Wall clock time and date at job start Tue Mar 31 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48498 * 109.47168 * 269.99531 * 3 2 1 5 5 H 1.48497 * 109.47190 * 29.99976 * 3 2 1 6 6 H 1.48502 * 109.47012 * 149.99356 * 3 2 1 7 7 C 1.37871 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47223 * 60.00131 * 9 7 2 11 11 O 1.45202 * 109.47212 * 180.02562 * 9 7 2 12 12 C 1.34804 * 116.99538 * 210.00320 * 11 9 7 13 13 O 1.21533 * 120.00206 * 359.97438 * 12 11 9 14 14 C 1.46955 * 119.99661 * 180.27086 * 12 11 9 15 15 C 1.33084 * 120.00048 * 179.72130 * 14 12 11 16 16 C 1.50693 * 119.99835 * 180.02562 * 15 14 12 17 17 C 1.53183 * 109.54325 * 239.82207 * 16 15 14 18 18 C 1.53101 * 109.16005 * 183.24144 * 17 16 15 19 19 O 1.42910 * 109.48459 * 57.47609 * 18 17 16 20 20 C 1.42897 * 114.09510 * 298.88466 * 19 18 17 21 21 C 1.53096 * 109.41543 * 61.16186 * 20 19 18 22 22 C 1.53000 * 109.47384 * 300.00095 * 9 7 2 23 23 C 1.53004 * 117.50069 * 248.74751 * 22 9 7 24 24 C 1.52996 * 117.50308 * 180.08516 * 22 9 7 25 25 H 0.97006 * 119.99920 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99739 * 359.72556 * 14 12 11 27 27 H 1.08002 * 119.99683 * 0.02562 * 15 14 12 28 28 H 1.09002 * 109.54918 * 359.97438 * 16 15 14 29 29 H 1.08999 * 109.52166 * 303.06364 * 17 16 15 30 30 H 1.09001 * 109.52176 * 63.24561 * 17 16 15 31 31 H 1.08998 * 109.40558 * 297.49415 * 18 17 16 32 32 H 1.08998 * 109.48470 * 177.50031 * 18 17 16 33 33 H 1.08999 * 109.48694 * 301.18039 * 20 19 18 34 34 H 1.09007 * 109.48199 * 181.14261 * 20 19 18 35 35 H 1.08997 * 109.52425 * 182.48038 * 21 20 19 36 36 H 1.09006 * 109.57542 * 62.32432 * 21 20 19 37 37 H 1.09008 * 115.54924 * 34.41029 * 22 9 7 38 38 H 1.09000 * 117.49849 * 359.97438 * 23 22 9 39 39 H 1.09004 * 117.49907 * 145.01642 * 23 22 9 40 40 H 1.08997 * 117.50332 * 214.98063 * 24 22 9 41 41 H 1.09004 * 117.49568 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 2.1945 -3.6028 0.0018 12 6 1.8019 -4.7441 -0.5987 13 8 0.7011 -4.8149 -1.1088 14 6 2.7027 -5.9048 -0.6307 15 6 2.3130 -7.0334 -1.2186 16 6 3.2365 -8.2238 -1.2510 17 6 3.5251 -8.6091 -2.7052 18 6 4.3975 -9.8670 -2.7280 19 8 3.7345 -10.9197 -2.0247 20 6 3.4828 -10.6332 -0.6476 21 6 2.5719 -9.4073 -0.5411 22 6 0.3708 -2.5799 1.2494 23 6 0.7520 -3.6075 2.3171 24 6 -0.4778 -3.8393 1.4354 25 1 -0.4850 0.8401 -0.0004 26 1 3.6808 -5.8419 -0.1771 27 1 1.3350 -7.0960 -1.6725 28 1 4.1708 -7.9744 -0.7480 29 1 2.5865 -8.8087 -3.2222 30 1 4.0486 -7.7920 -3.2014 31 1 5.3525 -9.6542 -2.2479 32 1 4.5693 -10.1716 -3.7604 33 1 4.4259 -10.4303 -0.1402 34 1 2.9958 -11.4896 -0.1812 35 1 2.4145 -9.1606 0.5088 36 1 1.6129 -9.6229 -1.0124 37 1 -0.0511 -1.6340 1.5893 38 1 1.6295 -4.2262 2.1295 39 1 0.5804 -3.3378 3.3592 40 1 -1.4578 -3.7221 1.8979 41 1 -0.4093 -4.6102 0.6678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:24 Heat of formation + Delta-G solvation = -122.148964 kcal Electronic energy + Delta-G solvation = -21826.960223 eV Core-core repulsion = 18479.014964 eV Total energy + Delta-G solvation = -3347.945259 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44239 -40.34084 -38.42289 -36.59999 -36.27363 -34.88891 -32.64806 -32.01502 -29.98975 -26.94133 -25.36477 -24.45479 -23.61574 -23.18042 -21.39225 -20.97736 -20.43862 -18.90587 -18.52948 -17.56768 -17.36560 -16.91049 -16.90369 -16.42285 -15.67758 -15.63229 -15.46728 -14.89742 -14.75136 -14.35417 -13.77327 -13.74700 -13.31629 -13.28415 -13.15047 -12.97939 -12.80392 -12.38135 -12.27418 -12.23764 -12.07822 -11.99661 -11.93199 -11.57181 -11.36627 -11.18191 -11.04581 -10.52661 -10.49310 -10.46599 -10.44709 -8.27917 -6.44755 0.13661 1.41169 1.43040 1.54646 2.03121 2.03982 2.42390 2.99546 3.01363 3.13193 3.59819 3.73836 3.86543 4.04360 4.06202 4.08115 4.10615 4.24390 4.27073 4.34569 4.40559 4.55677 4.71354 4.73416 4.75241 4.83640 4.84935 4.90167 4.94319 5.04465 5.14380 5.17758 5.22480 5.27510 5.35624 5.43232 5.51684 5.54943 5.88175 6.09082 6.30140 6.60321 6.97114 7.26008 8.79596 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.003399 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.319646 B = 8236.077592 C = 8757.742337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.254 3.746 10 H 0.004 0.996 11 O -0.356 6.356 12 C 0.474 3.526 13 O -0.554 6.554 14 C -0.197 4.197 15 C -0.033 4.033 16 C -0.063 4.063 17 C -0.149 4.149 18 C 0.061 3.939 19 O -0.405 6.405 20 C 0.060 3.940 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.165 4.165 24 C -0.201 4.201 25 H 0.270 0.730 26 H 0.160 0.840 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 -18.681 -0.260 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.201 3.799 10 H 0.022 0.978 11 O -0.272 6.272 12 C 0.322 3.678 13 O -0.448 6.448 14 C -0.215 4.215 15 C -0.052 4.052 16 C -0.081 4.081 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.324 6.324 20 C -0.016 4.016 21 C -0.186 4.186 22 C -0.166 4.166 23 C -0.202 4.202 24 C -0.238 4.238 25 H 0.079 0.921 26 H 0.178 0.822 27 H 0.131 0.869 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.454 -18.705 -0.469 20.532 hybrid contribution -0.397 1.562 -0.098 1.615 sum 8.057 -17.143 -0.567 18.951 Atomic orbital electron populations 1.70114 1.07453 1.28362 1.49152 1.25822 0.95923 1.02806 0.93670 0.85219 0.78564 0.77274 0.78579 1.19790 1.20095 1.18608 1.21247 0.94000 0.89655 1.53450 0.91472 1.19725 0.85994 0.81295 0.92899 0.97827 1.86573 1.48415 1.22536 1.69663 1.22398 0.86206 0.84777 0.74406 1.90741 1.24188 1.84267 1.45596 1.22110 1.01006 0.90467 1.07932 1.23893 0.98950 0.92705 0.89606 1.20527 0.97991 0.91719 0.97864 1.22231 1.01840 0.99372 0.95220 1.22690 0.94338 0.86304 0.98219 1.87918 1.79527 1.41443 1.23528 1.22701 0.98865 0.97685 0.82337 1.22222 0.99944 0.94530 1.01865 1.22726 1.01328 0.93940 0.98636 1.22875 0.98063 1.03044 0.96181 1.23130 0.95745 1.01399 1.03509 0.92136 0.82244 0.86888 0.88088 0.91390 0.89711 0.91636 0.87591 0.91617 0.87542 0.89586 0.91374 0.87744 0.89197 0.87765 0.88758 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.10 11.59 21.44 0.25 -52.85 16 2 C 0.02 0.99 5.20 84.65 0.44 1.43 16 3 Si 0.98 43.20 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.55 -31.42 8.90 25.60 0.23 -31.19 16 8 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 9 C 0.25 14.17 2.41 29.85 0.07 14.24 16 10 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 11 O -0.36 -17.34 8.39 -57.16 -0.48 -17.82 16 12 C 0.47 20.26 6.86 70.11 0.48 20.74 16 13 O -0.55 -26.88 13.31 19.73 0.26 -26.62 16 14 C -0.20 -5.80 9.76 23.40 0.23 -5.57 16 15 C -0.03 -0.79 8.36 24.53 0.21 -0.59 16 16 C -0.06 -1.03 2.57 -11.42 -0.03 -1.06 16 17 C -0.15 -2.27 5.41 30.69 0.17 -2.10 16 18 C 0.06 0.81 6.84 72.02 0.49 1.30 16 19 O -0.40 -6.96 10.77 -148.98 -1.60 -8.57 16 20 C 0.06 0.79 6.84 72.01 0.49 1.28 16 21 C -0.15 -2.20 5.41 30.68 0.17 -2.04 16 22 C -0.15 -7.57 5.27 -10.79 -0.06 -7.62 16 23 C -0.16 -6.87 9.80 30.62 0.30 -6.57 16 24 C -0.20 -8.94 9.85 30.62 0.30 -8.64 16 25 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.16 3.79 7.87 -2.91 -0.02 3.76 16 27 H 0.11 3.11 7.49 -2.91 -0.02 3.09 16 28 H 0.10 1.38 7.82 -2.39 -0.02 1.36 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.10 5.87 6.46 -2.38 -0.02 5.85 16 38 H 0.09 3.64 6.91 -2.39 -0.02 3.62 16 39 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 40 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 41 H 0.08 3.89 5.36 -2.38 -0.01 3.87 16 Total: -1.00 -69.15 335.00 4.95 -64.20 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.01 Total: 22.83 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.49 Total: -26.39 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.25 Total: -52.85 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -1.82 Total: -53.01 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -69.15 4.95 -64.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.952 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds