Wall clock time and date at job start Tue Mar 31 2020 01:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 120.00172 * 2 1 4 4 C 1.50701 * 119.99975 * 179.97438 * 2 1 3 5 5 H 1.09008 * 109.98767 * 348.51014 * 4 2 1 6 6 O 1.43742 * 109.87810 * 227.42593 * 4 2 1 7 7 C 1.44386 * 106.97199 * 214.05827 * 6 4 2 8 8 C 1.54994 * 103.48725 * 40.06422 * 7 6 4 9 9 C 1.54099 * 109.87784 * 109.59221 * 4 2 1 10 10 H 1.09000 * 110.60049 * 240.18540 * 9 4 2 11 11 C 1.50700 * 110.48834 * 2.77791 * 9 4 2 12 12 O 1.20822 * 120.00311 * 272.99427 * 11 9 4 13 13 O 1.34227 * 119.99903 * 92.99642 * 11 9 4 14 14 C 1.45200 * 117.00336 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.46760 * 29.99917 * 14 13 11 16 16 C 1.50702 * 109.47269 * 149.99579 * 14 13 11 17 17 H 1.08001 * 119.99584 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00038 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99716 * 0.02562 * 18 16 14 20 20 Si 1.86791 * 120.00238 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47526 * 89.99675 * 20 18 16 22 22 H 1.48501 * 109.47269 * 210.00154 * 20 18 16 23 23 H 1.48503 * 109.46844 * 330.00028 * 20 18 16 24 24 C 1.52994 * 109.47152 * 270.00054 * 14 13 11 25 25 C 1.53003 * 117.49896 * 128.61632 * 24 14 13 26 26 C 1.52995 * 59.99946 * 252.51210 * 25 24 14 27 27 H 1.07998 * 119.99744 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99712 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47184 * 275.31646 * 3 2 1 30 30 H 1.09002 * 109.47488 * 35.31747 * 3 2 1 31 31 H 1.09001 * 109.47487 * 155.31738 * 3 2 1 32 32 H 1.08994 * 110.62046 * 281.56032 * 7 6 4 33 33 H 1.09002 * 110.74718 * 158.62564 * 7 6 4 34 34 H 1.09002 * 110.90346 * 204.77177 * 8 7 6 35 35 H 1.08994 * 110.90989 * 81.17379 * 8 7 6 36 36 H 0.97002 * 120.00473 * 0.02562 * 19 18 16 37 37 H 1.09000 * 115.55363 * 274.32645 * 24 14 13 38 38 H 1.08998 * 117.49740 * 0.02562 * 25 24 14 39 39 H 1.08997 * 117.49704 * 145.01825 * 25 24 14 40 40 H 1.09008 * 117.49951 * 252.50841 * 26 25 24 41 41 H 1.09004 * 117.50054 * 107.49331 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3805 -2.1297 0.2050 6 8 3.1000 -1.2707 0.9960 7 6 4.2071 -2.0396 0.4785 8 6 4.2500 -1.6477 -1.0204 9 6 2.7464 -1.5165 -1.3646 10 1 2.3825 -2.4283 -1.8383 11 6 2.5122 -0.3281 -2.2612 12 8 1.5189 -0.2752 -2.9471 13 8 3.4070 0.6717 -2.2978 14 6 3.1167 1.7841 -3.1846 15 1 2.0371 1.9039 -3.2757 16 6 3.7163 3.0463 -2.6201 17 1 4.2613 3.0153 -1.6882 18 6 3.5689 4.2405 -3.2932 19 7 2.9047 4.2782 -4.4277 20 14 4.3126 5.8048 -2.5939 21 1 5.6949 5.9698 -3.1107 22 1 3.4886 6.9705 -3.0031 23 1 4.3454 5.7176 -1.1118 24 6 3.7174 1.5069 -4.5641 25 6 2.7960 1.6490 -5.7773 26 6 3.2336 0.2603 -5.3076 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 2.1628 1.6673 -1.0233 30 1 1.5191 2.0390 0.5941 31 1 3.0539 1.1528 0.4291 32 1 4.0188 -3.1072 0.5910 33 1 5.1365 -1.7605 0.9750 34 1 4.7180 -2.4328 -1.6144 35 1 4.7652 -0.6973 -1.1595 36 1 2.5181 3.4660 -4.7907 37 1 4.7616 1.7935 -4.6885 38 1 1.7621 1.9405 -5.5927 39 1 3.2340 2.0294 -6.7001 40 1 3.9596 -0.2731 -5.9214 41 1 2.4874 -0.3624 -4.8139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350300994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:33 Heat of formation + Delta-G solvation = -86.716195 kcal Electronic energy + Delta-G solvation = -23874.162847 eV Core-core repulsion = 20527.754069 eV Total energy + Delta-G solvation = -3346.408779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68154 -38.90283 -36.77776 -35.15012 -34.79274 -32.76756 -32.31127 -28.80069 -27.45704 -26.86071 -23.92005 -23.06028 -22.29284 -21.68664 -20.62343 -19.45110 -18.51968 -17.29091 -16.92426 -16.50966 -15.88685 -15.70697 -15.21891 -14.55855 -14.28374 -13.87193 -13.78231 -13.31569 -13.00467 -12.67881 -12.49406 -12.22270 -12.06209 -11.86496 -11.49359 -11.40517 -11.19579 -11.05503 -10.93195 -10.79104 -10.66265 -10.61330 -10.17485 -9.78732 -9.70597 -9.63776 -9.55450 -9.26784 -8.77691 -8.59981 -8.40846 -6.44113 -4.24027 2.33432 2.81170 3.36551 3.40682 3.45184 3.59107 3.98448 4.43160 4.46933 4.62766 4.76673 4.89392 5.00873 5.12594 5.21048 5.23023 5.34853 5.61079 5.66847 5.67160 5.70234 5.77960 5.85412 6.00086 6.02243 6.22171 6.24077 6.30214 6.34074 6.41912 6.61866 6.67043 6.79016 6.85582 6.92087 6.98473 7.11658 7.15943 7.45347 7.91996 8.27925 8.61756 8.78156 9.48846 10.93380 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.006925 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.751552 B = 4042.211677 C = 4611.967690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 C -0.131 4.131 4 C 0.132 3.868 5 H 0.082 0.918 6 O -0.360 6.360 7 C 0.046 3.954 8 C -0.152 4.152 9 C -0.116 4.116 10 H 0.115 0.885 11 C 0.473 3.527 12 O -0.517 6.517 13 O -0.336 6.336 14 C 0.241 3.759 15 H 0.036 0.964 16 C -0.604 4.604 17 H 0.065 0.935 18 C 0.030 3.970 19 N -0.907 5.907 20 Si 1.076 2.924 21 H -0.287 1.287 22 H -0.283 1.283 23 H -0.286 1.286 24 C -0.140 4.140 25 C -0.156 4.156 26 C -0.212 4.212 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.284 0.716 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 -11.685 6.424 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.130 4.130 3 C -0.187 4.187 4 C 0.074 3.926 5 H 0.099 0.901 6 O -0.279 6.279 7 C -0.030 4.030 8 C -0.190 4.190 9 C -0.135 4.135 10 H 0.133 0.867 11 C 0.316 3.684 12 O -0.407 6.407 13 O -0.252 6.252 14 C 0.188 3.812 15 H 0.054 0.946 16 C -0.642 4.642 17 H 0.083 0.917 18 C -0.177 4.177 19 N -0.543 5.543 20 Si 0.903 3.097 21 H -0.213 1.213 22 H -0.209 1.209 23 H -0.212 1.212 24 C -0.159 4.159 25 C -0.193 4.193 26 C -0.249 4.249 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.908 -9.881 6.118 11.657 hybrid contribution -0.268 -1.855 -0.258 1.892 sum 0.640 -11.736 5.860 13.133 Atomic orbital electron populations 1.23595 0.94893 1.01881 1.01121 1.21785 0.95341 0.95505 1.00397 1.21166 0.99956 0.92596 1.05006 1.21601 0.89631 0.95975 0.85369 0.90071 1.88952 1.25877 1.73167 1.39925 1.23579 0.90840 0.95364 0.93244 1.23316 0.94243 1.04904 0.96508 1.22600 0.98499 0.96344 0.96078 0.86671 1.22645 0.81466 0.84182 0.80079 1.90583 1.29011 1.79254 1.41898 1.86525 1.47757 1.29464 1.61449 1.20249 0.96428 0.81352 0.83190 0.94592 1.21803 1.40222 0.91205 1.10935 0.91662 1.25771 0.95643 1.01443 0.94830 1.70720 1.31332 1.34026 1.18217 0.83451 0.76111 0.74873 0.75263 1.21313 1.20893 1.21188 1.23119 0.99521 0.99060 0.94231 1.22674 1.00094 0.98333 0.98218 1.23229 1.04258 0.91834 1.05573 0.88715 0.87857 0.88287 0.92460 0.91195 0.92180 0.88438 0.89684 0.87625 0.90128 0.88451 0.89215 0.89640 0.90442 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 13.93 29.01 0.40 -2.39 16 2 C -0.13 -2.23 3.80 -101.07 -0.38 -2.61 16 3 C -0.13 -2.53 8.64 36.00 0.31 -2.22 16 4 C 0.13 1.97 3.63 -27.31 -0.10 1.87 16 5 H 0.08 1.04 7.86 -51.92 -0.41 0.63 16 6 O -0.36 -5.37 10.46 -35.23 -0.37 -5.74 16 7 C 0.05 0.53 7.72 38.21 0.29 0.82 16 8 C -0.15 -1.96 6.65 -24.72 -0.16 -2.12 16 9 C -0.12 -1.74 3.51 -90.24 -0.32 -2.06 16 10 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 11 C 0.47 9.36 3.58 36.01 0.13 9.49 16 12 O -0.52 -11.51 14.00 -18.75 -0.26 -11.77 16 13 O -0.34 -7.42 6.50 -39.25 -0.26 -7.67 16 14 C 0.24 6.04 1.00 -27.88 -0.03 6.01 16 15 H 0.04 1.02 6.74 -51.93 -0.35 0.67 16 16 C -0.60 -16.30 8.26 -34.44 -0.28 -16.59 16 17 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.03 0.81 5.30 -17.82 -0.09 0.72 16 19 N -0.91 -26.11 13.38 55.43 0.74 -25.37 16 20 Si 1.08 24.39 29.90 -169.99 -5.08 19.31 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.14 -3.30 4.47 -90.62 -0.41 -3.71 16 25 C -0.16 -3.44 8.14 -26.73 -0.22 -3.65 16 26 C -0.21 -4.36 9.80 -26.73 -0.26 -4.62 16 27 H 0.09 1.27 7.89 -52.49 -0.41 0.85 16 28 H 0.10 1.59 8.05 -52.49 -0.42 1.16 16 29 H 0.10 2.24 3.92 -51.93 -0.20 2.04 16 30 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.62 6.73 -51.93 -0.35 1.27 16 36 H 0.28 7.98 3.57 -40.82 -0.15 7.83 16 37 H 0.10 2.38 8.11 -51.93 -0.42 1.96 16 38 H 0.09 2.08 7.43 -51.93 -0.39 1.70 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 41 H 0.10 2.06 5.37 -51.93 -0.28 1.78 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -30.42 321.90 -7.42 -37.85 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.93 Total: 9.60 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -1.12 Total: -21.06 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.74 Total: -25.37 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.89 Total: -25.18 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.42 -7.42 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.867 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds