Wall clock time and date at job start Tue Mar 31 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.97108 * 2 1 4 4 C 1.51451 * 109.98639 * 238.73618 * 2 1 3 5 5 O 1.20763 * 126.34016 * 60.93752 * 4 2 1 6 6 C 1.51845 * 107.31739 * 241.21032 * 4 2 1 7 7 C 1.55133 * 104.31610 * 335.86447 * 6 4 2 8 8 C 1.54277 * 110.02508 * 121.29824 * 2 1 3 9 9 H 1.09003 * 110.56723 * 23.92137 * 8 2 1 10 10 C 1.52998 * 110.56979 * 261.20971 * 8 2 1 11 11 C 1.50702 * 109.47438 * 174.99700 * 10 8 2 12 12 O 1.20825 * 119.99855 * 359.97438 * 11 10 8 13 13 O 1.34224 * 120.00253 * 180.02562 * 11 10 8 14 14 C 1.45205 * 117.00011 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.46704 * 29.99653 * 14 13 11 16 16 C 1.50700 * 109.46954 * 149.99920 * 14 13 11 17 17 H 1.08001 * 119.99935 * 359.97438 * 16 14 13 18 18 C 1.37871 * 119.99905 * 179.97438 * 16 14 13 19 19 N 1.31518 * 120.00005 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00096 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46999 * 60.00264 * 20 18 16 22 22 H 1.48498 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47245 * 300.00096 * 20 18 16 24 24 C 1.52995 * 109.46862 * 269.99742 * 14 13 11 25 25 C 1.52998 * 117.49987 * 128.62371 * 24 14 13 26 26 C 1.52995 * 60.00024 * 252.50738 * 25 24 14 27 27 H 1.09007 * 109.46655 * 179.81663 * 1 2 3 28 28 H 1.09004 * 109.46827 * 299.80887 * 1 2 3 29 29 H 1.08994 * 109.47691 * 59.81274 * 1 2 3 30 30 H 1.09000 * 110.44529 * 94.70065 * 6 4 2 31 31 H 1.08999 * 110.43840 * 217.22869 * 6 4 2 32 32 H 1.09000 * 111.04180 * 279.69162 * 7 6 4 33 33 H 1.08996 * 110.89832 * 156.11427 * 7 6 4 34 34 H 1.08999 * 109.46998 * 294.99379 * 10 8 2 35 35 H 1.09005 * 109.47859 * 54.99300 * 10 8 2 36 36 H 0.97002 * 119.99540 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.54942 * 274.32939 * 24 14 13 38 38 H 1.09001 * 117.49802 * 359.97438 * 25 24 14 39 39 H 1.08997 * 117.50131 * 145.01328 * 25 24 14 40 40 H 1.09000 * 117.50083 * 252.50806 * 26 25 24 41 41 H 1.09000 * 117.50255 * 107.48572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9022 1.0245 0.0000 4 6 2.0476 -0.7387 -1.2166 5 8 1.8481 -0.4447 -2.3708 6 6 2.8582 -1.9212 -0.7164 7 6 3.3064 -1.5037 0.7089 8 6 2.0583 -0.7530 1.2386 9 1 1.3129 -1.4595 1.6040 10 6 2.4480 0.2332 2.3415 11 6 2.8433 -0.5288 3.5801 12 8 2.8157 -1.7368 3.5808 13 8 3.2251 0.1343 4.6828 14 6 3.5915 -0.6645 5.8388 15 1 4.0008 -1.6183 5.5062 16 6 4.6268 0.0712 6.6499 17 1 4.9750 1.0417 6.3286 18 6 5.1296 -0.4948 7.8022 19 7 4.7059 -1.6769 8.1932 20 14 6.4135 0.4166 8.8073 21 1 5.8565 1.7167 9.2598 22 1 6.7881 -0.4002 9.9896 23 1 7.6170 0.6577 7.9715 24 6 2.3517 -0.9139 6.6999 25 6 2.0464 -2.3596 7.0966 26 6 1.1791 -1.6534 6.0527 27 1 -0.3633 -1.0278 -0.0033 28 1 -0.3633 0.5109 0.8917 29 1 -0.3634 0.5167 -0.8882 30 1 2.2391 -2.8175 -0.6762 31 1 3.7261 -2.0852 -1.3551 32 1 4.1700 -0.8399 0.6688 33 1 3.5208 -2.3795 1.3212 34 1 3.2881 0.8409 2.0052 35 1 1.5998 0.8793 2.5677 36 1 5.0599 -2.0753 9.0037 37 1 2.1167 -0.1328 7.4230 38 1 2.7285 -3.1331 6.7438 39 1 1.6105 -2.5300 8.0811 40 1 0.1726 -1.3592 6.3502 41 1 1.2909 -1.9622 5.0133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350300083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:14 Heat of formation + Delta-G solvation = -120.519907 kcal Electronic energy + Delta-G solvation = -22373.852263 eV Core-core repulsion = 19025.977645 eV Total energy + Delta-G solvation = -3347.874618 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37292 -39.48759 -37.15757 -36.11362 -34.86247 -32.66529 -31.67514 -30.88586 -27.88640 -25.29101 -24.77063 -23.19701 -21.36925 -21.16507 -20.01364 -19.27622 -19.10569 -17.16039 -16.52312 -16.34440 -15.88457 -15.51448 -15.05242 -14.59653 -14.52535 -14.20762 -13.87935 -13.64600 -13.29211 -12.91348 -12.55538 -12.45459 -12.34592 -11.93357 -11.55443 -11.50642 -11.25951 -11.19964 -11.02644 -10.92449 -10.76879 -10.69573 -10.43348 -10.29139 -9.85982 -9.71351 -9.48724 -9.32830 -9.03612 -8.66940 -8.44082 -6.16662 -4.24737 1.76442 2.98384 3.25462 3.29623 3.30753 3.56976 3.93982 4.29390 4.36765 4.59517 4.65980 4.97977 5.01620 5.06943 5.14769 5.16851 5.24169 5.31374 5.39902 5.56218 5.65107 5.71785 5.80552 5.82480 5.87913 5.94204 5.96541 6.14905 6.15851 6.27632 6.37743 6.53297 6.68430 6.98634 7.14222 7.26391 7.32461 7.39848 7.61776 7.85041 8.11116 8.63144 8.88412 9.40153 10.89917 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003980 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.537636 B = 7033.185447 C = 7446.357551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.151 4.151 3 H 0.106 0.894 4 C 0.375 3.625 5 O -0.451 6.451 6 C -0.183 4.183 7 C -0.116 4.116 8 C -0.072 4.072 9 H 0.096 0.904 10 C -0.111 4.111 11 C 0.454 3.546 12 O -0.518 6.518 13 O -0.354 6.354 14 C 0.250 3.750 15 H 0.048 0.952 16 C -0.529 4.529 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.873 5.873 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.229 4.229 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 1.461 -12.276 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 H 0.124 0.876 4 C 0.250 3.750 5 O -0.323 6.323 6 C -0.220 4.220 7 C -0.154 4.154 8 C -0.091 4.091 9 H 0.114 0.886 10 C -0.149 4.149 11 C 0.297 3.703 12 O -0.409 6.409 13 O -0.270 6.270 14 C 0.197 3.803 15 H 0.066 0.934 16 C -0.567 4.567 17 H 0.086 0.914 18 C -0.135 4.135 19 N -0.509 5.509 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.134 4.134 25 C -0.161 4.161 26 C -0.266 4.266 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.190 1.115 -12.675 14.149 hybrid contribution 0.666 0.312 0.959 1.208 sum -5.524 1.427 -11.716 13.031 Atomic orbital electron populations 1.21690 0.92380 1.02652 1.02826 1.22362 0.98125 1.01637 0.94916 0.87639 1.25040 0.75905 0.85145 0.88880 1.90397 1.51927 1.68142 1.21880 1.22974 1.01376 0.98883 0.98791 1.22610 0.97068 1.01867 0.93835 1.21807 0.98576 0.96481 0.92189 0.88611 1.21397 1.03799 0.98541 0.91119 1.23247 0.74222 0.87252 0.85595 1.90556 1.50257 1.15703 1.84356 1.86483 1.74905 1.43451 1.22155 1.20178 0.90725 0.91738 0.77636 0.93393 1.20877 1.22136 1.05364 1.08353 0.91418 1.24869 0.96645 0.95044 0.96908 1.70037 1.42094 1.15098 1.23650 0.86434 0.81411 0.79571 0.79277 1.20027 1.21120 1.20063 1.22598 0.94590 0.95094 1.01074 1.22342 1.00691 0.96355 0.96683 1.23271 0.95113 1.08815 0.99423 0.92161 0.91171 0.92030 0.87715 0.89126 0.90836 0.88845 0.88141 0.88077 0.92584 0.89430 0.89367 0.90861 0.91141 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.09 37.16 0.34 -0.85 16 2 C -0.15 -1.42 3.01 -90.74 -0.27 -1.70 16 3 H 0.11 0.90 7.83 -51.93 -0.41 0.49 16 4 C 0.37 4.08 7.17 -28.10 -0.20 3.88 16 5 O -0.45 -6.27 17.99 6.00 0.11 -6.16 16 6 C -0.18 -1.73 6.73 -26.19 -0.18 -1.90 16 7 C -0.12 -1.27 5.82 -24.56 -0.14 -1.41 16 8 C -0.07 -0.78 1.99 -88.91 -0.18 -0.96 16 9 H 0.10 1.11 7.61 -51.93 -0.39 0.72 16 10 C -0.11 -1.37 5.17 -27.88 -0.14 -1.52 16 11 C 0.45 8.34 7.00 36.01 0.25 8.59 16 12 O -0.52 -10.52 11.84 -18.75 -0.22 -10.74 16 13 O -0.35 -7.87 9.84 -39.24 -0.39 -8.26 16 14 C 0.25 6.33 2.25 -27.89 -0.06 6.27 16 15 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 16 C -0.53 -14.35 8.88 -34.44 -0.31 -14.65 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 19 N -0.87 -23.75 11.44 55.43 0.63 -23.12 16 20 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.11 -2.73 4.47 -90.62 -0.41 -3.14 16 25 C -0.12 -2.78 9.05 -26.73 -0.24 -3.02 16 26 C -0.23 -4.75 9.80 -26.74 -0.26 -5.01 16 27 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.77 7.97 -51.93 -0.41 0.35 16 33 H 0.09 1.19 7.37 -51.93 -0.38 0.80 16 34 H 0.10 1.10 8.02 -51.93 -0.42 0.68 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.09 2.17 8.11 -51.93 -0.42 1.75 16 38 H 0.09 2.12 8.05 -51.93 -0.42 1.70 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.09 1.98 5.37 -51.93 -0.28 1.71 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -29.79 336.18 -8.14 -37.92 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.42 Total: 3.39 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.90 Total: -13.65 kcal Atomic # 7 Polarization: -23.75 SS G_CDS: 0.63 Total: -23.12 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.50 Total: -25.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.79 -8.14 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.596 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds