Wall clock time and date at job start Tue Mar 31 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.97108 * 2 1 4 4 C 1.51451 * 109.98639 * 238.73618 * 2 1 3 5 5 O 1.20763 * 126.34016 * 60.93752 * 4 2 1 6 6 C 1.51845 * 107.31739 * 241.21032 * 4 2 1 7 7 C 1.55133 * 104.31610 * 335.86447 * 6 4 2 8 8 C 1.54277 * 110.02508 * 121.29824 * 2 1 3 9 9 H 1.09003 * 110.56723 * 23.92137 * 8 2 1 10 10 C 1.52998 * 110.56979 * 261.20971 * 8 2 1 11 11 C 1.50702 * 109.47438 * 174.99700 * 10 8 2 12 12 O 1.20825 * 119.99855 * 359.97438 * 11 10 8 13 13 O 1.34224 * 120.00253 * 180.02562 * 11 10 8 14 14 C 1.45205 * 117.00011 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.46704 * 29.99653 * 14 13 11 16 16 C 1.50700 * 109.46954 * 149.99920 * 14 13 11 17 17 H 1.08001 * 119.99935 * 359.97438 * 16 14 13 18 18 C 1.37871 * 119.99905 * 179.97438 * 16 14 13 19 19 N 1.31518 * 120.00005 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00096 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46999 * 60.00264 * 20 18 16 22 22 H 1.48498 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47245 * 300.00096 * 20 18 16 24 24 C 1.52995 * 109.46862 * 269.99742 * 14 13 11 25 25 C 1.52998 * 117.49987 * 128.62371 * 24 14 13 26 26 C 1.52995 * 60.00024 * 252.50738 * 25 24 14 27 27 H 1.09007 * 109.46655 * 179.81663 * 1 2 3 28 28 H 1.09004 * 109.46827 * 299.80887 * 1 2 3 29 29 H 1.08994 * 109.47691 * 59.81274 * 1 2 3 30 30 H 1.09000 * 110.44529 * 94.70065 * 6 4 2 31 31 H 1.08999 * 110.43840 * 217.22869 * 6 4 2 32 32 H 1.09000 * 111.04180 * 279.69162 * 7 6 4 33 33 H 1.08996 * 110.89832 * 156.11427 * 7 6 4 34 34 H 1.08999 * 109.46998 * 294.99379 * 10 8 2 35 35 H 1.09005 * 109.47859 * 54.99300 * 10 8 2 36 36 H 0.97002 * 119.99540 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.54942 * 274.32939 * 24 14 13 38 38 H 1.09001 * 117.49802 * 359.97438 * 25 24 14 39 39 H 1.08997 * 117.50131 * 145.01328 * 25 24 14 40 40 H 1.09000 * 117.50083 * 252.50806 * 26 25 24 41 41 H 1.09000 * 117.50255 * 107.48572 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9022 1.0245 0.0000 4 6 2.0476 -0.7387 -1.2166 5 8 1.8481 -0.4447 -2.3708 6 6 2.8582 -1.9212 -0.7164 7 6 3.3064 -1.5037 0.7089 8 6 2.0583 -0.7530 1.2386 9 1 1.3129 -1.4595 1.6040 10 6 2.4480 0.2332 2.3415 11 6 2.8433 -0.5288 3.5801 12 8 2.8157 -1.7368 3.5808 13 8 3.2251 0.1343 4.6828 14 6 3.5915 -0.6645 5.8388 15 1 4.0008 -1.6183 5.5062 16 6 4.6268 0.0712 6.6499 17 1 4.9750 1.0417 6.3286 18 6 5.1296 -0.4948 7.8022 19 7 4.7059 -1.6769 8.1932 20 14 6.4135 0.4166 8.8073 21 1 5.8565 1.7167 9.2598 22 1 6.7881 -0.4002 9.9896 23 1 7.6170 0.6577 7.9715 24 6 2.3517 -0.9139 6.6999 25 6 2.0464 -2.3596 7.0966 26 6 1.1791 -1.6534 6.0527 27 1 -0.3633 -1.0278 -0.0033 28 1 -0.3633 0.5109 0.8917 29 1 -0.3634 0.5167 -0.8882 30 1 2.2391 -2.8175 -0.6762 31 1 3.7261 -2.0852 -1.3551 32 1 4.1700 -0.8399 0.6688 33 1 3.5208 -2.3795 1.3212 34 1 3.2881 0.8409 2.0052 35 1 1.5998 0.8793 2.5677 36 1 5.0599 -2.0753 9.0037 37 1 2.1167 -0.1328 7.4230 38 1 2.7285 -3.1331 6.7438 39 1 1.6105 -2.5300 8.0811 40 1 0.1726 -1.3592 6.3502 41 1 1.2909 -1.9622 5.0133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350300083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:13 Heat of formation + Delta-G solvation = -135.372605 kcal Electronic energy + Delta-G solvation = -22374.496324 eV Core-core repulsion = 19025.977645 eV Total energy + Delta-G solvation = -3348.518679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55336 -40.78085 -38.49932 -37.50510 -36.54548 -34.67855 -32.46326 -31.93468 -29.77505 -26.42664 -25.57744 -25.01523 -23.05312 -22.48723 -21.35955 -20.82228 -20.08874 -18.85880 -18.21246 -17.57645 -17.08189 -16.73393 -16.64577 -16.16268 -15.69762 -15.51714 -15.13506 -14.65722 -14.47061 -14.34483 -13.88149 -13.58149 -13.40819 -13.14332 -13.09895 -12.93312 -12.75721 -12.70764 -12.31823 -12.20653 -12.15288 -11.98719 -11.75171 -11.63973 -11.57628 -11.32076 -11.06926 -10.89091 -10.55334 -10.41267 -10.34294 -8.19108 -6.35507 0.90758 1.44055 1.46111 1.51818 1.54042 2.10151 2.46344 3.08605 3.11626 3.25916 3.49640 3.69974 3.77087 4.09473 4.16040 4.21643 4.24916 4.34472 4.35390 4.47119 4.50523 4.53731 4.55424 4.76796 4.84170 4.84573 4.90405 4.95785 5.02290 5.06160 5.15416 5.23251 5.29145 5.31415 5.40598 5.44196 5.53388 5.62151 5.92908 6.25916 6.47534 6.68827 7.13414 7.35769 8.86574 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003980 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.537636 B = 7033.185447 C = 7446.357551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 H 0.122 0.878 4 C 0.379 3.621 5 O -0.483 6.483 6 C -0.176 4.176 7 C -0.118 4.118 8 C -0.066 4.066 9 H 0.089 0.911 10 C -0.101 4.101 11 C 0.445 3.555 12 O -0.541 6.541 13 O -0.367 6.367 14 C 0.256 3.744 15 H 0.009 0.991 16 C -0.557 4.557 17 H 0.063 0.937 18 C 0.027 3.973 19 N -0.895 5.895 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.271 1.271 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.196 4.196 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.266 0.734 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 2.608 -12.685 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 H 0.140 0.860 4 C 0.257 3.743 5 O -0.358 6.358 6 C -0.214 4.214 7 C -0.155 4.155 8 C -0.085 4.085 9 H 0.107 0.893 10 C -0.138 4.138 11 C 0.291 3.709 12 O -0.432 6.432 13 O -0.284 6.284 14 C 0.203 3.797 15 H 0.027 0.973 16 C -0.594 4.594 17 H 0.081 0.919 18 C -0.176 4.176 19 N -0.531 5.531 20 Si 0.794 3.206 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.196 1.196 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.233 4.233 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.911 2.259 -13.095 14.978 hybrid contribution 0.891 -0.100 1.036 1.370 sum -6.021 2.159 -12.059 13.650 Atomic orbital electron populations 1.21717 0.91477 1.02923 1.03469 1.22282 0.98736 1.01946 0.93033 0.86001 1.25250 0.75215 0.85193 0.88669 1.90397 1.53288 1.69001 1.23114 1.22949 1.01742 0.98880 0.97815 1.22568 0.97476 1.01178 0.94319 1.21742 0.98315 0.96177 0.92251 0.89295 1.21559 1.05472 0.98583 0.88161 1.24438 0.73066 0.87539 0.85904 1.90549 1.51013 1.17036 1.84595 1.86472 1.75696 1.43521 1.22676 1.19750 0.91195 0.90063 0.78717 0.97325 1.21184 1.23439 1.05502 1.09321 0.91924 1.25668 0.98379 0.95780 0.97727 1.70151 1.42896 1.16136 1.23868 0.85434 0.78858 0.78544 0.77730 1.19280 1.20540 1.19630 1.22403 0.95711 0.95348 1.01701 1.22253 1.01075 0.95033 0.97932 1.23269 0.95494 1.05799 0.98709 0.92178 0.89932 0.91978 0.86658 0.88299 0.90381 0.91072 0.86067 0.85442 0.92503 0.90574 0.91717 0.89656 0.88031 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.09 71.98 0.65 -1.36 16 2 C -0.14 -2.28 3.01 -10.87 -0.03 -2.32 16 3 H 0.12 1.65 7.83 -2.39 -0.02 1.63 16 4 C 0.38 7.56 7.17 29.71 0.21 7.77 16 5 O -0.48 -12.79 17.99 -1.46 -0.03 -12.81 16 6 C -0.18 -3.08 6.73 30.95 0.21 -2.88 16 7 C -0.12 -2.44 5.82 32.00 0.19 -2.25 16 8 C -0.07 -1.30 1.99 -9.68 -0.02 -1.32 16 9 H 0.09 1.92 7.61 -2.39 -0.02 1.90 16 10 C -0.10 -2.26 5.17 29.85 0.15 -2.11 16 11 C 0.45 16.17 7.00 71.24 0.50 16.67 16 12 O -0.54 -22.19 11.84 21.97 0.26 -21.93 16 13 O -0.37 -16.42 9.84 -51.35 -0.51 -16.92 16 14 C 0.26 13.33 2.25 29.85 0.07 13.39 16 15 H 0.01 0.53 6.91 -2.39 -0.02 0.51 16 16 C -0.56 -30.78 8.88 25.60 0.23 -30.55 16 17 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 18 C 0.03 1.43 5.30 84.65 0.45 1.88 16 19 N -0.89 -49.46 11.44 21.45 0.25 -49.21 16 20 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 C -0.13 -6.38 4.47 -10.80 -0.05 -6.43 16 25 C -0.13 -5.69 9.05 30.59 0.28 -5.41 16 26 C -0.20 -7.91 9.80 30.59 0.30 -7.61 16 27 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.53 7.97 -2.39 -0.02 1.51 16 33 H 0.07 1.82 7.37 -2.39 -0.02 1.80 16 34 H 0.12 2.29 8.02 -2.39 -0.02 2.28 16 35 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.08 3.80 8.11 -2.38 -0.02 3.78 16 38 H 0.06 3.21 8.05 -2.39 -0.02 3.20 16 39 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.09 3.77 5.37 -2.39 -0.01 3.76 16 Total: -1.00 -65.56 336.18 6.15 -59.41 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.01 Total: 19.79 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.13 Total: -22.52 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.25 Total: -49.21 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.27 Total: -51.66 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.56 6.15 -59.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.959 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds