Wall clock time and date at job start Tue Mar 31 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.97075 * 2 1 4 4 C 1.51447 * 110.01707 * 238.69976 * 2 1 3 5 5 O 1.20759 * 126.33710 * 61.01829 * 4 2 1 6 6 C 1.51835 * 107.32032 * 240.99488 * 4 2 1 7 7 C 1.54890 * 104.43420 * 336.21009 * 6 4 2 8 8 C 1.54286 * 109.98206 * 121.26941 * 2 1 3 9 9 H 1.09004 * 110.56511 * 23.94209 * 8 2 1 10 10 C 1.53004 * 110.56688 * 261.07652 * 8 2 1 11 11 C 1.50695 * 109.46843 * 174.99935 * 10 8 2 12 12 O 1.20827 * 120.00306 * 0.02562 * 11 10 8 13 13 O 1.34225 * 120.00096 * 180.02562 * 11 10 8 14 14 C 1.45201 * 117.00224 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46980 * 329.99812 * 14 13 11 16 16 C 1.50709 * 109.47119 * 209.99785 * 14 13 11 17 17 H 1.07997 * 120.00101 * 359.97438 * 16 14 13 18 18 C 1.37873 * 119.99730 * 179.97438 * 16 14 13 19 19 N 1.31519 * 119.99963 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 120.00492 * 359.97438 * 18 16 14 21 21 H 1.48499 * 109.47086 * 89.99641 * 20 18 16 22 22 H 1.48494 * 109.47311 * 210.00151 * 20 18 16 23 23 H 1.48509 * 109.46859 * 330.00067 * 20 18 16 24 24 C 1.53001 * 109.47186 * 90.00126 * 14 13 11 25 25 C 1.52993 * 117.49966 * 8.61781 * 24 14 13 26 26 C 1.52998 * 60.00152 * 252.51549 * 25 24 14 27 27 H 1.09001 * 109.47142 * 298.73481 * 1 2 3 28 28 H 1.09000 * 109.47172 * 58.72962 * 1 2 3 29 29 H 1.08994 * 109.47656 * 178.72893 * 1 2 3 30 30 H 1.08994 * 110.44499 * 94.95020 * 6 4 2 31 31 H 1.08999 * 110.44165 * 217.35247 * 6 4 2 32 32 H 1.09004 * 110.83492 * 279.42060 * 7 6 4 33 33 H 1.09003 * 110.83711 * 155.83363 * 7 6 4 34 34 H 1.08998 * 109.47021 * 294.99881 * 10 8 2 35 35 H 1.09003 * 109.46921 * 55.00084 * 10 8 2 36 36 H 0.96999 * 120.00438 * 179.97438 * 19 18 16 37 37 H 1.08998 * 115.54946 * 154.33054 * 24 14 13 38 38 H 1.09002 * 117.49958 * 0.02562 * 25 24 14 39 39 H 1.09006 * 117.50114 * 145.02383 * 25 24 14 40 40 H 1.09001 * 117.49753 * 252.50701 * 26 25 24 41 41 H 1.09003 * 117.51939 * 107.48259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9022 1.0244 0.0000 4 6 2.0484 -0.7393 -1.2159 5 8 1.8504 -0.4453 -2.3703 6 6 2.8635 -1.9181 -0.7146 7 6 3.3056 -1.5036 0.7108 8 6 2.0572 -0.7526 1.2394 9 1 1.3115 -1.4589 1.6044 10 6 2.4497 0.2342 2.3408 11 6 2.8439 -0.5271 3.5801 12 8 2.8145 -1.7350 3.5821 13 8 3.2278 0.1366 4.6818 14 6 3.5941 -0.6615 5.8382 15 1 3.0271 -1.5925 5.8314 16 6 3.2839 0.1065 7.0973 17 1 2.8549 1.0956 7.0346 18 6 3.5479 -0.4537 8.3291 19 7 3.2768 0.2162 9.4279 20 14 4.2893 -2.1648 8.4375 21 1 5.7708 -2.0629 8.4434 22 1 3.8335 -2.8235 9.6879 23 1 3.8531 -2.9684 7.2673 24 6 5.0907 -0.9754 5.7879 25 6 5.9259 -0.2655 4.7206 26 6 5.6086 -1.7554 4.5779 27 1 -0.3633 0.4941 0.9011 28 1 -0.3633 0.5334 -0.8784 29 1 -0.3634 -1.0273 -0.0228 30 1 2.2486 -2.8173 -0.6761 31 1 3.7323 -2.0791 -1.3529 32 1 4.1693 -0.8398 0.6711 33 1 3.5175 -2.3812 1.3216 34 1 3.2909 0.8396 2.0033 35 1 1.6029 0.8824 2.5665 36 1 3.4621 -0.1780 10.2945 37 1 5.5631 -1.1685 6.7510 38 1 5.4093 0.4254 4.0544 39 1 6.9482 0.0086 4.9814 40 1 6.4221 -2.4615 4.7448 41 1 4.8831 -2.0453 3.8178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350300087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:22 Heat of formation + Delta-G solvation = -111.821086 kcal Electronic energy + Delta-G solvation = -22599.000161 eV Core-core repulsion = 19251.502753 eV Total energy + Delta-G solvation = -3347.497408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53858 -39.77193 -37.41310 -36.40472 -34.99503 -32.79028 -31.75798 -31.02625 -28.71599 -25.44467 -24.84065 -22.91457 -21.88936 -21.47445 -20.40865 -19.43644 -19.21242 -17.31196 -16.67560 -16.42101 -16.26244 -15.84490 -15.43027 -14.93127 -14.64007 -14.14299 -13.83777 -13.72191 -13.40835 -13.16480 -12.75677 -12.65631 -12.43506 -12.05317 -11.98817 -11.70843 -11.54477 -11.46057 -11.17844 -10.99524 -10.87308 -10.80933 -10.75517 -10.25209 -10.06052 -9.86333 -9.67591 -9.54329 -9.34175 -8.85100 -8.71502 -6.26671 -4.29267 1.70593 2.75698 3.14641 3.27227 3.33328 3.36533 3.86902 4.23354 4.25265 4.45759 4.53510 4.56724 4.90877 4.98583 5.01422 5.08167 5.12190 5.22290 5.29219 5.45488 5.49211 5.54477 5.60658 5.63678 5.67289 5.70077 5.74940 5.76898 5.90519 6.02301 6.14712 6.18407 6.26175 6.44772 6.68122 6.74095 6.81698 7.26436 7.29473 7.47279 8.18355 8.54299 8.80550 9.30181 10.85071 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.004295 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.075353 B = 6518.362847 C = 6911.213185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.151 4.151 3 H 0.106 0.894 4 C 0.375 3.625 5 O -0.449 6.449 6 C -0.183 4.183 7 C -0.117 4.117 8 C -0.073 4.073 9 H 0.097 0.903 10 C -0.111 4.111 11 C 0.452 3.548 12 O -0.516 6.516 13 O -0.339 6.339 14 C 0.226 3.774 15 H 0.052 0.948 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.081 3.919 19 N -0.887 5.887 20 Si 0.873 3.127 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.256 1.256 24 C -0.164 4.164 25 C -0.170 4.170 26 C -0.206 4.206 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.269 0.731 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 -2.206 -16.950 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 H 0.124 0.876 4 C 0.250 3.750 5 O -0.322 6.322 6 C -0.220 4.220 7 C -0.154 4.154 8 C -0.092 4.092 9 H 0.115 0.885 10 C -0.148 4.148 11 C 0.295 3.705 12 O -0.407 6.407 13 O -0.255 6.255 14 C 0.172 3.828 15 H 0.070 0.930 16 C -0.558 4.558 17 H 0.106 0.894 18 C -0.123 4.123 19 N -0.523 5.523 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.180 1.180 24 C -0.182 4.182 25 C -0.207 4.207 26 C -0.243 4.243 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.733 -2.396 -17.297 17.478 hybrid contribution 0.649 -0.936 0.513 1.249 sum -0.084 -3.332 -16.785 17.112 Atomic orbital electron populations 1.21693 0.92286 1.02671 1.02957 1.22357 0.98227 1.01625 0.94800 0.87577 1.25015 0.76005 0.85062 0.88899 1.90402 1.51992 1.67964 1.21826 1.22928 1.01416 0.99000 0.98696 1.22577 0.97099 1.01771 0.93952 1.21827 0.98606 0.96484 0.92238 0.88483 1.21416 1.04085 0.98601 0.90742 1.23409 0.74019 0.87328 0.85714 1.90564 1.50376 1.15664 1.84047 1.86522 1.74840 1.42381 1.21736 1.20447 0.88753 0.92267 0.81330 0.93028 1.20722 1.43324 1.04898 0.86892 0.89441 1.24720 0.94895 0.97485 0.95153 1.69838 1.47052 1.37694 0.97764 0.87056 0.79561 0.85060 0.78250 1.20048 1.21495 1.18031 1.23424 0.98000 1.03081 0.93743 1.22738 1.00045 0.94578 1.03385 1.23253 1.03780 0.94192 1.03079 0.91080 0.91962 0.92166 0.87739 0.89085 0.90833 0.88947 0.87975 0.87692 0.92041 0.87511 0.88929 0.89716 0.90050 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.08 37.16 0.34 -0.80 16 2 C -0.15 -1.33 3.01 -90.73 -0.27 -1.60 16 3 H 0.11 0.84 7.83 -51.93 -0.41 0.43 16 4 C 0.37 3.84 7.18 -28.11 -0.20 3.64 16 5 O -0.45 -6.01 17.99 6.00 0.11 -5.90 16 6 C -0.18 -1.58 6.72 -26.33 -0.18 -1.76 16 7 C -0.12 -1.13 5.80 -24.69 -0.14 -1.28 16 8 C -0.07 -0.73 2.00 -88.90 -0.18 -0.90 16 9 H 0.10 1.05 7.61 -51.93 -0.40 0.66 16 10 C -0.11 -1.27 5.16 -27.88 -0.14 -1.41 16 11 C 0.45 7.71 6.72 36.00 0.24 7.96 16 12 O -0.52 -9.70 11.84 -18.75 -0.22 -9.92 16 13 O -0.34 -7.09 8.39 -39.24 -0.33 -7.42 16 14 C 0.23 5.41 2.00 -27.88 -0.06 5.35 16 15 H 0.05 1.32 6.21 -51.93 -0.32 0.99 16 16 C -0.52 -14.46 9.48 -34.44 -0.33 -14.79 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.08 2.27 5.43 -17.82 -0.10 2.17 16 19 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 20 Si 0.87 21.05 24.48 -169.99 -4.16 16.89 16 21 H -0.27 -6.37 6.72 56.52 0.38 -5.99 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 24 C -0.16 -3.59 4.45 -90.62 -0.40 -4.00 16 25 C -0.17 -3.12 9.79 -26.74 -0.26 -3.38 16 26 C -0.21 -3.81 9.85 -26.73 -0.26 -4.07 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.68 7.96 -51.93 -0.41 0.26 16 33 H 0.09 1.04 7.37 -51.93 -0.38 0.66 16 34 H 0.10 0.99 8.01 -51.93 -0.42 0.58 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 37 H 0.11 2.48 4.41 -51.93 -0.23 2.25 16 38 H 0.09 1.62 6.90 -51.93 -0.36 1.26 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.10 1.90 5.37 -51.93 -0.28 1.62 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -31.34 326.87 -7.05 -38.39 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.20 Total: 3.29 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.94 Total: -14.87 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.77 Total: -25.38 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.44 Total: -23.25 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.16 Total: 16.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.34 -7.05 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.436 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds