Wall clock time and date at job start Tue Mar 31 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.00341 * 2 1 4 4 C 1.51446 * 109.98143 * 238.71337 * 2 1 3 5 5 O 1.20762 * 126.34737 * 60.02999 * 4 2 1 6 6 C 1.51847 * 107.31589 * 240.28915 * 4 2 1 7 7 C 1.54888 * 104.43437 * 23.79336 * 6 4 2 8 8 C 1.54279 * 109.98875 * 121.29375 * 2 1 3 9 9 H 1.08991 * 110.57030 * 214.94125 * 8 2 1 10 10 C 1.52999 * 110.56703 * 337.66361 * 8 2 1 11 11 C 1.50703 * 109.47066 * 185.00055 * 10 8 2 12 12 O 1.20830 * 119.99669 * 359.97438 * 11 10 8 13 13 O 1.34230 * 120.00127 * 179.97438 * 11 10 8 14 14 C 1.45194 * 116.99831 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47606 * 329.99846 * 14 13 11 16 16 C 1.50707 * 109.47153 * 210.00212 * 14 13 11 17 17 H 1.08002 * 119.99874 * 359.97438 * 16 14 13 18 18 C 1.37868 * 119.99938 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00426 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99790 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47237 * 89.99910 * 20 18 16 22 22 H 1.48509 * 109.46959 * 209.99942 * 20 18 16 23 23 H 1.48500 * 109.46950 * 329.99355 * 20 18 16 24 24 C 1.53000 * 109.47141 * 90.00400 * 14 13 11 25 25 C 1.52999 * 117.49790 * 8.61615 * 24 14 13 26 26 C 1.52998 * 60.00080 * 252.51352 * 25 24 14 27 27 H 1.08998 * 109.47122 * 179.83773 * 1 2 3 28 28 H 1.08997 * 109.46958 * 299.83208 * 1 2 3 29 29 H 1.08995 * 109.47495 * 59.83915 * 1 2 3 30 30 H 1.09001 * 110.44335 * 142.52966 * 6 4 2 31 31 H 1.09001 * 110.44297 * 265.05524 * 6 4 2 32 32 H 1.09000 * 110.83706 * 204.16630 * 7 6 4 33 33 H 1.09000 * 111.00618 * 80.65722 * 7 6 4 34 34 H 1.09001 * 109.46667 * 304.99118 * 10 8 2 35 35 H 1.08992 * 109.47664 * 64.99457 * 10 8 2 36 36 H 0.97005 * 119.99621 * 180.02562 * 19 18 16 37 37 H 1.08994 * 115.55108 * 154.32880 * 24 14 13 38 38 H 1.08996 * 117.49644 * 0.02562 * 25 24 14 39 39 H 1.09001 * 117.49581 * 145.02419 * 25 24 14 40 40 H 1.09001 * 117.50099 * 252.51031 * 26 25 24 41 41 H 1.08993 * 117.49865 * 107.48966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0475 -0.7391 -1.2163 5 8 1.8354 -0.4546 -2.3706 6 6 2.8771 -1.9082 -0.7156 7 6 2.3367 -2.1828 0.7097 8 6 2.0573 -0.7531 1.2389 9 1 2.9743 -0.2921 1.6057 10 6 0.9959 -0.7855 2.3404 11 6 1.5769 -1.4166 3.5794 12 8 2.7223 -1.8014 3.5811 13 8 0.8220 -1.5513 4.6811 14 6 1.4471 -2.1686 5.8371 15 1 2.2053 -2.8776 5.5049 16 6 0.4022 -2.8929 6.6463 17 1 -0.6286 -2.8893 6.3242 18 6 0.7621 -3.5593 7.7983 19 7 2.0173 -3.5634 8.1909 20 14 -0.5329 -4.4578 8.8009 21 1 -0.6458 -5.8589 8.3219 22 1 -0.1404 -4.4544 10.2332 23 1 -1.8419 -3.7742 8.6449 24 6 2.1022 -1.0884 6.7002 25 6 1.8222 0.3715 6.3380 26 6 3.1973 -0.2366 6.0552 27 1 -0.3633 -1.0276 -0.0029 28 1 -0.3633 0.5112 0.8915 29 1 -0.3634 0.5163 -0.8885 30 1 2.7300 -2.7801 -1.3530 31 1 3.9323 -1.6374 -0.6770 32 1 3.0891 -2.6820 1.3202 33 1 1.4184 -2.7689 0.6731 34 1 0.6760 0.2316 2.5666 35 1 0.1395 -1.3691 2.0027 36 1 2.2705 -4.0326 9.0013 37 1 2.2118 -1.3331 7.7567 38 1 1.1709 0.5623 5.4852 39 1 1.7472 1.0875 7.1564 40 1 4.0271 0.0794 6.6874 41 1 3.4510 -0.4457 5.0160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350300085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:19 Heat of formation + Delta-G solvation = -115.841439 kcal Electronic energy + Delta-G solvation = -22537.814611 eV Core-core repulsion = 19190.142867 eV Total energy + Delta-G solvation = -3347.671744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50134 -39.58291 -37.31610 -36.18587 -34.71466 -32.84070 -31.85063 -30.43869 -27.91307 -25.48472 -25.05548 -23.32689 -21.53860 -21.26878 -19.98454 -19.01378 -18.73175 -17.26839 -16.78856 -16.35568 -15.96987 -15.69474 -15.13044 -14.93421 -14.47911 -14.26867 -13.79301 -13.44053 -13.20810 -12.91788 -12.59691 -12.52108 -12.26168 -12.06550 -11.62398 -11.44709 -11.38653 -11.17016 -11.03948 -10.96958 -10.76351 -10.65198 -10.52244 -10.32461 -10.10268 -9.67482 -9.51813 -9.50638 -9.13083 -8.55990 -8.46866 -6.21921 -4.29128 1.75504 2.94665 3.22269 3.28313 3.31468 3.56548 3.92644 4.26631 4.34745 4.57034 4.67892 4.90211 4.94952 5.05822 5.10818 5.16539 5.19331 5.31490 5.45010 5.50915 5.58944 5.72385 5.76765 5.81351 5.82655 5.88867 5.96687 6.06385 6.11485 6.18042 6.23597 6.42362 6.65303 6.88264 6.97612 7.16905 7.31542 7.54163 7.57581 7.82454 8.09177 8.59276 8.85032 9.35771 10.85154 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.004084 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.649417 B = 6854.654259 C = 7157.641680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 H 0.103 0.897 4 C 0.375 3.625 5 O -0.450 6.450 6 C -0.183 4.183 7 C -0.116 4.116 8 C -0.072 4.072 9 H 0.094 0.906 10 C -0.111 4.111 11 C 0.450 3.550 12 O -0.515 6.515 13 O -0.353 6.353 14 C 0.248 3.752 15 H 0.052 0.948 16 C -0.519 4.519 17 H 0.070 0.930 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.909 3.091 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.116 4.116 25 C -0.194 4.194 26 C -0.210 4.210 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.266 0.734 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 5.999 -12.424 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 H 0.121 0.879 4 C 0.251 3.749 5 O -0.323 6.323 6 C -0.221 4.221 7 C -0.153 4.153 8 C -0.090 4.090 9 H 0.113 0.887 10 C -0.149 4.149 11 C 0.293 3.707 12 O -0.406 6.406 13 O -0.269 6.269 14 C 0.196 3.804 15 H 0.070 0.930 16 C -0.557 4.557 17 H 0.088 0.912 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.135 4.135 25 C -0.232 4.232 26 C -0.247 4.247 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.322 5.948 -12.828 14.144 hybrid contribution -0.353 -0.430 0.866 1.029 sum -0.674 5.519 -11.962 13.191 Atomic orbital electron populations 1.21796 0.92410 1.02831 1.03030 1.22321 0.98323 1.01340 0.94929 0.87884 1.25051 0.76477 0.84537 0.88882 1.90398 1.52254 1.67781 1.21855 1.22936 1.01490 0.98845 0.98786 1.22566 1.02398 0.96506 0.93826 1.21747 0.98608 0.96458 0.92233 0.88724 1.21506 0.99682 1.02805 0.90920 1.23360 0.85065 0.76615 0.85674 1.90568 1.19025 1.46715 1.84247 1.86492 1.45579 1.72651 1.22222 1.20115 0.93586 0.89127 0.77574 0.93005 1.20957 0.94837 1.31786 1.08102 0.91223 1.24896 0.95904 0.96062 0.96958 1.69981 1.15979 1.42144 1.24139 0.86324 0.81301 0.79868 0.78966 1.20393 1.20967 1.19562 1.23023 0.97811 0.89920 1.02715 1.22781 0.99102 0.98458 1.02812 1.23138 0.91924 1.07401 1.02225 0.91914 0.90715 0.92074 0.89082 0.87705 0.88868 0.90878 0.88042 0.87847 0.92405 0.85361 0.89824 0.90498 0.90620 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.99 37.16 0.30 -0.94 16 2 C -0.15 -1.40 3.36 -90.74 -0.30 -1.71 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.38 4.07 7.18 -28.10 -0.20 3.87 16 5 O -0.45 -6.25 17.99 6.00 0.11 -6.14 16 6 C -0.18 -1.73 6.72 -26.32 -0.18 -1.90 16 7 C -0.12 -1.26 5.80 -24.68 -0.14 -1.40 16 8 C -0.07 -0.78 2.39 -88.90 -0.21 -0.99 16 9 H 0.09 1.09 7.89 -51.93 -0.41 0.68 16 10 C -0.11 -1.38 4.00 -27.88 -0.11 -1.49 16 11 C 0.45 8.21 6.73 36.01 0.24 8.45 16 12 O -0.52 -10.48 11.84 -18.75 -0.22 -10.70 16 13 O -0.35 -7.72 8.39 -39.26 -0.33 -8.05 16 14 C 0.25 6.30 2.41 -27.88 -0.07 6.23 16 15 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 16 C -0.52 -14.00 8.90 -34.44 -0.31 -14.30 16 17 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.06 1.72 5.20 -17.82 -0.09 1.62 16 19 N -0.89 -24.40 11.59 55.43 0.64 -23.76 16 20 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C -0.12 -2.78 5.28 -90.62 -0.48 -3.26 16 25 C -0.19 -3.93 9.79 -26.73 -0.26 -4.20 16 26 C -0.21 -4.40 9.85 -26.73 -0.26 -4.66 16 27 H 0.06 0.53 7.62 -51.93 -0.40 0.14 16 28 H 0.07 0.57 6.60 -51.93 -0.34 0.23 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.18 7.37 -51.93 -0.38 0.80 16 33 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 34 H 0.10 1.08 7.37 -51.93 -0.38 0.69 16 35 H 0.10 1.13 6.82 -51.93 -0.35 0.78 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.13 3.38 6.46 -51.93 -0.34 3.05 16 38 H 0.08 1.62 6.90 -51.93 -0.36 1.27 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 2.00 5.37 -51.93 -0.28 1.72 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -29.91 328.73 -8.06 -37.97 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.11 Total: 4.93 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.08 Total: -14.67 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.64 Total: -23.76 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.44 Total: -24.89 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.91 -8.06 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.876 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds