Wall clock time and date at job start Tue Mar 31 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 120.00172 * 2 1 4 4 C 1.50701 * 119.99975 * 179.97438 * 2 1 3 5 5 H 1.09008 * 109.98767 * 348.51014 * 4 2 1 6 6 O 1.43742 * 109.87810 * 227.42593 * 4 2 1 7 7 C 1.44386 * 106.97199 * 214.05827 * 6 4 2 8 8 C 1.54994 * 103.48725 * 40.06422 * 7 6 4 9 9 C 1.54099 * 109.87784 * 109.59221 * 4 2 1 10 10 H 1.09000 * 110.60049 * 240.18540 * 9 4 2 11 11 C 1.50700 * 110.48834 * 2.77791 * 9 4 2 12 12 O 1.20822 * 120.00311 * 272.99427 * 11 9 4 13 13 O 1.34227 * 119.99903 * 92.99642 * 11 9 4 14 14 C 1.45200 * 117.00336 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.46760 * 29.99917 * 14 13 11 16 16 C 1.50702 * 109.47269 * 149.99579 * 14 13 11 17 17 H 1.08001 * 119.99584 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00038 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99716 * 0.02562 * 18 16 14 20 20 Si 1.86791 * 120.00238 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47526 * 89.99675 * 20 18 16 22 22 H 1.48501 * 109.47269 * 210.00154 * 20 18 16 23 23 H 1.48503 * 109.46844 * 330.00028 * 20 18 16 24 24 C 1.52994 * 109.47152 * 270.00054 * 14 13 11 25 25 C 1.53003 * 117.49896 * 128.61632 * 24 14 13 26 26 C 1.52995 * 59.99946 * 252.51210 * 25 24 14 27 27 H 1.07998 * 119.99744 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99712 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47184 * 275.31646 * 3 2 1 30 30 H 1.09002 * 109.47488 * 35.31747 * 3 2 1 31 31 H 1.09001 * 109.47487 * 155.31738 * 3 2 1 32 32 H 1.08994 * 110.62046 * 281.56032 * 7 6 4 33 33 H 1.09002 * 110.74718 * 158.62564 * 7 6 4 34 34 H 1.09002 * 110.90346 * 204.77177 * 8 7 6 35 35 H 1.08994 * 110.90989 * 81.17379 * 8 7 6 36 36 H 0.97002 * 120.00473 * 0.02562 * 19 18 16 37 37 H 1.09000 * 115.55363 * 274.32645 * 24 14 13 38 38 H 1.08998 * 117.49740 * 0.02562 * 25 24 14 39 39 H 1.08997 * 117.49704 * 145.01825 * 25 24 14 40 40 H 1.09008 * 117.49951 * 252.50841 * 26 25 24 41 41 H 1.09004 * 117.50054 * 107.49331 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3805 -2.1297 0.2050 6 8 3.1000 -1.2707 0.9960 7 6 4.2071 -2.0396 0.4785 8 6 4.2500 -1.6477 -1.0204 9 6 2.7464 -1.5165 -1.3646 10 1 2.3825 -2.4283 -1.8383 11 6 2.5122 -0.3281 -2.2612 12 8 1.5189 -0.2752 -2.9471 13 8 3.4070 0.6717 -2.2978 14 6 3.1167 1.7841 -3.1846 15 1 2.0371 1.9039 -3.2757 16 6 3.7163 3.0463 -2.6201 17 1 4.2613 3.0153 -1.6882 18 6 3.5689 4.2405 -3.2932 19 7 2.9047 4.2782 -4.4277 20 14 4.3126 5.8048 -2.5939 21 1 5.6949 5.9698 -3.1107 22 1 3.4886 6.9705 -3.0031 23 1 4.3454 5.7176 -1.1118 24 6 3.7174 1.5069 -4.5641 25 6 2.7960 1.6490 -5.7773 26 6 3.2336 0.2603 -5.3076 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 2.1628 1.6673 -1.0233 30 1 1.5191 2.0390 0.5941 31 1 3.0539 1.1528 0.4291 32 1 4.0188 -3.1072 0.5910 33 1 5.1365 -1.7605 0.9750 34 1 4.7180 -2.4328 -1.6144 35 1 4.7652 -0.6973 -1.1595 36 1 2.5181 3.4660 -4.7907 37 1 4.7616 1.7935 -4.6885 38 1 1.7621 1.9405 -5.5927 39 1 3.2340 2.0294 -6.7001 40 1 3.9596 -0.2731 -5.9214 41 1 2.4874 -0.3624 -4.8139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350300994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:31 Heat of formation + Delta-G solvation = -103.493284 kcal Electronic energy + Delta-G solvation = -23874.890356 eV Core-core repulsion = 20527.754069 eV Total energy + Delta-G solvation = -3347.136288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.12032 -40.26205 -38.52639 -36.88189 -36.06637 -34.79070 -33.49532 -29.98217 -29.32923 -28.30271 -25.56457 -24.73524 -23.50012 -23.29230 -22.16272 -21.21299 -19.89149 -19.22775 -18.37129 -17.93058 -17.30323 -17.02626 -16.56335 -16.06459 -15.82557 -15.61309 -15.06018 -14.90851 -14.52012 -14.37048 -14.16842 -13.83639 -13.41151 -13.27819 -13.04091 -12.79142 -12.62522 -12.58335 -12.52495 -12.36900 -12.20164 -11.95104 -11.84699 -11.53552 -11.44957 -11.23766 -11.06930 -10.73897 -10.64472 -10.43307 -10.08622 -8.62104 -6.42807 1.04325 1.30274 1.52902 1.61124 1.79021 1.89038 2.55508 2.90450 2.95879 3.12388 3.37545 3.50773 3.69513 3.87289 3.91112 4.00405 4.03926 4.11420 4.14156 4.20692 4.35938 4.55360 4.57230 4.60687 4.67483 4.78279 4.82222 4.84852 4.85860 4.87723 5.01743 5.13109 5.17499 5.20077 5.25547 5.54463 5.60036 5.72119 5.89759 5.96411 6.19346 6.55632 6.96477 7.38348 8.77280 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.006925 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.751552 B = 4042.211677 C = 4611.967690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C -0.125 4.125 4 C 0.136 3.864 5 H 0.114 0.886 6 O -0.382 6.382 7 C 0.047 3.953 8 C -0.150 4.150 9 C -0.113 4.113 10 H 0.147 0.853 11 C 0.469 3.531 12 O -0.547 6.547 13 O -0.340 6.340 14 C 0.251 3.749 15 H -0.004 1.004 16 C -0.614 4.614 17 H 0.056 0.944 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 1.118 2.882 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.179 4.179 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.280 0.720 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -14.012 7.117 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.181 4.181 4 C 0.078 3.922 5 H 0.132 0.868 6 O -0.302 6.302 7 C -0.028 4.028 8 C -0.187 4.187 9 C -0.132 4.132 10 H 0.165 0.835 11 C 0.314 3.686 12 O -0.438 6.438 13 O -0.256 6.256 14 C 0.198 3.802 15 H 0.013 0.987 16 C -0.651 4.651 17 H 0.074 0.926 18 C -0.216 4.216 19 N -0.570 5.570 20 Si 0.939 3.061 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.180 4.180 25 C -0.194 4.194 26 C -0.216 4.216 27 H 0.143 0.857 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.601 -12.241 6.822 14.104 hybrid contribution -0.542 -1.166 -0.427 1.355 sum 1.059 -13.407 6.395 14.892 Atomic orbital electron populations 1.23858 0.94629 1.03096 0.98960 1.21903 0.96037 0.95609 1.02229 1.20990 1.00172 0.94460 1.02499 1.21686 0.90012 0.95369 0.85085 0.86825 1.88932 1.26819 1.74254 1.40152 1.23824 0.90406 0.96903 0.91709 1.23327 0.92509 1.04449 0.98461 1.22829 1.00425 0.94631 0.95362 0.83483 1.23651 0.80396 0.84457 0.80054 1.90561 1.29978 1.79878 1.43419 1.86525 1.48599 1.29502 1.60990 1.19765 0.93719 0.82193 0.84567 0.98651 1.22038 1.39801 0.92661 1.10626 0.92577 1.27115 0.95371 1.04509 0.94567 1.70796 1.32845 1.34025 1.19351 0.82924 0.76147 0.71544 0.75471 1.19568 1.20853 1.19812 1.22875 0.98933 1.02251 0.93891 1.22634 0.98762 0.99910 0.98121 1.23237 1.03741 0.90705 1.03875 0.85690 0.88515 0.92010 0.92408 0.91964 0.88637 0.87272 0.86532 0.90842 0.90681 0.89566 0.91238 0.88139 0.87037 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 13.93 67.77 0.94 -4.15 16 2 C -0.16 -5.30 3.80 -16.50 -0.06 -5.37 16 3 C -0.12 -4.99 8.64 71.23 0.62 -4.38 16 4 C 0.14 3.72 3.63 30.22 0.11 3.83 16 5 H 0.11 2.40 7.86 -2.38 -0.02 2.38 16 6 O -0.38 -10.49 10.46 -148.98 -1.56 -12.05 16 7 C 0.05 0.91 7.72 72.66 0.56 1.47 16 8 C -0.15 -3.48 6.65 31.89 0.21 -3.27 16 9 C -0.11 -3.14 3.51 -10.55 -0.04 -3.18 16 10 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 11 C 0.47 18.54 3.58 71.24 0.25 18.79 16 12 O -0.55 -24.59 14.00 21.98 0.31 -24.28 16 13 O -0.34 -15.48 6.50 -51.38 -0.33 -15.81 16 14 C 0.25 13.15 1.00 29.85 0.03 13.18 16 15 H 0.00 -0.25 6.74 -2.39 -0.02 -0.26 16 16 C -0.61 -34.50 8.26 25.60 0.21 -34.29 16 17 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 18 C -0.01 -0.81 5.30 84.65 0.45 -0.36 16 19 N -0.93 -55.36 13.38 21.45 0.29 -55.07 16 20 Si 1.12 49.77 29.90 68.60 2.05 51.82 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 C -0.16 -7.72 4.47 -10.80 -0.05 -7.77 16 25 C -0.16 -7.02 8.14 30.59 0.25 -6.77 16 26 C -0.18 -7.20 9.80 30.59 0.30 -6.90 16 27 H 0.13 2.98 7.89 -2.91 -0.02 2.96 16 28 H 0.10 2.98 8.05 -2.91 -0.02 2.95 16 29 H 0.06 2.95 3.92 -2.38 -0.01 2.94 16 30 H 0.06 2.18 8.10 -2.39 -0.02 2.17 16 31 H 0.06 2.49 7.47 -2.39 -0.02 2.48 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.21 6.73 -2.39 -0.02 2.19 16 36 H 0.28 16.35 3.57 -92.71 -0.33 16.02 16 37 H 0.09 4.31 8.11 -2.39 -0.02 4.29 16 38 H 0.07 3.37 7.43 -2.39 -0.02 3.36 16 39 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 40 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 41 H 0.09 3.80 5.37 -2.38 -0.01 3.79 16 Total: -1.00 -69.34 321.90 6.00 -63.35 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 1.46 Total: 31.20 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 3.79 Total: -39.16 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.29 Total: -55.07 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -1.59 Total: -52.14 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Total: -69.34 6.00 -63.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.147 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds