Wall clock time and date at job start Tue Mar 31 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48498 * 109.47336 * 239.99936 * 3 2 1 5 5 H 1.48503 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47025 * 120.00168 * 3 2 1 7 7 C 1.37881 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99724 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47322 * 60.00033 * 9 7 2 11 11 O 1.45196 * 109.47048 * 180.02562 * 9 7 2 12 12 C 1.34800 * 116.99941 * 210.00116 * 11 9 7 13 13 O 1.21530 * 120.00041 * 359.97438 * 12 11 9 14 14 C 1.46954 * 119.99820 * 179.97438 * 12 11 9 15 15 C 1.33081 * 119.99778 * 186.95808 * 14 12 11 16 16 C 1.50698 * 120.00182 * 14.12513 * 15 14 12 17 17 C 1.53179 * 109.54640 * 248.95845 * 16 15 14 18 18 C 1.53088 * 109.16861 * 183.14929 * 17 16 15 19 19 O 1.42906 * 109.41125 * 57.60906 * 18 17 16 20 20 C 1.42901 * 114.09758 * 298.84217 * 19 18 17 21 21 C 1.53090 * 109.41547 * 61.16032 * 20 19 18 22 22 C 1.52996 * 109.46989 * 299.99749 * 9 7 2 23 23 C 1.52998 * 117.50093 * 248.74682 * 22 9 7 24 24 C 1.53003 * 117.49644 * 180.08607 * 22 9 7 25 25 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00332 * 6.96157 * 14 12 11 27 27 H 1.07996 * 120.00148 * 194.39894 * 15 14 12 28 28 H 1.09001 * 109.54270 * 9.22218 * 16 15 14 29 29 H 1.09002 * 109.52243 * 303.05794 * 17 16 15 30 30 H 1.08997 * 109.52200 * 63.24289 * 17 16 15 31 31 H 1.09000 * 109.48337 * 297.62965 * 18 17 16 32 32 H 1.09001 * 109.48051 * 177.59040 * 18 17 16 33 33 H 1.08999 * 109.48261 * 301.17580 * 20 19 18 34 34 H 1.09003 * 109.47825 * 181.14217 * 20 19 18 35 35 H 1.09004 * 109.52224 * 182.48398 * 21 20 19 36 36 H 1.08997 * 109.57561 * 62.32577 * 21 20 19 37 37 H 1.08997 * 115.55220 * 34.41888 * 22 9 7 38 38 H 1.09008 * 117.49595 * 0.02562 * 23 22 9 39 39 H 1.08997 * 117.50349 * 145.02383 * 23 22 9 40 40 H 1.09004 * 117.49859 * 214.97479 * 24 22 9 41 41 H 1.08998 * 117.50150 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 2.1945 -3.6028 0.0018 12 6 1.8020 -4.7441 -0.5986 13 8 0.7012 -4.8150 -1.1086 14 6 2.7053 -5.9027 -0.6363 15 6 2.3768 -6.9797 -1.3457 16 6 1.2591 -6.9058 -2.3538 17 6 0.0704 -7.7379 -1.8629 18 6 -1.0290 -7.7212 -2.9281 19 8 -0.5058 -8.2261 -4.1584 20 6 0.5772 -7.4603 -4.6899 21 6 1.7411 -7.4664 -3.6954 22 6 0.3710 -2.5799 1.2495 23 6 0.7521 -3.6074 2.3171 24 6 -0.4776 -3.8394 1.4355 25 1 -0.4850 0.8400 -0.0004 26 1 3.6357 -5.8801 -0.0884 27 1 2.9082 -7.9078 -1.1958 28 1 0.9513 -5.8680 -2.4817 29 1 0.3920 -8.7645 -1.6874 30 1 -0.3141 -7.3122 -0.9360 31 1 -1.3784 -6.6991 -3.0740 32 1 -1.8601 -8.3468 -2.6026 33 1 0.2488 -6.4347 -4.8588 34 1 0.9031 -7.8978 -5.6335 35 1 2.5514 -6.8466 -4.0791 36 1 2.0975 -8.4871 -3.5566 37 1 -0.0509 -1.6341 1.5892 38 1 1.6302 -4.2257 2.1298 39 1 0.5806 -3.3378 3.3591 40 1 -1.4576 -3.7221 1.8981 41 1 -0.4086 -4.6106 0.6683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:30 Heat of formation + Delta-G solvation = -91.444609 kcal Electronic energy + Delta-G solvation = -22685.580957 eV Core-core repulsion = 19338.967139 eV Total energy + Delta-G solvation = -3346.613818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07190 -39.10121 -36.84794 -35.08839 -34.44716 -32.82638 -31.50476 -31.05382 -27.99582 -25.48746 -23.57049 -23.50375 -22.34790 -21.45079 -20.26757 -19.54863 -18.82890 -17.03234 -16.72717 -16.10642 -15.94799 -15.78374 -15.03976 -14.78696 -14.52617 -14.25045 -13.91243 -13.76597 -13.35854 -12.87064 -12.48474 -12.36600 -12.08533 -11.63409 -11.50144 -11.33875 -11.16761 -11.04821 -10.96207 -10.91286 -10.57900 -10.32769 -10.21362 -10.08334 -9.55784 -9.52588 -9.40307 -9.17222 -8.93811 -8.54213 -8.44764 -6.20760 -4.27924 1.41150 3.24997 3.28903 3.30850 3.49917 3.71653 3.89170 4.32419 4.68789 4.84137 4.91534 4.92296 5.05693 5.12050 5.28143 5.33244 5.39362 5.54835 5.61995 5.69725 5.71914 5.84423 5.86996 5.91845 6.00738 6.07044 6.12522 6.16009 6.31970 6.34745 6.45426 6.57579 6.72375 6.97468 7.00759 7.18537 7.20402 7.55125 7.58763 7.82974 8.10288 8.59285 8.85531 9.36683 10.86369 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.004467 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.702112 B = 6267.282395 C = 6513.512440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.249 3.751 10 H 0.052 0.948 11 O -0.348 6.348 12 C 0.481 3.519 13 O -0.509 6.509 14 C -0.187 4.187 15 C -0.061 4.061 16 C -0.102 4.102 17 C -0.133 4.133 18 C 0.061 3.939 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.195 4.195 24 C -0.209 4.209 25 H 0.267 0.733 26 H 0.136 0.864 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -13.945 -3.604 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.070 0.930 11 O -0.264 6.264 12 C 0.328 3.672 13 O -0.403 6.403 14 C -0.206 4.206 15 C -0.079 4.079 16 C -0.120 4.120 17 C -0.171 4.171 18 C -0.015 4.015 19 O -0.307 6.307 20 C -0.015 4.015 21 C -0.185 4.185 22 C -0.135 4.135 23 C -0.232 4.232 24 C -0.246 4.246 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.756 -13.929 -3.816 14.548 hybrid contribution 0.517 1.112 0.394 1.288 sum 2.273 -12.816 -3.422 13.459 Atomic orbital electron populations 1.69967 1.05900 1.27435 1.48983 1.24892 0.95037 0.99253 0.94593 0.86373 0.79358 0.81739 0.78917 1.19974 1.21032 1.19901 1.20918 0.93923 0.88422 1.52469 0.91271 1.20119 0.85955 0.80358 0.93942 0.93015 1.86610 1.48913 1.21949 1.68908 1.21444 0.86045 0.84156 0.75569 1.90607 1.22798 1.83517 1.43372 1.22190 1.00518 0.92674 1.05191 1.23670 0.95759 0.96327 0.92155 1.21179 0.93595 1.04813 0.92366 1.21985 0.95811 0.99630 0.99655 1.22578 0.95527 0.99642 0.83765 1.87876 1.50264 1.53806 1.38773 1.22530 0.86727 0.96142 0.96058 1.22225 0.98761 1.01666 0.95831 1.23019 0.99250 0.93702 0.97492 1.22800 0.98604 1.05972 0.95806 1.23145 0.94403 1.03576 1.03496 0.92341 0.84665 0.85606 0.85360 0.91892 0.90393 0.92560 0.89133 0.92925 0.89119 0.90955 0.91434 0.85351 0.89772 0.90500 0.90634 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 11.59 55.43 0.64 -24.05 16 2 C 0.07 1.75 5.20 -17.82 -0.09 1.66 16 3 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -14.29 8.90 -34.44 -0.31 -14.59 16 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.46 2.41 -27.88 -0.07 6.39 16 10 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 11 O -0.35 -8.02 8.39 -40.76 -0.34 -8.36 16 12 C 0.48 9.52 6.66 34.26 0.23 9.75 16 13 O -0.51 -10.71 10.19 -19.29 -0.20 -10.91 16 14 C -0.19 -2.77 10.13 -37.85 -0.38 -3.15 16 15 C -0.06 -0.75 8.84 -36.10 -0.32 -1.07 16 16 C -0.10 -1.36 1.78 -91.59 -0.16 -1.53 16 17 C -0.13 -1.69 5.31 -26.59 -0.14 -1.83 16 18 C 0.06 0.77 6.84 37.20 0.25 1.03 16 19 O -0.39 -5.14 10.77 -35.23 -0.38 -5.51 16 20 C 0.06 0.71 6.84 37.20 0.25 0.97 16 21 C -0.15 -1.65 5.40 -26.59 -0.14 -1.79 16 22 C -0.12 -2.84 5.27 -90.62 -0.48 -3.32 16 23 C -0.19 -4.08 9.80 -26.69 -0.26 -4.35 16 24 C -0.21 -4.49 9.85 -26.69 -0.26 -4.76 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.13 2.16 4.83 -52.73 -0.25 1.90 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.13 3.44 6.46 -51.93 -0.34 3.10 16 38 H 0.08 1.73 6.91 -51.92 -0.36 1.37 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.09 2.05 5.36 -51.93 -0.28 1.77 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -29.12 329.35 -8.43 -37.55 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.21 Total: 7.15 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.88 Total: -16.58 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.64 Total: -24.05 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.92 Total: -24.78 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.12 -8.43 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.893 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds