Wall clock time and date at job start Tue Mar 31 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48498 * 109.47168 * 269.99531 * 3 2 1 5 5 H 1.48497 * 109.47190 * 29.99976 * 3 2 1 6 6 H 1.48502 * 109.47012 * 149.99356 * 3 2 1 7 7 C 1.37871 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47223 * 60.00131 * 9 7 2 11 11 O 1.45202 * 109.47212 * 180.02562 * 9 7 2 12 12 C 1.34804 * 116.99538 * 210.00320 * 11 9 7 13 13 O 1.21533 * 120.00206 * 359.97438 * 12 11 9 14 14 C 1.46955 * 119.99661 * 180.27086 * 12 11 9 15 15 C 1.33084 * 120.00048 * 179.72130 * 14 12 11 16 16 C 1.50693 * 119.99835 * 180.02562 * 15 14 12 17 17 C 1.53183 * 109.54325 * 239.82207 * 16 15 14 18 18 C 1.53101 * 109.16005 * 183.24144 * 17 16 15 19 19 O 1.42910 * 109.48459 * 57.47609 * 18 17 16 20 20 C 1.42897 * 114.09510 * 298.88466 * 19 18 17 21 21 C 1.53096 * 109.41543 * 61.16186 * 20 19 18 22 22 C 1.53000 * 109.47384 * 300.00095 * 9 7 2 23 23 C 1.53004 * 117.50069 * 248.74751 * 22 9 7 24 24 C 1.52996 * 117.50308 * 180.08516 * 22 9 7 25 25 H 0.97006 * 119.99920 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99739 * 359.72556 * 14 12 11 27 27 H 1.08002 * 119.99683 * 0.02562 * 15 14 12 28 28 H 1.09002 * 109.54918 * 359.97438 * 16 15 14 29 29 H 1.08999 * 109.52166 * 303.06364 * 17 16 15 30 30 H 1.09001 * 109.52176 * 63.24561 * 17 16 15 31 31 H 1.08998 * 109.40558 * 297.49415 * 18 17 16 32 32 H 1.08998 * 109.48470 * 177.50031 * 18 17 16 33 33 H 1.08999 * 109.48694 * 301.18039 * 20 19 18 34 34 H 1.09007 * 109.48199 * 181.14261 * 20 19 18 35 35 H 1.08997 * 109.52425 * 182.48038 * 21 20 19 36 36 H 1.09006 * 109.57542 * 62.32432 * 21 20 19 37 37 H 1.09008 * 115.54924 * 34.41029 * 22 9 7 38 38 H 1.09000 * 117.49849 * 359.97438 * 23 22 9 39 39 H 1.09004 * 117.49907 * 145.01642 * 23 22 9 40 40 H 1.08997 * 117.50332 * 214.98063 * 24 22 9 41 41 H 1.09004 * 117.49568 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 2.1945 -3.6028 0.0018 12 6 1.8019 -4.7441 -0.5987 13 8 0.7011 -4.8149 -1.1088 14 6 2.7027 -5.9048 -0.6307 15 6 2.3130 -7.0334 -1.2186 16 6 3.2365 -8.2238 -1.2510 17 6 3.5251 -8.6091 -2.7052 18 6 4.3975 -9.8670 -2.7280 19 8 3.7345 -10.9197 -2.0247 20 6 3.4828 -10.6332 -0.6476 21 6 2.5719 -9.4073 -0.5411 22 6 0.3708 -2.5799 1.2494 23 6 0.7520 -3.6075 2.3171 24 6 -0.4778 -3.8393 1.4354 25 1 -0.4850 0.8401 -0.0004 26 1 3.6808 -5.8419 -0.1771 27 1 1.3350 -7.0960 -1.6725 28 1 4.1708 -7.9744 -0.7480 29 1 2.5865 -8.8087 -3.2222 30 1 4.0486 -7.7920 -3.2014 31 1 5.3525 -9.6542 -2.2479 32 1 4.5693 -10.1716 -3.7604 33 1 4.4259 -10.4303 -0.1402 34 1 2.9958 -11.4896 -0.1812 35 1 2.4145 -9.1606 0.5088 36 1 1.6129 -9.6229 -1.0124 37 1 -0.0511 -1.6340 1.5893 38 1 1.6295 -4.2262 2.1295 39 1 0.5804 -3.3378 3.3592 40 1 -1.4578 -3.7221 1.8979 41 1 -0.4093 -4.6102 0.6678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:25 Heat of formation + Delta-G solvation = -105.302965 kcal Electronic energy + Delta-G solvation = -21826.229726 eV Core-core repulsion = 18479.014964 eV Total energy + Delta-G solvation = -3347.214761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85274 -39.47678 -36.69675 -35.42133 -34.63456 -32.81116 -31.58336 -31.38661 -28.00162 -25.85541 -23.81013 -23.51411 -22.23254 -21.43090 -20.40973 -19.51291 -18.85898 -17.23463 -16.73437 -16.27547 -16.22849 -15.81127 -15.36034 -14.99108 -14.77831 -14.38198 -14.16573 -13.85099 -13.15365 -12.82241 -12.69316 -12.45958 -12.25137 -11.62751 -11.57269 -11.39379 -11.25029 -11.23509 -11.08832 -10.95979 -10.59865 -10.58208 -10.31035 -10.08608 -9.90943 -9.67385 -9.48263 -9.36653 -9.11725 -8.53104 -8.44454 -6.19402 -4.26548 1.42014 3.24167 3.29788 3.33416 3.55552 3.57605 3.65854 4.30584 4.47938 4.54599 4.58246 4.72418 4.93592 4.94617 5.01380 5.13215 5.13396 5.27926 5.39390 5.41784 5.46834 5.56868 5.68520 5.72580 5.82534 5.85954 5.97077 6.08353 6.13899 6.40668 6.46158 6.46889 6.68978 6.90104 6.90713 7.01820 7.19371 7.56623 7.58783 7.83385 8.11195 8.60795 8.86955 9.37926 10.87835 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.003399 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.319646 B = 8236.077592 C = 8757.742337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.248 3.752 10 H 0.052 0.948 11 O -0.348 6.348 12 C 0.481 3.519 13 O -0.519 6.519 14 C -0.175 4.175 15 C -0.072 4.072 16 C -0.065 4.065 17 C -0.150 4.150 18 C 0.061 3.939 19 O -0.385 6.385 20 C 0.061 3.939 21 C -0.149 4.149 22 C -0.116 4.116 23 C -0.194 4.194 24 C -0.210 4.210 25 H 0.266 0.734 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.199 -17.521 -1.127 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.195 3.805 10 H 0.070 0.930 11 O -0.264 6.264 12 C 0.327 3.673 13 O -0.411 6.411 14 C -0.194 4.194 15 C -0.090 4.090 16 C -0.083 4.083 17 C -0.187 4.187 18 C -0.015 4.015 19 O -0.304 6.304 20 C -0.015 4.015 21 C -0.187 4.187 22 C -0.134 4.134 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.076 0.924 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.660 -17.518 -1.336 18.789 hybrid contribution 0.214 1.333 0.255 1.374 sum 6.873 -16.186 -1.081 17.618 Atomic orbital electron populations 1.69984 1.05905 1.27311 1.49059 1.24907 0.95059 0.99298 0.94631 0.86300 0.79670 0.82028 0.78317 1.20392 1.20956 1.19554 1.20953 0.93962 0.88375 1.52336 0.91179 1.20142 0.86000 0.80363 0.94003 0.93017 1.86597 1.48997 1.22030 1.68742 1.21371 0.85704 0.84538 0.75724 1.90764 1.22382 1.83876 1.44118 1.22175 1.00545 0.92108 1.04522 1.23638 0.99419 0.92538 0.93427 1.20426 0.98066 0.93089 0.96747 1.22229 1.01864 0.98544 0.96094 1.22590 0.94264 0.87263 0.97424 1.87935 1.79227 1.40612 1.22578 1.22590 0.98312 0.97772 0.82865 1.22224 1.00178 0.94569 1.01737 1.23020 0.99243 0.93723 0.97462 1.22800 0.98569 1.05946 0.95798 1.23147 0.94469 1.03610 1.03504 0.92400 0.84980 0.85403 0.89968 0.90467 0.90241 0.93061 0.88679 0.93050 0.88691 0.90291 0.90457 0.85271 0.89784 0.90436 0.90542 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 11.59 55.43 0.64 -24.36 16 2 C 0.06 1.74 5.20 -17.82 -0.09 1.65 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.47 8.90 -34.44 -0.31 -14.78 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.25 6.61 2.41 -27.88 -0.07 6.54 16 10 H 0.05 1.54 7.16 -51.93 -0.37 1.17 16 11 O -0.35 -8.26 8.39 -40.78 -0.34 -8.60 16 12 C 0.48 10.05 6.86 34.26 0.23 10.29 16 13 O -0.52 -12.07 13.31 -19.29 -0.26 -12.33 16 14 C -0.17 -2.66 9.76 -37.85 -0.37 -3.03 16 15 C -0.07 -0.91 8.36 -36.10 -0.30 -1.21 16 16 C -0.06 -0.61 2.57 -91.59 -0.24 -0.85 16 17 C -0.15 -1.30 5.41 -26.58 -0.14 -1.44 16 18 C 0.06 0.49 6.84 37.21 0.25 0.74 16 19 O -0.38 -3.77 10.77 -35.23 -0.38 -4.15 16 20 C 0.06 0.48 6.84 37.21 0.25 0.74 16 21 C -0.15 -1.29 5.41 -26.59 -0.14 -1.43 16 22 C -0.12 -2.90 5.27 -90.62 -0.48 -3.38 16 23 C -0.19 -4.14 9.80 -26.69 -0.26 -4.40 16 24 C -0.21 -4.66 9.85 -26.69 -0.26 -4.93 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.13 1.72 7.87 -52.49 -0.41 1.30 16 27 H 0.13 1.77 7.49 -52.49 -0.39 1.37 16 28 H 0.08 0.71 7.82 -51.93 -0.41 0.31 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.13 3.51 6.46 -51.92 -0.34 3.17 16 38 H 0.08 1.75 6.91 -51.93 -0.36 1.40 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 2.13 5.36 -51.93 -0.28 1.85 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -30.72 335.00 -8.56 -39.28 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.33 Total: 4.67 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.92 Total: -15.49 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.64 Total: -24.36 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.98 Total: -25.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.72 -8.56 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.024 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds