.54 -18.28 16.10 -3.26 -0.05 -18.33 16 16 N -0.67 -15.12 5.25 -440.84 -2.31 -17.43 16 17 C 0.10 1.86 4.29 45.63 0.20 2.05 16 18 C -0.12 -1.89 7.65 30.94 0.24 -1.65 16 19 C -0.11 -1.31 1.03 -52.26 -0.05 -1.36 16 20 C -0.12 -1.16 7.84 30.89 0.24 -0.92 16 21 C -0.14 -1.63 8.08 31.23 0.25 -1.37 16 22 C -0.13 -1.73 7.21 30.89 0.22 -1.50 16 23 C -0.12 -1.40 7.58 30.89 0.23 -1.17 16 24 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 27 H 0.06 2.64 8.14 -2.39 -0.02 2.63 16 28 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.41 14.80 7.94 -92.71 -0.74 14.06 16 30 H 0.42 8.71 7.56 -92.71 -0.70 8.01 16 31 H 0.10 1.93 7.50 -2.39 -0.02 1.91 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.06 345.29 0.95 -64.10 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.40 Total: 23.43 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.04 Total: 6.20 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.61 Total: -100.27 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.11 Total: -38.91 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.06 0.95 -64.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349760351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.359 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds