Wall clock time and date at job start Tue Mar 31 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99840 * 2 1 4 4 C 1.50703 * 120.00348 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.98888 * 350.79582 * 4 2 1 6 6 O 1.43747 * 109.87711 * 229.71125 * 4 2 1 7 7 C 1.44381 * 106.97510 * 214.06169 * 6 4 2 8 8 C 1.55000 * 103.48867 * 40.06056 * 7 6 4 9 9 C 1.54097 * 109.87910 * 111.88216 * 4 2 1 10 10 H 1.09006 * 110.59941 * 240.18875 * 9 4 2 11 11 C 1.50697 * 110.49076 * 2.77247 * 9 4 2 12 12 O 1.20826 * 119.99698 * 105.00472 * 11 9 4 13 13 O 1.34224 * 120.00419 * 285.00981 * 11 9 4 14 14 C 1.45206 * 117.00122 * 184.46863 * 13 11 9 15 15 H 1.08994 * 109.47280 * 336.58181 * 14 13 11 16 16 C 1.50703 * 109.47070 * 216.58041 * 14 13 11 17 17 H 1.07999 * 120.00265 * 0.02562 * 16 14 13 18 18 C 1.37870 * 119.99841 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00186 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99985 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47053 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47157 * 300.00439 * 20 18 16 23 23 H 1.48500 * 109.46867 * 60.00479 * 20 18 16 24 24 C 1.52992 * 109.46981 * 96.58420 * 14 13 11 25 25 C 1.53002 * 117.50311 * 6.64409 * 24 14 13 26 26 C 1.53003 * 117.49963 * 297.98582 * 24 14 13 27 27 H 1.08002 * 119.99657 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.00294 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47089 * 275.35353 * 3 2 1 30 30 H 1.09004 * 109.47118 * 35.35374 * 3 2 1 31 31 H 1.09002 * 109.47405 * 155.35189 * 3 2 1 32 32 H 1.09003 * 110.61975 * 281.56422 * 7 6 4 33 33 H 1.08996 * 110.75744 * 158.62498 * 7 6 4 34 34 H 1.09007 * 110.90583 * 204.77810 * 8 7 6 35 35 H 1.08993 * 110.90572 * 81.17854 * 8 7 6 36 36 H 0.97002 * 120.00212 * 359.97438 * 19 18 16 37 37 H 1.09007 * 115.55324 * 152.31785 * 24 14 13 38 38 H 1.09008 * 117.49369 * 0.02562 * 25 24 14 39 39 H 1.09002 * 117.50175 * 145.02112 * 25 24 14 40 40 H 1.08998 * 117.50285 * 214.98045 * 26 24 14 41 41 H 1.09002 * 117.49906 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 1 1.3742 -2.1335 0.1629 6 8 3.0650 -1.2917 1.0306 7 6 4.1897 -2.0498 0.5358 8 6 4.2842 -1.6269 -0.9524 9 6 2.7933 -1.4882 -1.3454 10 1 2.4463 -2.3897 -1.8504 11 6 2.5897 -0.2814 -2.2247 12 8 3.4876 0.5123 -2.3786 13 8 1.4109 -0.0881 -2.8368 14 6 1.3175 1.0399 -3.7464 15 1 2.0717 1.7818 -3.4839 16 6 -0.0530 1.6579 -3.6413 17 1 -0.7808 1.2446 -2.9588 18 6 -0.3772 2.7516 -4.4156 19 7 0.5093 3.2553 -5.2463 20 14 -2.0762 3.5172 -4.2858 21 1 -2.1716 4.6709 -5.2160 22 1 -3.1033 2.5064 -4.6445 23 1 -2.3044 3.9826 -2.8942 24 6 1.5517 0.5597 -5.1800 25 6 1.6708 -0.9483 -5.4094 26 6 2.9130 -0.0589 -5.5043 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 2.1621 1.6677 -1.0232 30 1 1.5192 2.0389 0.5947 31 1 3.0540 1.1529 0.4286 32 1 3.9981 -3.1196 0.6193 33 1 5.1013 -1.7815 1.0697 34 1 4.7728 -2.3996 -1.5461 35 1 4.8035 -0.6740 -1.0537 36 1 1.3914 2.8575 -5.3140 37 1 1.0692 1.1506 -5.9585 38 1 1.5819 -1.5984 -4.5389 39 1 1.2669 -1.3495 -6.3389 40 1 3.3259 0.1246 -6.4962 41 1 3.6419 -0.1234 -4.6963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350300995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:35 Heat of formation + Delta-G solvation = -87.430000 kcal Electronic energy + Delta-G solvation = -23817.324122 eV Core-core repulsion = 20470.884390 eV Total energy + Delta-G solvation = -3346.439732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72198 -38.92947 -36.75728 -35.03303 -34.62796 -33.04436 -32.22430 -28.95975 -27.34940 -26.88749 -23.94900 -23.26316 -22.47626 -21.69099 -20.32793 -19.23989 -18.47653 -17.51620 -16.96583 -16.61827 -15.97262 -15.70844 -15.20502 -14.62946 -14.27794 -13.87243 -13.78984 -13.35218 -12.99483 -12.77791 -12.39020 -12.14868 -12.03610 -11.88687 -11.54176 -11.38946 -11.21852 -11.15412 -10.97369 -10.85025 -10.76601 -10.64941 -10.19285 -10.01916 -9.85558 -9.75971 -9.58688 -9.22346 -8.70059 -8.47890 -8.41687 -6.50273 -4.25842 2.44606 2.83041 3.35656 3.39203 3.44502 3.58839 3.96738 4.35500 4.42700 4.62695 4.75295 4.94094 5.01362 5.11286 5.19702 5.24624 5.35249 5.47474 5.59706 5.64657 5.70728 5.75647 5.80384 5.87602 6.04970 6.08548 6.19139 6.22683 6.25588 6.39860 6.51309 6.66255 6.75151 6.77655 6.89708 6.95099 7.15809 7.17209 7.47432 7.91057 8.24187 8.59266 8.71592 9.43750 10.86201 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.006826 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.545644 B = 4100.771182 C = 5003.791268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C -0.119 4.119 4 C 0.133 3.867 5 H 0.083 0.917 6 O -0.364 6.364 7 C 0.047 3.953 8 C -0.146 4.146 9 C -0.119 4.119 10 H 0.111 0.889 11 C 0.473 3.527 12 O -0.516 6.516 13 O -0.336 6.336 14 C 0.238 3.762 15 H 0.044 0.956 16 C -0.593 4.593 17 H 0.064 0.936 18 C 0.026 3.974 19 N -0.907 5.907 20 Si 1.074 2.926 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.144 4.144 25 C -0.180 4.180 26 C -0.204 4.204 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.276 0.724 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -10.774 7.989 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C -0.176 4.176 4 C 0.075 3.925 5 H 0.101 0.899 6 O -0.283 6.283 7 C -0.030 4.030 8 C -0.184 4.184 9 C -0.139 4.139 10 H 0.129 0.871 11 C 0.316 3.684 12 O -0.406 6.406 13 O -0.251 6.251 14 C 0.185 3.815 15 H 0.062 0.938 16 C -0.631 4.631 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.901 3.099 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.163 4.163 25 C -0.217 4.217 26 C -0.241 4.241 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.329 -9.169 7.524 12.320 hybrid contribution 1.070 -1.440 0.091 1.796 sum 4.399 -10.610 7.615 13.780 Atomic orbital electron populations 1.23616 0.94736 1.02141 0.98224 1.21460 0.95301 0.94567 1.02676 1.20919 0.99665 0.93748 1.03266 1.21605 0.89822 0.96335 0.84710 0.89923 1.88942 1.26908 1.73955 1.38451 1.23561 0.90378 0.95682 0.93366 1.23230 0.94173 1.04589 0.96400 1.22499 0.97973 0.97273 0.96114 0.87103 1.22637 0.81638 0.85898 0.78207 1.90578 1.43512 1.45139 1.61386 1.86532 1.32887 1.51219 1.54510 1.20170 0.99074 0.81172 0.81067 0.93802 1.21790 0.97694 1.15938 1.27690 0.91751 1.25827 1.05315 0.94157 0.92592 1.70796 1.06764 1.41841 1.34924 0.83466 0.73673 0.76320 0.76421 1.20598 1.21181 1.21187 1.23292 0.96945 0.94637 1.01394 1.22746 1.02217 0.94894 1.01839 1.23024 0.92156 1.07103 1.01853 0.88627 0.87561 0.90348 0.92123 0.92004 0.92026 0.88584 0.89664 0.88083 0.91222 0.85986 0.89477 0.90017 0.89949 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 13.86 29.02 0.40 -2.05 16 2 C -0.14 -2.39 3.49 -101.06 -0.35 -2.74 16 3 C -0.12 -2.21 8.76 36.01 0.32 -1.89 16 4 C 0.13 1.98 3.63 -27.31 -0.10 1.88 16 5 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 6 O -0.36 -5.31 10.55 -35.23 -0.37 -5.69 16 7 C 0.05 0.52 7.72 38.21 0.29 0.81 16 8 C -0.15 -1.85 6.59 -24.72 -0.16 -2.02 16 9 C -0.12 -1.79 3.55 -90.25 -0.32 -2.11 16 10 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 11 C 0.47 9.30 3.41 36.00 0.12 9.42 16 12 O -0.52 -11.31 12.04 -18.75 -0.23 -11.53 16 13 O -0.34 -7.45 7.46 -39.24 -0.29 -7.75 16 14 C 0.24 6.02 2.17 -27.89 -0.06 5.96 16 15 H 0.04 1.25 6.76 -51.93 -0.35 0.89 16 16 C -0.59 -16.14 8.90 -34.44 -0.31 -16.45 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.03 0.70 5.18 -17.82 -0.09 0.61 16 19 N -0.91 -26.26 12.85 55.43 0.71 -25.55 16 20 Si 1.07 24.30 29.90 -169.99 -5.08 19.21 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.14 -3.39 4.61 -90.62 -0.42 -3.81 16 25 C -0.18 -3.58 9.88 -26.69 -0.26 -3.85 16 26 C -0.20 -4.17 10.01 -26.69 -0.27 -4.44 16 27 H 0.10 1.35 7.87 -52.49 -0.41 0.94 16 28 H 0.11 1.77 8.05 -52.49 -0.42 1.35 16 29 H 0.08 1.72 5.89 -51.93 -0.31 1.41 16 30 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.06 1.11 7.55 -51.93 -0.39 0.71 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.10 1.50 6.79 -51.93 -0.35 1.15 16 36 H 0.28 8.00 5.75 -40.82 -0.23 7.76 16 37 H 0.12 3.15 6.23 -51.93 -0.32 2.83 16 38 H 0.09 1.69 7.01 -51.92 -0.36 1.33 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.09 1.80 6.45 -51.93 -0.33 1.47 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -30.31 326.83 -7.61 -37.92 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.06 Total: 9.14 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.21 Total: -20.68 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.71 Total: -25.55 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.89 Total: -24.97 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.31 -7.61 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.514 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds