Wall clock time and date at job start Tue Mar 31 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.97075 * 2 1 4 4 C 1.51447 * 110.01707 * 238.69976 * 2 1 3 5 5 O 1.20759 * 126.33710 * 61.01829 * 4 2 1 6 6 C 1.51835 * 107.32032 * 240.99488 * 4 2 1 7 7 C 1.54890 * 104.43420 * 336.21009 * 6 4 2 8 8 C 1.54286 * 109.98206 * 121.26941 * 2 1 3 9 9 H 1.09004 * 110.56511 * 23.94209 * 8 2 1 10 10 C 1.53004 * 110.56688 * 261.07652 * 8 2 1 11 11 C 1.50695 * 109.46843 * 174.99935 * 10 8 2 12 12 O 1.20827 * 120.00306 * 0.02562 * 11 10 8 13 13 O 1.34225 * 120.00096 * 180.02562 * 11 10 8 14 14 C 1.45201 * 117.00224 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46980 * 329.99812 * 14 13 11 16 16 C 1.50709 * 109.47119 * 209.99785 * 14 13 11 17 17 H 1.07997 * 120.00101 * 359.97438 * 16 14 13 18 18 C 1.37873 * 119.99730 * 179.97438 * 16 14 13 19 19 N 1.31519 * 119.99963 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 120.00492 * 359.97438 * 18 16 14 21 21 H 1.48499 * 109.47086 * 89.99641 * 20 18 16 22 22 H 1.48494 * 109.47311 * 210.00151 * 20 18 16 23 23 H 1.48509 * 109.46859 * 330.00067 * 20 18 16 24 24 C 1.53001 * 109.47186 * 90.00126 * 14 13 11 25 25 C 1.52993 * 117.49966 * 8.61781 * 24 14 13 26 26 C 1.52998 * 60.00152 * 252.51549 * 25 24 14 27 27 H 1.09001 * 109.47142 * 298.73481 * 1 2 3 28 28 H 1.09000 * 109.47172 * 58.72962 * 1 2 3 29 29 H 1.08994 * 109.47656 * 178.72893 * 1 2 3 30 30 H 1.08994 * 110.44499 * 94.95020 * 6 4 2 31 31 H 1.08999 * 110.44165 * 217.35247 * 6 4 2 32 32 H 1.09004 * 110.83492 * 279.42060 * 7 6 4 33 33 H 1.09003 * 110.83711 * 155.83363 * 7 6 4 34 34 H 1.08998 * 109.47021 * 294.99881 * 10 8 2 35 35 H 1.09003 * 109.46921 * 55.00084 * 10 8 2 36 36 H 0.96999 * 120.00438 * 179.97438 * 19 18 16 37 37 H 1.08998 * 115.54946 * 154.33054 * 24 14 13 38 38 H 1.09002 * 117.49958 * 0.02562 * 25 24 14 39 39 H 1.09006 * 117.50114 * 145.02383 * 25 24 14 40 40 H 1.09001 * 117.49753 * 252.50701 * 26 25 24 41 41 H 1.09003 * 117.51939 * 107.48259 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9022 1.0244 0.0000 4 6 2.0484 -0.7393 -1.2159 5 8 1.8504 -0.4453 -2.3703 6 6 2.8635 -1.9181 -0.7146 7 6 3.3056 -1.5036 0.7108 8 6 2.0572 -0.7526 1.2394 9 1 1.3115 -1.4589 1.6044 10 6 2.4497 0.2342 2.3408 11 6 2.8439 -0.5271 3.5801 12 8 2.8145 -1.7350 3.5821 13 8 3.2278 0.1366 4.6818 14 6 3.5941 -0.6615 5.8382 15 1 3.0271 -1.5925 5.8314 16 6 3.2839 0.1065 7.0973 17 1 2.8549 1.0956 7.0346 18 6 3.5479 -0.4537 8.3291 19 7 3.2768 0.2162 9.4279 20 14 4.2893 -2.1648 8.4375 21 1 5.7708 -2.0629 8.4434 22 1 3.8335 -2.8235 9.6879 23 1 3.8531 -2.9684 7.2673 24 6 5.0907 -0.9754 5.7879 25 6 5.9259 -0.2655 4.7206 26 6 5.6086 -1.7554 4.5779 27 1 -0.3633 0.4941 0.9011 28 1 -0.3633 0.5334 -0.8784 29 1 -0.3634 -1.0273 -0.0228 30 1 2.2486 -2.8173 -0.6761 31 1 3.7323 -2.0791 -1.3529 32 1 4.1693 -0.8398 0.6711 33 1 3.5175 -2.3812 1.3216 34 1 3.2909 0.8396 2.0033 35 1 1.6029 0.8824 2.5665 36 1 3.4621 -0.1780 10.2945 37 1 5.5631 -1.1685 6.7510 38 1 5.4093 0.4254 4.0544 39 1 6.9482 0.0086 4.9814 40 1 6.4221 -2.4615 4.7448 41 1 4.8831 -2.0453 3.8178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350300087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:21 Heat of formation + Delta-G solvation = -129.786475 kcal Electronic energy + Delta-G solvation = -22599.779199 eV Core-core repulsion = 19251.502753 eV Total energy + Delta-G solvation = -3348.276446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74268 -40.87269 -38.69372 -37.55534 -36.51827 -34.88578 -32.47882 -32.02873 -30.55926 -26.45474 -25.58304 -24.75694 -23.30430 -22.74629 -21.56703 -20.79921 -20.09232 -19.03333 -18.28522 -17.81460 -17.54483 -16.94342 -16.71077 -16.14490 -15.59878 -15.49409 -15.10964 -14.84600 -14.64089 -14.51198 -14.05217 -13.69233 -13.62763 -13.31645 -13.25010 -13.12052 -12.76083 -12.67371 -12.39162 -12.31109 -12.11288 -11.97699 -11.88375 -11.66150 -11.57033 -11.39909 -11.30302 -10.97684 -10.73961 -10.60549 -10.36278 -8.42799 -6.50368 0.91256 1.23470 1.31595 1.40586 1.43050 2.00934 2.21636 2.85953 3.01946 3.11684 3.46929 3.64454 3.75488 3.92075 4.02122 4.05357 4.15952 4.20845 4.23842 4.34676 4.44912 4.49778 4.53108 4.65712 4.75808 4.78661 4.86960 4.89167 4.95845 5.00202 5.04898 5.06523 5.15147 5.23619 5.27075 5.29693 5.40204 5.41609 5.76395 6.21158 6.48185 6.54056 6.99957 7.16288 8.72923 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.004295 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.075353 B = 6518.362847 C = 6911.213185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.143 4.143 3 H 0.122 0.878 4 C 0.378 3.622 5 O -0.484 6.484 6 C -0.177 4.177 7 C -0.115 4.115 8 C -0.068 4.068 9 H 0.087 0.913 10 C -0.103 4.103 11 C 0.446 3.554 12 O -0.534 6.534 13 O -0.354 6.354 14 C 0.235 3.765 15 H 0.032 0.968 16 C -0.532 4.532 17 H 0.046 0.954 18 C 0.031 3.969 19 N -0.932 5.932 20 Si 0.936 3.064 21 H -0.256 1.256 22 H -0.286 1.286 23 H -0.252 1.252 24 C -0.203 4.203 25 C -0.153 4.153 26 C -0.184 4.184 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.274 0.726 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -2.981 -18.782 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 H 0.140 0.860 4 C 0.256 3.744 5 O -0.359 6.359 6 C -0.214 4.214 7 C -0.153 4.153 8 C -0.087 4.087 9 H 0.106 0.894 10 C -0.140 4.140 11 C 0.291 3.709 12 O -0.424 6.424 13 O -0.270 6.270 14 C 0.180 3.820 15 H 0.049 0.951 16 C -0.570 4.570 17 H 0.065 0.935 18 C -0.168 4.168 19 N -0.570 5.570 20 Si 0.761 3.239 21 H -0.181 1.181 22 H -0.212 1.212 23 H -0.176 1.176 24 C -0.221 4.221 25 C -0.190 4.190 26 C -0.221 4.221 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.494 -3.171 -19.148 19.415 hybrid contribution 0.182 -0.631 1.036 1.227 sum 0.677 -3.802 -18.112 18.519 Atomic orbital electron populations 1.21717 0.91822 1.02832 1.03361 1.22290 0.98519 1.02031 0.93291 0.86042 1.25269 0.75331 0.85212 0.88583 1.90401 1.53433 1.68922 1.23144 1.22910 1.01721 0.98725 0.98059 1.22547 0.97283 1.01328 0.94115 1.21759 0.98631 0.96146 0.92116 0.89419 1.21591 1.05644 0.98683 0.88049 1.24485 0.72950 0.87618 0.85803 1.90554 1.50940 1.16720 1.84214 1.86509 1.75735 1.42634 1.22166 1.19928 0.90283 0.90682 0.81104 0.95078 1.20949 1.42985 1.03637 0.89403 0.93539 1.25518 0.95209 1.01479 0.94616 1.69967 1.48718 1.39832 0.98512 0.86030 0.79668 0.80017 0.78175 1.18144 1.21208 1.17576 1.23155 0.96679 1.07601 0.94710 1.22881 1.00391 0.94743 1.00944 1.23291 1.03670 0.94865 1.00276 0.90218 0.92041 0.92203 0.86792 0.88114 0.89888 0.90465 0.85403 0.85951 0.91711 0.88921 0.88280 0.87550 0.87770 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.08 71.98 0.65 -1.35 16 2 C -0.14 -2.13 3.01 -10.87 -0.03 -2.16 16 3 H 0.12 1.50 7.83 -2.39 -0.02 1.48 16 4 C 0.38 6.95 7.18 29.70 0.21 7.16 16 5 O -0.48 -12.25 17.99 -1.45 -0.03 -12.28 16 6 C -0.18 -2.64 6.72 30.86 0.21 -2.43 16 7 C -0.12 -1.95 5.80 31.92 0.19 -1.76 16 8 C -0.07 -1.19 2.00 -9.68 -0.02 -1.20 16 9 H 0.09 1.74 7.61 -2.38 -0.02 1.72 16 10 C -0.10 -2.07 5.16 29.85 0.15 -1.91 16 11 C 0.45 14.60 6.72 71.23 0.48 15.08 16 12 O -0.53 -19.44 11.84 21.96 0.26 -19.18 16 13 O -0.35 -14.67 8.39 -51.37 -0.43 -15.10 16 14 C 0.23 11.28 2.00 29.85 0.06 11.34 16 15 H 0.03 1.61 6.21 -2.39 -0.01 1.60 16 16 C -0.53 -30.56 9.48 25.60 0.24 -30.32 16 17 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 18 C 0.03 1.79 5.43 84.65 0.46 2.25 16 19 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 20 Si 0.94 43.86 24.48 68.60 1.68 45.53 16 21 H -0.26 -11.18 6.72 99.48 0.67 -10.51 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.25 -11.51 6.53 99.48 0.65 -10.86 16 24 C -0.20 -8.60 4.45 -10.80 -0.05 -8.65 16 25 C -0.15 -5.14 9.79 30.59 0.30 -4.84 16 26 C -0.18 -6.25 9.85 30.59 0.30 -5.95 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.25 7.96 -2.38 -0.02 1.24 16 33 H 0.08 1.59 7.37 -2.39 -0.02 1.57 16 34 H 0.13 1.99 8.01 -2.39 -0.02 1.97 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.09 4.17 4.41 -2.39 -0.01 4.16 16 38 H 0.10 3.19 6.90 -2.39 -0.02 3.17 16 39 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 40 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.10 3.50 5.37 -2.39 -0.01 3.48 16 Total: -1.00 -69.98 326.87 5.87 -64.12 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.93 Total: 17.98 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.16 Total: -24.75 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.30 Total: -56.32 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.20 Total: -46.56 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.68 Total: 45.53 kcal Total: -69.98 5.87 -64.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.671 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds