Wall clock time and date at job start Tue Mar 31 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47236 * 2 1 4 4 C 1.33584 * 118.46698 * 99.78739 * 3 2 1 5 5 C 1.41564 * 118.79695 * 0.40612 * 4 3 2 6 6 O 1.21657 * 120.00023 * 264.50904 * 5 4 3 7 7 O 1.34932 * 119.99769 * 84.50727 * 5 4 3 8 8 C 1.42894 * 116.99784 * 185.01478 * 7 5 4 9 9 C 1.53007 * 109.46861 * 184.96863 * 8 7 5 10 10 C 1.50697 * 115.54654 * 54.68464 * 9 8 7 11 11 H 1.08000 * 120.00048 * 220.08515 * 10 9 8 12 12 C 1.37879 * 120.00344 * 39.81316 * 10 9 8 13 13 N 1.31515 * 119.99955 * 355.50910 * 12 10 9 14 14 Si 1.86794 * 119.99999 * 175.50953 * 12 10 9 15 15 H 1.48497 * 109.47211 * 90.00026 * 14 12 10 16 16 H 1.48509 * 109.46936 * 209.99771 * 14 12 10 17 17 H 1.48502 * 109.47437 * 329.99798 * 14 12 10 18 18 C 1.53005 * 117.51567 * 200.38084 * 9 8 7 19 19 C 1.52994 * 117.49925 * 269.01219 * 9 8 7 20 20 C 1.50420 * 122.40930 * 180.68714 * 4 3 2 21 21 C 1.53368 * 109.46763 * 341.87299 * 20 4 3 22 22 C 1.53477 * 108.12813 * 47.71653 * 21 20 4 23 23 O 1.34305 * 118.46888 * 279.75968 * 3 2 1 24 24 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46745 * 300.00452 * 1 2 3 26 26 H 1.09004 * 109.46654 * 59.99447 * 1 2 3 27 27 H 1.08992 * 109.46610 * 239.99630 * 2 1 3 28 28 H 1.08998 * 109.46488 * 120.00127 * 2 1 3 29 29 H 1.09006 * 109.47376 * 64.97481 * 8 7 5 30 30 H 1.08994 * 109.47205 * 304.97138 * 8 7 5 31 31 H 0.96997 * 120.00364 * 184.99933 * 13 12 10 32 32 H 1.09001 * 117.49418 * 214.97267 * 18 9 8 33 33 H 1.08992 * 117.49985 * 359.97438 * 18 9 8 34 34 H 1.08999 * 117.50167 * 359.97256 * 19 9 8 35 35 H 1.09000 * 117.49498 * 144.97796 * 19 9 8 36 36 H 1.08998 * 109.45788 * 102.08813 * 20 4 3 37 37 H 1.09007 * 109.45504 * 222.03239 * 20 4 3 38 38 H 1.09003 * 109.90319 * 287.98957 * 21 20 4 39 39 H 1.09003 * 109.67547 * 167.31519 * 21 20 4 40 40 H 1.09005 * 109.70591 * 177.41294 * 22 21 20 41 41 H 1.09001 * 109.73652 * 56.82233 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4329 1.9545 1.1572 5 6 2.3767 1.1624 2.3292 6 8 1.4133 1.2372 3.0683 7 8 3.3917 0.3245 2.6264 8 6 3.2205 -0.5242 3.7632 9 6 4.5114 -1.3062 4.0147 10 6 5.7574 -0.4723 4.1657 11 1 6.6852 -0.8024 3.7222 12 6 5.7119 0.7150 4.8653 13 7 4.5643 1.1637 5.3251 14 14 7.2801 1.6860 5.1602 15 1 7.4890 2.6405 4.0419 16 1 7.1650 2.4365 6.4365 17 1 8.4331 0.7532 5.2367 18 6 4.4119 -2.5853 4.8485 19 6 4.6528 -2.6720 3.3400 20 6 2.9355 3.3684 1.2618 21 6 3.3290 3.8753 -0.1312 22 6 2.1893 3.5372 -1.1019 23 8 2.0571 2.0911 -1.1636 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.4039 -1.2216 3.5763 30 1 2.9870 0.0827 4.6379 31 1 4.5200 2.0328 5.7535 32 1 5.2478 -2.8236 5.5061 33 1 3.4268 -2.8696 5.2183 34 1 3.8261 -3.0138 2.7172 35 1 5.6471 -2.9673 3.0050 36 1 2.1514 4.0029 1.6748 37 1 3.8071 3.3964 1.9159 38 1 4.2471 3.3871 -0.4581 39 1 3.4776 4.9547 -0.1005 40 1 2.4224 3.9275 -2.0927 41 1 1.2582 3.9765 -0.7437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350066838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:35 Heat of formation + Delta-G solvation = -108.946755 kcal Electronic energy + Delta-G solvation = -23129.288916 eV Core-core repulsion = 19781.916148 eV Total energy + Delta-G solvation = -3347.372768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97381 -40.59290 -38.57826 -36.76897 -35.40480 -35.16486 -34.19600 -31.45362 -28.50937 -27.48762 -26.83122 -25.80887 -23.30862 -23.00912 -22.46910 -21.11985 -19.87123 -18.81804 -18.56565 -17.72168 -17.43616 -16.91192 -16.45261 -16.26767 -15.67939 -15.34003 -15.09243 -14.86142 -14.77583 -14.54082 -14.02194 -13.82049 -13.74554 -13.45098 -13.08594 -12.92022 -12.87387 -12.74681 -12.36444 -12.28479 -12.17742 -12.13243 -11.79656 -11.73431 -11.50843 -11.29721 -11.12806 -10.90944 -10.67830 -10.15314 -9.41947 -8.02007 -6.21378 0.64950 1.25041 1.39034 1.40310 1.50526 2.02380 2.38587 2.44114 3.04673 3.49176 3.57924 3.76135 3.86982 4.03333 4.10614 4.16924 4.20443 4.24957 4.32909 4.42082 4.47877 4.53236 4.61494 4.69570 4.79075 4.83922 4.87903 4.90159 4.93199 4.99068 5.07269 5.14889 5.16403 5.19552 5.24907 5.45241 5.51379 5.81959 5.87331 6.25520 6.31952 6.76805 7.03424 7.42801 8.91691 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.006606 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.156704 B = 4237.489302 C = 5266.152324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C 0.166 3.834 4 C -0.305 4.305 5 C 0.526 3.474 6 O -0.554 6.554 7 O -0.329 6.329 8 C 0.120 3.880 9 C 0.004 3.996 10 C -0.495 4.495 11 H 0.056 0.944 12 C 0.025 3.975 13 N -0.908 5.908 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.185 4.185 19 C -0.184 4.184 20 C -0.061 4.061 21 C -0.147 4.147 22 C 0.053 3.947 23 O -0.307 6.307 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.257 0.743 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.148 0.852 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 3.687 -14.261 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C 0.118 3.882 4 C -0.308 4.308 5 C 0.373 3.627 6 O -0.447 6.447 7 O -0.244 6.244 8 C 0.045 3.955 9 C 0.003 3.997 10 C -0.533 4.533 11 H 0.075 0.925 12 C -0.174 4.174 13 N -0.546 5.546 14 Si 0.780 3.220 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.223 4.223 19 C -0.221 4.221 20 C -0.099 4.099 21 C -0.184 4.184 22 C -0.020 4.020 23 O -0.219 6.219 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.131 0.869 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.165 0.835 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.791 3.739 -14.056 15.656 hybrid contribution 0.749 0.590 1.228 1.555 sum -5.042 4.329 -12.828 14.447 Atomic orbital electron populations 1.21691 0.91945 1.03669 1.02369 1.20877 0.98479 0.89541 1.04352 1.20871 0.90198 0.93452 0.83701 1.19286 1.19287 0.99922 0.92283 1.20002 0.79718 0.77598 0.85372 1.90761 1.35018 1.67090 1.51793 1.86288 1.42976 1.48115 1.47027 1.22197 0.95371 0.90371 0.87525 1.19066 0.93858 0.86245 1.00487 1.20686 0.93971 1.06100 1.32510 0.92546 1.25681 0.98947 0.98277 0.94520 1.69950 1.25650 1.18907 1.40113 0.85607 0.80224 0.78760 0.77448 1.20208 1.20986 1.18909 1.22960 1.01018 1.04804 0.93547 1.22944 1.01599 1.03036 0.94494 1.20191 1.00319 0.89736 0.99615 1.22217 0.99178 1.04123 0.92870 1.23895 0.99143 0.75732 1.03270 1.86136 1.86288 1.23145 1.26354 0.89835 0.94289 0.90145 0.86877 0.91982 0.95774 0.90018 0.93313 0.89856 0.90058 0.89301 0.89599 0.90453 0.92621 0.90731 0.86359 0.83460 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.90 71.98 0.71 -2.71 16 2 C -0.10 -2.76 5.89 29.85 0.18 -2.58 16 3 C 0.17 5.22 5.95 24.63 0.15 5.37 16 4 C -0.31 -11.52 5.51 -20.19 -0.11 -11.63 16 5 C 0.53 24.77 5.00 68.64 0.34 25.11 16 6 O -0.55 -28.71 16.77 19.32 0.32 -28.39 16 7 O -0.33 -16.98 9.43 -58.48 -0.55 -17.53 16 8 C 0.12 6.28 4.49 71.98 0.32 6.60 16 9 C 0.00 0.20 2.14 -52.93 -0.11 0.08 16 10 C -0.50 -27.66 8.76 25.60 0.22 -27.43 16 11 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 12 C 0.03 1.40 5.39 84.66 0.46 1.86 16 13 N -0.91 -53.16 10.48 21.45 0.22 -52.94 16 14 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 18 C -0.19 -8.27 9.96 30.60 0.30 -7.97 16 19 C -0.18 -7.83 9.92 30.59 0.30 -7.53 16 20 C -0.06 -1.97 5.89 29.88 0.18 -1.79 16 21 C -0.15 -3.12 6.24 30.88 0.19 -2.92 16 22 C 0.05 0.93 7.14 72.14 0.52 1.44 16 23 O -0.31 -7.70 10.40 -75.75 -0.79 -8.49 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.06 2.17 6.10 -2.39 -0.01 2.16 16 29 H 0.02 1.18 8.09 -2.38 -0.02 1.17 16 30 H 0.08 4.87 5.71 -2.39 -0.01 4.85 16 31 H 0.26 14.62 8.32 -92.71 -0.77 13.85 16 32 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.15 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.74 340.15 5.89 -63.85 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 1.01 Total: 21.45 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 3.65 Total: -24.09 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.22 Total: -52.94 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -1.02 Total: -54.41 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.74 5.89 -63.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350066838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.100 kcal (2) G-P(sol) polarization free energy of solvation -69.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds