Wall clock time and date at job start Tue Mar 31 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99840 * 2 1 4 4 C 1.50703 * 120.00348 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.98888 * 350.79582 * 4 2 1 6 6 O 1.43747 * 109.87711 * 229.71125 * 4 2 1 7 7 C 1.44381 * 106.97510 * 214.06169 * 6 4 2 8 8 C 1.55000 * 103.48867 * 40.06056 * 7 6 4 9 9 C 1.54097 * 109.87910 * 111.88216 * 4 2 1 10 10 H 1.09006 * 110.59941 * 240.18875 * 9 4 2 11 11 C 1.50697 * 110.49076 * 2.77247 * 9 4 2 12 12 O 1.20826 * 119.99698 * 105.00472 * 11 9 4 13 13 O 1.34224 * 120.00419 * 285.00981 * 11 9 4 14 14 C 1.45206 * 117.00122 * 184.46863 * 13 11 9 15 15 H 1.08994 * 109.47280 * 336.58181 * 14 13 11 16 16 C 1.50703 * 109.47070 * 216.58041 * 14 13 11 17 17 H 1.07999 * 120.00265 * 0.02562 * 16 14 13 18 18 C 1.37870 * 119.99841 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00186 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99985 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47053 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47157 * 300.00439 * 20 18 16 23 23 H 1.48500 * 109.46867 * 60.00479 * 20 18 16 24 24 C 1.52992 * 109.46981 * 96.58420 * 14 13 11 25 25 C 1.53002 * 117.50311 * 6.64409 * 24 14 13 26 26 C 1.53003 * 117.49963 * 297.98582 * 24 14 13 27 27 H 1.08002 * 119.99657 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.00294 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47089 * 275.35353 * 3 2 1 30 30 H 1.09004 * 109.47118 * 35.35374 * 3 2 1 31 31 H 1.09002 * 109.47405 * 155.35189 * 3 2 1 32 32 H 1.09003 * 110.61975 * 281.56422 * 7 6 4 33 33 H 1.08996 * 110.75744 * 158.62498 * 7 6 4 34 34 H 1.09007 * 110.90583 * 204.77810 * 8 7 6 35 35 H 1.08993 * 110.90572 * 81.17854 * 8 7 6 36 36 H 0.97002 * 120.00212 * 359.97438 * 19 18 16 37 37 H 1.09007 * 115.55324 * 152.31785 * 24 14 13 38 38 H 1.09008 * 117.49369 * 0.02562 * 25 24 14 39 39 H 1.09002 * 117.50175 * 145.02112 * 25 24 14 40 40 H 1.08998 * 117.50285 * 214.98045 * 26 24 14 41 41 H 1.09002 * 117.49906 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 1 1.3742 -2.1335 0.1629 6 8 3.0650 -1.2917 1.0306 7 6 4.1897 -2.0498 0.5358 8 6 4.2842 -1.6269 -0.9524 9 6 2.7933 -1.4882 -1.3454 10 1 2.4463 -2.3897 -1.8504 11 6 2.5897 -0.2814 -2.2247 12 8 3.4876 0.5123 -2.3786 13 8 1.4109 -0.0881 -2.8368 14 6 1.3175 1.0399 -3.7464 15 1 2.0717 1.7818 -3.4839 16 6 -0.0530 1.6579 -3.6413 17 1 -0.7808 1.2446 -2.9588 18 6 -0.3772 2.7516 -4.4156 19 7 0.5093 3.2553 -5.2463 20 14 -2.0762 3.5172 -4.2858 21 1 -2.1716 4.6709 -5.2160 22 1 -3.1033 2.5064 -4.6445 23 1 -2.3044 3.9826 -2.8942 24 6 1.5517 0.5597 -5.1800 25 6 1.6708 -0.9483 -5.4094 26 6 2.9130 -0.0589 -5.5043 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 2.1621 1.6677 -1.0232 30 1 1.5192 2.0389 0.5947 31 1 3.0540 1.1529 0.4286 32 1 3.9981 -3.1196 0.6193 33 1 5.1013 -1.7815 1.0697 34 1 4.7728 -2.3996 -1.5461 35 1 4.8035 -0.6740 -1.0537 36 1 1.3914 2.8575 -5.3140 37 1 1.0692 1.1506 -5.9585 38 1 1.5819 -1.5984 -4.5389 39 1 1.2669 -1.3495 -6.3389 40 1 3.3259 0.1246 -6.4962 41 1 3.6419 -0.1234 -4.6963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350300995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:35 Heat of formation + Delta-G solvation = -104.294633 kcal Electronic energy + Delta-G solvation = -23818.055427 eV Core-core repulsion = 20470.884390 eV Total energy + Delta-G solvation = -3347.171037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.14416 -40.29826 -38.43920 -36.64419 -36.00183 -35.08565 -33.37873 -30.17408 -29.18142 -28.31914 -25.72095 -24.80653 -23.58690 -23.30136 -21.77222 -20.95257 -19.88588 -19.49037 -18.41141 -17.98462 -17.30750 -17.09390 -16.56309 -15.96642 -15.88041 -15.61721 -15.11395 -14.88551 -14.70530 -14.27444 -14.04414 -13.74036 -13.31788 -13.22048 -13.17850 -12.92316 -12.61331 -12.59745 -12.42850 -12.36352 -12.26772 -11.95915 -11.83372 -11.72004 -11.51538 -11.48879 -11.05926 -10.69737 -10.50120 -10.39029 -10.02986 -8.69767 -6.45777 1.12009 1.34090 1.52576 1.60344 1.79427 1.90739 2.54460 2.90578 2.94354 3.11673 3.24494 3.58232 3.78160 3.88827 3.94803 3.99118 4.04446 4.11175 4.12566 4.15229 4.35219 4.54849 4.59249 4.61751 4.67295 4.73327 4.80272 4.80994 4.84898 4.93689 5.00099 5.04727 5.08705 5.14397 5.26294 5.58912 5.66103 5.73587 5.90895 5.92715 6.16537 6.43934 6.95835 7.33499 8.67062 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.006826 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.545644 B = 4100.771182 C = 5003.791268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.160 4.160 3 C -0.112 4.112 4 C 0.137 3.863 5 H 0.114 0.886 6 O -0.383 6.383 7 C 0.048 3.952 8 C -0.144 4.144 9 C -0.118 4.118 10 H 0.143 0.857 11 C 0.469 3.531 12 O -0.546 6.546 13 O -0.339 6.339 14 C 0.249 3.751 15 H -0.002 1.002 16 C -0.605 4.605 17 H 0.060 0.940 18 C -0.020 4.020 19 N -0.931 5.931 20 Si 1.117 2.883 21 H -0.283 1.283 22 H -0.265 1.265 23 H -0.272 1.272 24 C -0.178 4.178 25 C -0.151 4.151 26 C -0.190 4.190 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 -13.813 8.723 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.080 3.920 5 H 0.132 0.868 6 O -0.303 6.303 7 C -0.028 4.028 8 C -0.182 4.182 9 C -0.137 4.137 10 H 0.161 0.839 11 C 0.314 3.686 12 O -0.437 6.437 13 O -0.255 6.255 14 C 0.195 3.805 15 H 0.015 0.985 16 C -0.643 4.643 17 H 0.078 0.922 18 C -0.218 4.218 19 N -0.568 5.568 20 Si 0.938 3.062 21 H -0.208 1.208 22 H -0.190 1.190 23 H -0.197 1.197 24 C -0.197 4.197 25 C -0.188 4.188 26 C -0.226 4.226 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.826 -12.240 8.278 15.044 hybrid contribution 1.325 -0.471 -0.076 1.409 sum 4.151 -12.711 8.202 15.687 Atomic orbital electron populations 1.23808 0.94665 1.02953 0.97095 1.21636 0.95830 0.94977 1.03614 1.20778 1.00223 0.95325 1.00561 1.21665 0.90232 0.95631 0.84510 0.86818 1.88924 1.27855 1.75011 1.38509 1.23820 0.89956 0.97153 0.91822 1.23267 0.92388 1.04138 0.98360 1.22756 0.99959 0.95581 0.95402 0.83908 1.23628 0.80253 0.86918 0.77784 1.90570 1.44236 1.46621 1.62262 1.86502 1.34667 1.49797 1.54522 1.19651 0.96622 0.81466 0.82751 0.98464 1.22083 0.98498 1.16365 1.27319 0.92160 1.27239 1.08084 0.94650 0.91870 1.70893 1.06785 1.42617 1.36469 0.82937 0.70212 0.76000 0.77046 1.20840 1.18951 1.19703 1.22958 1.00055 0.97347 0.99368 1.22860 1.00416 0.92304 1.03230 1.23009 0.91191 1.06003 1.02445 0.85773 0.88873 0.94538 0.91720 0.92089 0.88590 0.87089 0.86682 0.91136 0.92558 0.88727 0.88541 0.87531 0.88089 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 13.86 67.78 0.94 -3.75 16 2 C -0.16 -5.38 3.49 -16.48 -0.06 -5.44 16 3 C -0.11 -4.32 8.76 71.24 0.62 -3.70 16 4 C 0.14 3.72 3.63 30.22 0.11 3.83 16 5 H 0.11 2.42 7.85 -2.39 -0.02 2.40 16 6 O -0.38 -10.20 10.55 -148.98 -1.57 -11.78 16 7 C 0.05 0.89 7.72 72.67 0.56 1.45 16 8 C -0.14 -3.28 6.59 31.90 0.21 -3.07 16 9 C -0.12 -3.25 3.55 -10.55 -0.04 -3.29 16 10 H 0.14 3.04 8.14 -2.38 -0.02 3.02 16 11 C 0.47 18.47 3.41 71.24 0.24 18.72 16 12 O -0.55 -24.91 12.04 21.96 0.26 -24.64 16 13 O -0.34 -15.17 7.46 -51.36 -0.38 -15.56 16 14 C 0.25 13.08 2.17 29.85 0.06 13.14 16 15 H 0.00 -0.13 6.76 -2.39 -0.02 -0.15 16 16 C -0.61 -33.95 8.90 25.60 0.23 -33.72 16 17 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 18 C -0.02 -1.10 5.18 84.65 0.44 -0.67 16 19 N -0.93 -56.06 12.85 21.45 0.28 -55.78 16 20 Si 1.12 49.28 29.90 68.60 2.05 51.33 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C -0.18 -8.58 4.61 -10.79 -0.05 -8.63 16 25 C -0.15 -5.75 9.88 30.62 0.30 -5.45 16 26 C -0.19 -7.65 10.01 30.62 0.31 -7.34 16 27 H 0.12 3.16 7.87 -2.91 -0.02 3.14 16 28 H 0.09 3.13 8.05 -2.92 -0.02 3.10 16 29 H 0.04 1.70 5.89 -2.39 -0.01 1.69 16 30 H 0.06 2.32 8.10 -2.38 -0.02 2.30 16 31 H 0.06 2.27 7.55 -2.39 -0.02 2.26 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.07 2.07 6.79 -2.39 -0.02 2.05 16 36 H 0.26 16.18 5.75 -92.71 -0.53 15.65 16 37 H 0.09 5.08 6.23 -2.38 -0.01 5.06 16 38 H 0.10 3.49 7.01 -2.38 -0.02 3.47 16 39 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.08 3.30 6.45 -2.39 -0.02 3.28 16 Total: -1.00 -70.02 326.83 5.77 -64.25 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 1.25 Total: 30.11 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.88 Total: -37.93 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -1.69 Total: -51.97 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Total: -70.02 5.77 -64.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.049 kcal (2) G-P(sol) polarization free energy of solvation -70.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds