Wall clock time and date at job start Tue Mar 31 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99599 * 2 1 4 4 H 1.48500 * 109.47082 * 239.99635 * 3 2 1 5 5 H 1.48492 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46976 * 120.00060 * 3 2 1 7 7 C 1.37871 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46851 * 299.99830 * 9 7 2 11 11 O 1.45194 * 109.47342 * 179.97438 * 9 7 2 12 12 C 1.34802 * 117.00083 * 149.99968 * 11 9 7 13 13 O 1.21538 * 119.99878 * 359.97438 * 12 11 9 14 14 C 1.46944 * 120.00340 * 179.97438 * 12 11 9 15 15 C 1.33086 * 120.00585 * 179.97438 * 14 12 11 16 16 C 1.50697 * 120.00272 * 179.97438 * 15 14 12 17 17 C 1.53175 * 109.54085 * 120.00659 * 16 15 14 18 18 C 1.53092 * 109.16344 * 176.84900 * 17 16 15 19 19 O 1.42905 * 109.41215 * 302.38824 * 18 17 16 20 20 C 1.42905 * 114.09831 * 61.16158 * 19 18 17 21 21 C 1.53098 * 109.41155 * 298.83847 * 20 19 18 22 22 C 1.52998 * 109.47273 * 59.99290 * 9 7 2 23 23 C 1.53007 * 117.50134 * 248.75000 * 22 9 7 24 24 C 1.52999 * 117.49934 * 180.09084 * 22 9 7 25 25 H 0.97004 * 120.00568 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99985 * 0.02562 * 14 12 11 27 27 H 1.08006 * 119.99430 * 0.02562 * 15 14 12 28 28 H 1.08996 * 109.54186 * 359.83024 * 16 15 14 29 29 H 1.09004 * 109.52714 * 56.93920 * 17 16 15 30 30 H 1.09001 * 109.57654 * 296.78651 * 17 16 15 31 31 H 1.08997 * 109.48111 * 182.40965 * 18 17 16 32 32 H 1.09000 * 109.48212 * 62.37239 * 18 17 16 33 33 H 1.09000 * 109.47932 * 58.81878 * 20 19 18 34 34 H 1.08993 * 109.48024 * 178.86013 * 20 19 18 35 35 H 1.08996 * 109.52270 * 297.70307 * 21 20 19 36 36 H 1.08995 * 109.57012 * 177.54155 * 21 20 19 37 37 H 1.08998 * 115.55374 * 34.42130 * 22 9 7 38 38 H 1.08993 * 117.49465 * 0.02562 * 23 22 9 39 39 H 1.09004 * 117.49518 * 145.02218 * 23 22 9 40 40 H 1.09011 * 117.49926 * 214.98046 * 24 22 9 41 41 H 1.08994 * 117.50381 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 2.1947 -3.6027 0.0005 12 6 1.8018 -4.7438 0.6011 13 8 0.7009 -4.8142 1.1111 14 6 2.7046 -5.9026 0.6391 15 6 2.3170 -7.0290 1.2324 16 6 3.2426 -8.2176 1.2708 17 6 3.5349 -8.5925 2.7269 18 6 4.4114 -9.8473 2.7566 19 8 3.7479 -10.9066 2.0637 20 6 3.4911 -10.6311 0.6852 21 6 2.5776 -9.4077 0.5723 22 6 0.3719 -2.5805 -1.2489 23 6 -1.1439 -2.5129 -1.0518 24 6 -0.4796 -3.8382 -1.4329 25 1 -0.4851 0.8400 -0.0004 26 1 3.6831 -5.8400 0.1862 27 1 1.3386 -7.0916 1.6857 28 1 4.1751 -7.9700 0.7638 29 1 2.5978 -8.7904 3.2474 30 1 4.0576 -7.7714 3.2176 31 1 4.5872 -10.1436 3.7907 32 1 5.3645 -9.6366 2.2716 33 1 4.4322 -10.4306 0.1731 34 1 3.0040 -11.4919 0.2271 35 1 1.6212 -9.6220 1.0492 36 1 2.4153 -9.1689 -0.4787 37 1 0.7840 -2.1163 -2.1449 38 1 -1.5146 -2.4101 -0.0320 39 1 -1.7289 -2.0045 -1.8183 40 1 -0.6279 -4.2013 -2.4500 41 1 -0.4131 -4.6080 -0.6641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:28 Heat of formation + Delta-G solvation = -106.416685 kcal Electronic energy + Delta-G solvation = -21744.319908 eV Core-core repulsion = 18397.056852 eV Total energy + Delta-G solvation = -3347.263056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79911 -39.38535 -36.59032 -35.42848 -34.77293 -32.63644 -31.56260 -31.37784 -27.95581 -25.83440 -23.79977 -23.44466 -22.11376 -21.22811 -20.38608 -19.49469 -19.00742 -17.34490 -16.59047 -16.26717 -16.25724 -15.62933 -15.13413 -14.96723 -14.71697 -14.47745 -14.13743 -13.85051 -13.11157 -12.79236 -12.70023 -12.61391 -12.17521 -11.61892 -11.52896 -11.37380 -11.22731 -11.19527 -11.04425 -10.91812 -10.59090 -10.43377 -10.27895 -9.89513 -9.82643 -9.65270 -9.34865 -9.33975 -9.01151 -8.63903 -8.41591 -6.14081 -4.22162 1.44686 3.27332 3.31060 3.32753 3.58279 3.59593 3.67352 4.33162 4.49095 4.55584 4.58696 4.73379 4.95383 5.01029 5.07533 5.14313 5.18534 5.29549 5.40068 5.44526 5.48306 5.57761 5.73313 5.74679 5.83504 5.96127 5.98342 6.16608 6.34305 6.44427 6.50702 6.57850 6.73668 6.90768 7.01628 7.17644 7.28598 7.41342 7.63660 7.86662 8.12931 8.64946 8.90513 9.42357 10.92656 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.003358 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.293100 B = 8335.764839 C = 8943.113772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.249 3.751 10 H 0.048 0.952 11 O -0.348 6.348 12 C 0.483 3.517 13 O -0.522 6.522 14 C -0.173 4.173 15 C -0.073 4.073 16 C -0.065 4.065 17 C -0.150 4.150 18 C 0.061 3.939 19 O -0.385 6.385 20 C 0.061 3.939 21 C -0.149 4.149 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.229 4.229 25 H 0.264 0.736 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 -17.393 1.407 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.196 3.804 10 H 0.066 0.934 11 O -0.264 6.264 12 C 0.329 3.671 13 O -0.415 6.415 14 C -0.192 4.192 15 C -0.092 4.092 16 C -0.083 4.083 17 C -0.187 4.187 18 C -0.015 4.015 19 O -0.304 6.304 20 C -0.015 4.015 21 C -0.187 4.187 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.266 4.266 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.027 -17.384 1.621 18.471 hybrid contribution 0.266 1.439 -0.283 1.491 sum 6.293 -15.945 1.338 17.194 Atomic orbital electron populations 1.70037 1.05752 1.27097 1.48031 1.24879 0.95034 0.99062 0.94560 0.86413 0.79365 0.81962 0.78820 1.20019 1.21116 1.20049 1.20876 0.93787 0.88441 1.53570 0.91367 1.20199 0.86149 0.80459 0.93581 0.93417 1.86584 1.48952 1.21977 1.68867 1.21338 0.85666 0.84475 0.75633 1.90753 1.22502 1.83847 1.44398 1.22174 1.00512 0.92153 1.04321 1.23631 0.99428 0.92550 0.93576 1.20423 0.98055 0.93098 0.96735 1.22227 1.01819 0.98586 0.96103 1.22593 0.94247 0.87140 0.97562 1.87934 1.79169 1.40563 1.22714 1.22590 0.98279 0.97849 0.82822 1.22224 1.00153 0.94534 1.01793 1.22596 0.92909 0.97382 1.00467 1.22361 0.95566 0.96724 1.01386 1.23279 1.09508 0.93038 1.00809 0.92573 0.84992 0.85422 0.89960 0.90470 0.90264 0.88696 0.93048 0.93055 0.88706 0.90471 0.90290 0.89352 0.89351 0.90792 0.91073 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 11.43 55.43 0.63 -23.73 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.83 8.88 -34.44 -0.31 -15.13 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.64 2.25 -27.88 -0.06 6.58 16 10 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 11 O -0.35 -8.38 9.85 -40.77 -0.40 -8.78 16 12 C 0.48 10.16 7.12 34.26 0.24 10.41 16 13 O -0.52 -12.13 13.31 -19.29 -0.26 -12.39 16 14 C -0.17 -2.64 9.76 -37.85 -0.37 -3.01 16 15 C -0.07 -0.93 8.36 -36.10 -0.30 -1.23 16 16 C -0.06 -0.61 2.57 -91.59 -0.24 -0.85 16 17 C -0.15 -1.30 5.40 -26.59 -0.14 -1.45 16 18 C 0.06 0.49 6.84 37.20 0.25 0.74 16 19 O -0.39 -3.78 10.77 -35.23 -0.38 -4.16 16 20 C 0.06 0.49 6.84 37.21 0.25 0.74 16 21 C -0.15 -1.29 5.41 -26.59 -0.14 -1.43 16 22 C -0.11 -2.86 4.47 -90.62 -0.41 -3.26 16 23 C -0.12 -2.88 9.04 -26.69 -0.24 -3.12 16 24 C -0.23 -5.04 9.80 -26.69 -0.26 -5.30 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.13 1.73 7.87 -52.48 -0.41 1.31 16 27 H 0.13 1.76 7.49 -52.48 -0.39 1.37 16 28 H 0.08 0.72 7.81 -51.93 -0.41 0.31 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 2.26 8.11 -51.93 -0.42 1.84 16 38 H 0.09 2.21 8.05 -51.93 -0.42 1.79 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 41 H 0.09 2.12 5.37 -51.93 -0.28 1.84 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -30.65 337.44 -8.61 -39.26 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.46 Total: 3.28 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.81 Total: -14.54 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.63 Total: -23.73 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.04 Total: -25.33 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.65 -8.61 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.156 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds