Wall clock time and date at job start Tue Mar 31 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99599 * 2 1 4 4 H 1.48500 * 109.47082 * 239.99635 * 3 2 1 5 5 H 1.48492 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46976 * 120.00060 * 3 2 1 7 7 C 1.37871 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46851 * 299.99830 * 9 7 2 11 11 O 1.45194 * 109.47342 * 179.97438 * 9 7 2 12 12 C 1.34802 * 117.00083 * 149.99968 * 11 9 7 13 13 O 1.21538 * 119.99878 * 359.97438 * 12 11 9 14 14 C 1.46944 * 120.00340 * 179.97438 * 12 11 9 15 15 C 1.33086 * 120.00585 * 179.97438 * 14 12 11 16 16 C 1.50697 * 120.00272 * 179.97438 * 15 14 12 17 17 C 1.53175 * 109.54085 * 120.00659 * 16 15 14 18 18 C 1.53092 * 109.16344 * 176.84900 * 17 16 15 19 19 O 1.42905 * 109.41215 * 302.38824 * 18 17 16 20 20 C 1.42905 * 114.09831 * 61.16158 * 19 18 17 21 21 C 1.53098 * 109.41155 * 298.83847 * 20 19 18 22 22 C 1.52998 * 109.47273 * 59.99290 * 9 7 2 23 23 C 1.53007 * 117.50134 * 248.75000 * 22 9 7 24 24 C 1.52999 * 117.49934 * 180.09084 * 22 9 7 25 25 H 0.97004 * 120.00568 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99985 * 0.02562 * 14 12 11 27 27 H 1.08006 * 119.99430 * 0.02562 * 15 14 12 28 28 H 1.08996 * 109.54186 * 359.83024 * 16 15 14 29 29 H 1.09004 * 109.52714 * 56.93920 * 17 16 15 30 30 H 1.09001 * 109.57654 * 296.78651 * 17 16 15 31 31 H 1.08997 * 109.48111 * 182.40965 * 18 17 16 32 32 H 1.09000 * 109.48212 * 62.37239 * 18 17 16 33 33 H 1.09000 * 109.47932 * 58.81878 * 20 19 18 34 34 H 1.08993 * 109.48024 * 178.86013 * 20 19 18 35 35 H 1.08996 * 109.52270 * 297.70307 * 21 20 19 36 36 H 1.08995 * 109.57012 * 177.54155 * 21 20 19 37 37 H 1.08998 * 115.55374 * 34.42130 * 22 9 7 38 38 H 1.08993 * 117.49465 * 0.02562 * 23 22 9 39 39 H 1.09004 * 117.49518 * 145.02218 * 23 22 9 40 40 H 1.09011 * 117.49926 * 214.98046 * 24 22 9 41 41 H 1.08994 * 117.50381 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 2.1947 -3.6027 0.0005 12 6 1.8018 -4.7438 0.6011 13 8 0.7009 -4.8142 1.1111 14 6 2.7046 -5.9026 0.6391 15 6 2.3170 -7.0290 1.2324 16 6 3.2426 -8.2176 1.2708 17 6 3.5349 -8.5925 2.7269 18 6 4.4114 -9.8473 2.7566 19 8 3.7479 -10.9066 2.0637 20 6 3.4911 -10.6311 0.6852 21 6 2.5776 -9.4077 0.5723 22 6 0.3719 -2.5805 -1.2489 23 6 -1.1439 -2.5129 -1.0518 24 6 -0.4796 -3.8382 -1.4329 25 1 -0.4851 0.8400 -0.0004 26 1 3.6831 -5.8400 0.1862 27 1 1.3386 -7.0916 1.6857 28 1 4.1751 -7.9700 0.7638 29 1 2.5978 -8.7904 3.2474 30 1 4.0576 -7.7714 3.2176 31 1 4.5872 -10.1436 3.7907 32 1 5.3645 -9.6366 2.2716 33 1 4.4322 -10.4306 0.1731 34 1 3.0040 -11.4919 0.2271 35 1 1.6212 -9.6220 1.0492 36 1 2.4153 -9.1689 -0.4787 37 1 0.7840 -2.1163 -2.1449 38 1 -1.5146 -2.4101 -0.0320 39 1 -1.7289 -2.0045 -1.8183 40 1 -0.6279 -4.2013 -2.4500 41 1 -0.4131 -4.6080 -0.6641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:27 Heat of formation + Delta-G solvation = -123.053709 kcal Electronic energy + Delta-G solvation = -21745.041344 eV Core-core repulsion = 18397.056852 eV Total energy + Delta-G solvation = -3347.984491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31954 -40.32850 -38.36012 -36.77260 -36.28574 -34.72222 -32.63266 -32.00930 -29.94786 -26.92263 -25.28294 -24.44763 -23.50581 -23.08578 -21.42027 -21.06642 -20.51314 -19.01210 -18.41755 -17.50046 -17.04197 -16.89572 -16.87046 -16.45952 -15.80318 -15.63695 -15.42057 -14.88216 -14.75036 -14.51037 -13.76070 -13.67149 -13.32081 -13.27536 -13.09092 -12.97242 -12.78205 -12.31607 -12.26346 -12.18517 -12.06887 -11.93977 -11.81526 -11.56429 -11.30543 -11.14764 -10.95505 -10.62277 -10.50865 -10.48270 -10.42128 -8.22518 -6.40132 0.15715 1.41866 1.45085 1.52637 2.04430 2.05991 2.43603 3.01353 3.04611 3.20392 3.63422 3.74855 3.87189 4.06759 4.08193 4.08787 4.13176 4.28536 4.35018 4.40737 4.42908 4.56258 4.67415 4.72465 4.75970 4.78054 4.84042 4.90706 5.04537 5.09148 5.15025 5.18680 5.23826 5.35523 5.38262 5.44330 5.47424 5.55521 5.83661 6.13184 6.30468 6.63046 7.00174 7.29927 8.83684 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.003358 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.293100 B = 8335.764839 C = 8943.113772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.254 3.746 10 H 0.006 0.994 11 O -0.360 6.360 12 C 0.476 3.524 13 O -0.555 6.555 14 C -0.196 4.196 15 C -0.033 4.033 16 C -0.063 4.063 17 C -0.149 4.149 18 C 0.061 3.939 19 O -0.405 6.405 20 C 0.060 3.940 21 C -0.148 4.148 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.200 4.200 25 H 0.268 0.732 26 H 0.159 0.841 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -18.448 0.697 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.082 0.918 9 C 0.201 3.799 10 H 0.023 0.977 11 O -0.276 6.276 12 C 0.324 3.676 13 O -0.449 6.449 14 C -0.214 4.214 15 C -0.052 4.052 16 C -0.081 4.081 17 C -0.187 4.187 18 C -0.016 4.016 19 O -0.324 6.324 20 C -0.016 4.016 21 C -0.186 4.186 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.237 4.237 25 H 0.077 0.923 26 H 0.176 0.824 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.433 -18.465 0.912 19.926 hybrid contribution -0.209 1.639 0.022 1.652 sum 7.224 -16.827 0.933 18.336 Atomic orbital electron populations 1.70154 1.07046 1.28078 1.47808 1.25740 0.95981 1.02362 0.93642 0.85346 0.78178 0.77404 0.79100 1.19103 1.20289 1.19577 1.21165 0.93810 0.89772 1.54948 0.91829 1.19839 0.86187 0.81290 0.92616 0.97657 1.86566 1.48593 1.22634 1.69846 1.22364 0.86224 0.84688 0.74324 1.90729 1.24201 1.84218 1.45788 1.22101 1.00953 0.90578 1.07780 1.23887 0.98986 0.92649 0.89695 1.20526 0.97965 0.91758 0.97865 1.22227 1.01812 0.99411 0.95209 1.22691 0.94310 0.86177 0.98373 1.87917 1.79463 1.41384 1.23664 1.22701 0.98820 0.97782 0.82290 1.22221 0.99939 0.94458 1.01931 1.22414 0.93353 1.00002 0.99392 1.22280 0.94780 0.98226 1.00597 1.23266 1.06454 0.91705 1.02236 0.92334 0.82370 0.86815 0.88136 0.91354 0.89756 0.87598 0.91647 0.91651 0.87533 0.91334 0.89584 0.90143 0.91766 0.89129 0.87754 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.85 11.43 21.44 0.25 -50.61 16 2 C 0.02 1.38 5.30 84.65 0.45 1.83 16 3 Si 0.98 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -32.26 8.88 25.60 0.23 -32.03 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.25 14.12 2.25 29.85 0.07 14.18 16 10 H 0.01 0.36 6.92 -2.39 -0.02 0.34 16 11 O -0.36 -17.91 9.85 -57.14 -0.56 -18.47 16 12 C 0.48 20.50 7.12 70.10 0.50 21.00 16 13 O -0.55 -26.82 13.31 19.71 0.26 -26.56 16 14 C -0.20 -5.83 9.76 23.40 0.23 -5.60 16 15 C -0.03 -0.81 8.36 24.53 0.21 -0.61 16 16 C -0.06 -1.04 2.57 -11.42 -0.03 -1.07 16 17 C -0.15 -2.28 5.40 30.68 0.17 -2.12 16 18 C 0.06 0.81 6.84 72.01 0.49 1.31 16 19 O -0.41 -6.99 10.77 -148.98 -1.60 -8.60 16 20 C 0.06 0.79 6.84 72.01 0.49 1.28 16 21 C -0.15 -2.21 5.41 30.69 0.17 -2.04 16 22 C -0.13 -6.75 4.47 -10.79 -0.05 -6.80 16 23 C -0.12 -5.78 9.04 30.62 0.28 -5.50 16 24 C -0.20 -8.72 9.80 30.62 0.30 -8.42 16 25 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.16 3.84 7.87 -2.91 -0.02 3.82 16 27 H 0.11 3.12 7.49 -2.91 -0.02 3.10 16 28 H 0.10 1.40 7.81 -2.39 -0.02 1.38 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 4.18 8.11 -2.39 -0.02 4.16 16 38 H 0.06 3.34 8.05 -2.39 -0.02 3.32 16 39 H 0.09 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.10 3.86 8.14 -2.38 -0.02 3.84 16 41 H 0.08 3.86 5.37 -2.39 -0.01 3.85 16 Total: -1.00 -68.15 337.44 4.86 -63.29 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.00 Total: 20.34 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.49 Total: -24.60 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.25 Total: -50.61 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -1.90 Total: -53.62 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.15 4.86 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.766 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds