Wall clock time and date at job start Tue Mar 31 2020 01:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.00341 * 2 1 4 4 C 1.51446 * 109.98143 * 238.71337 * 2 1 3 5 5 O 1.20762 * 126.34737 * 60.02999 * 4 2 1 6 6 C 1.51847 * 107.31589 * 240.28915 * 4 2 1 7 7 C 1.54888 * 104.43437 * 23.79336 * 6 4 2 8 8 C 1.54279 * 109.98875 * 121.29375 * 2 1 3 9 9 H 1.08991 * 110.57030 * 214.94125 * 8 2 1 10 10 C 1.52999 * 110.56703 * 337.66361 * 8 2 1 11 11 C 1.50703 * 109.47066 * 185.00055 * 10 8 2 12 12 O 1.20830 * 119.99669 * 359.97438 * 11 10 8 13 13 O 1.34230 * 120.00127 * 179.97438 * 11 10 8 14 14 C 1.45194 * 116.99831 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47606 * 329.99846 * 14 13 11 16 16 C 1.50707 * 109.47153 * 210.00212 * 14 13 11 17 17 H 1.08002 * 119.99874 * 359.97438 * 16 14 13 18 18 C 1.37868 * 119.99938 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00426 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99790 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47237 * 89.99910 * 20 18 16 22 22 H 1.48509 * 109.46959 * 209.99942 * 20 18 16 23 23 H 1.48500 * 109.46950 * 329.99355 * 20 18 16 24 24 C 1.53000 * 109.47141 * 90.00400 * 14 13 11 25 25 C 1.52999 * 117.49790 * 8.61615 * 24 14 13 26 26 C 1.52998 * 60.00080 * 252.51352 * 25 24 14 27 27 H 1.08998 * 109.47122 * 179.83773 * 1 2 3 28 28 H 1.08997 * 109.46958 * 299.83208 * 1 2 3 29 29 H 1.08995 * 109.47495 * 59.83915 * 1 2 3 30 30 H 1.09001 * 110.44335 * 142.52966 * 6 4 2 31 31 H 1.09001 * 110.44297 * 265.05524 * 6 4 2 32 32 H 1.09000 * 110.83706 * 204.16630 * 7 6 4 33 33 H 1.09000 * 111.00618 * 80.65722 * 7 6 4 34 34 H 1.09001 * 109.46667 * 304.99118 * 10 8 2 35 35 H 1.08992 * 109.47664 * 64.99457 * 10 8 2 36 36 H 0.97005 * 119.99621 * 180.02562 * 19 18 16 37 37 H 1.08994 * 115.55108 * 154.32880 * 24 14 13 38 38 H 1.08996 * 117.49644 * 0.02562 * 25 24 14 39 39 H 1.09001 * 117.49581 * 145.02419 * 25 24 14 40 40 H 1.09001 * 117.50099 * 252.51031 * 26 25 24 41 41 H 1.08993 * 117.49865 * 107.48966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0475 -0.7391 -1.2163 5 8 1.8354 -0.4546 -2.3706 6 6 2.8771 -1.9082 -0.7156 7 6 2.3367 -2.1828 0.7097 8 6 2.0573 -0.7531 1.2389 9 1 2.9743 -0.2921 1.6057 10 6 0.9959 -0.7855 2.3404 11 6 1.5769 -1.4166 3.5794 12 8 2.7223 -1.8014 3.5811 13 8 0.8220 -1.5513 4.6811 14 6 1.4471 -2.1686 5.8371 15 1 2.2053 -2.8776 5.5049 16 6 0.4022 -2.8929 6.6463 17 1 -0.6286 -2.8893 6.3242 18 6 0.7621 -3.5593 7.7983 19 7 2.0173 -3.5634 8.1909 20 14 -0.5329 -4.4578 8.8009 21 1 -0.6458 -5.8589 8.3219 22 1 -0.1404 -4.4544 10.2332 23 1 -1.8419 -3.7742 8.6449 24 6 2.1022 -1.0884 6.7002 25 6 1.8222 0.3715 6.3380 26 6 3.1973 -0.2366 6.0552 27 1 -0.3633 -1.0276 -0.0029 28 1 -0.3633 0.5112 0.8915 29 1 -0.3634 0.5163 -0.8885 30 1 2.7300 -2.7801 -1.3530 31 1 3.9323 -1.6374 -0.6770 32 1 3.0891 -2.6820 1.3202 33 1 1.4184 -2.7689 0.6731 34 1 0.6760 0.2316 2.5666 35 1 0.1395 -1.3691 2.0027 36 1 2.2705 -4.0326 9.0013 37 1 2.2118 -1.3331 7.7567 38 1 1.1709 0.5623 5.4852 39 1 1.7472 1.0875 7.1564 40 1 4.0271 0.0794 6.6874 41 1 3.4510 -0.4457 5.0160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350300085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:18 Heat of formation + Delta-G solvation = -131.104866 kcal Electronic energy + Delta-G solvation = -22538.476483 eV Core-core repulsion = 19190.142867 eV Total energy + Delta-G solvation = -3348.333616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68871 -40.85862 -38.60300 -37.55622 -36.38469 -34.84285 -32.69673 -31.45404 -29.77740 -26.52958 -25.89757 -25.16979 -23.16730 -22.61802 -21.19978 -20.59677 -19.65133 -18.83083 -18.42860 -17.70261 -17.33831 -17.01057 -16.57141 -15.98132 -15.87177 -15.68271 -15.13446 -14.48141 -14.31860 -14.17681 -13.95100 -13.61312 -13.47376 -13.23189 -13.08459 -12.91886 -12.84650 -12.77936 -12.34192 -12.26918 -12.18160 -11.98420 -11.87597 -11.63529 -11.43909 -11.29549 -11.19722 -10.93623 -10.44598 -10.37872 -10.37133 -8.24269 -6.39984 0.90186 1.43350 1.44214 1.49487 1.55983 2.10065 2.45466 3.04290 3.10652 3.19569 3.46180 3.67035 3.79669 4.07888 4.11681 4.17568 4.24445 4.30500 4.32969 4.34516 4.49273 4.55114 4.61060 4.72092 4.80275 4.84329 4.91693 4.98410 5.03939 5.05579 5.10202 5.22364 5.30278 5.31278 5.34061 5.39941 5.57452 5.60907 5.99213 6.21404 6.46979 6.66467 7.10601 7.32280 8.82739 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.004084 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.649417 B = 6854.654259 C = 7157.641680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 H 0.120 0.880 4 C 0.379 3.621 5 O -0.482 6.482 6 C -0.177 4.177 7 C -0.117 4.117 8 C -0.067 4.067 9 H 0.088 0.912 10 C -0.101 4.101 11 C 0.442 3.558 12 O -0.540 6.540 13 O -0.362 6.362 14 C 0.257 3.743 15 H 0.007 0.993 16 C -0.543 4.543 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.913 5.913 20 Si 0.975 3.025 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.150 4.150 25 C -0.166 4.166 26 C -0.199 4.199 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.268 0.732 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 7.271 -12.955 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 H 0.137 0.863 4 C 0.257 3.743 5 O -0.358 6.358 6 C -0.214 4.214 7 C -0.155 4.155 8 C -0.086 4.086 9 H 0.107 0.893 10 C -0.138 4.138 11 C 0.287 3.713 12 O -0.431 6.431 13 O -0.278 6.278 14 C 0.203 3.797 15 H 0.025 0.975 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.798 3.202 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.169 4.169 25 C -0.203 4.203 26 C -0.236 4.236 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.520 7.229 -13.372 15.277 hybrid contribution 0.086 -0.845 0.980 1.297 sum -1.434 6.384 -12.391 14.013 Atomic orbital electron populations 1.21849 0.91484 1.03165 1.03835 1.22244 0.98956 1.01613 0.92986 0.86252 1.25266 0.75775 0.84585 0.88687 1.90397 1.53534 1.68729 1.23098 1.22912 1.01914 0.98845 0.97768 1.22523 1.01981 0.96619 0.94348 1.21691 0.98040 0.96498 0.92338 0.89314 1.21689 1.00270 1.03894 0.87963 1.24555 0.84779 0.75971 0.86004 1.90562 1.20322 1.47704 1.84500 1.86475 1.46054 1.72747 1.22571 1.19624 0.92225 0.89094 0.78727 0.97548 1.21275 0.95066 1.32816 1.08932 0.91526 1.25747 0.97882 0.96584 0.97861 1.70110 1.17824 1.42669 1.24495 0.85306 0.78889 0.78611 0.77368 1.19885 1.20401 1.18677 1.22719 1.01165 0.91887 1.01093 1.22865 0.98134 0.95842 1.03436 1.23124 0.92550 1.06009 1.01885 0.91866 0.89200 0.92041 0.88323 0.86567 0.91125 0.90535 0.85264 0.85925 0.92308 0.88267 0.88687 0.88322 0.89281 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.99 71.98 0.57 -1.49 16 2 C -0.14 -2.22 3.36 -10.87 -0.04 -2.26 16 3 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 4 C 0.38 7.53 7.18 29.71 0.21 7.75 16 5 O -0.48 -12.75 17.99 -1.46 -0.03 -12.77 16 6 C -0.18 -3.09 6.72 30.86 0.21 -2.88 16 7 C -0.12 -2.43 5.80 31.92 0.19 -2.25 16 8 C -0.07 -1.31 2.39 -9.68 -0.02 -1.34 16 9 H 0.09 1.89 7.89 -2.39 -0.02 1.87 16 10 C -0.10 -2.25 4.00 29.85 0.12 -2.13 16 11 C 0.44 15.88 6.73 71.24 0.48 16.36 16 12 O -0.54 -22.29 11.84 21.95 0.26 -22.03 16 13 O -0.36 -15.81 8.39 -51.41 -0.43 -16.24 16 14 C 0.26 13.39 2.41 29.85 0.07 13.46 16 15 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 16 C -0.54 -29.95 8.90 25.60 0.23 -29.72 16 17 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 18 C 0.02 1.04 5.20 84.65 0.44 1.48 16 19 N -0.91 -51.75 11.59 21.44 0.25 -51.50 16 20 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 C -0.15 -7.27 5.28 -10.79 -0.06 -7.33 16 25 C -0.17 -6.43 9.79 30.59 0.30 -6.13 16 26 C -0.20 -8.21 9.85 30.59 0.30 -7.91 16 27 H 0.06 0.89 7.62 -2.39 -0.02 0.88 16 28 H 0.09 1.01 6.60 -2.39 -0.02 1.00 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.81 7.37 -2.39 -0.02 1.79 16 33 H 0.08 1.52 7.95 -2.39 -0.02 1.50 16 34 H 0.13 2.23 7.37 -2.39 -0.02 2.21 16 35 H 0.12 2.33 6.82 -2.39 -0.02 2.31 16 36 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 37 H 0.10 5.40 6.46 -2.39 -0.02 5.38 16 38 H 0.09 3.45 6.90 -2.39 -0.02 3.44 16 39 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.09 3.81 5.37 -2.39 -0.01 3.80 16 Total: -1.00 -66.70 328.73 6.11 -60.59 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.03 Total: 22.14 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 3.00 Total: -24.39 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.25 Total: -51.50 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.20 Total: -51.04 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -66.70 6.11 -60.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.513 kcal (2) G-P(sol) polarization free energy of solvation -66.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds