Wall clock time and date at job start Tue Mar 31 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48498 * 109.47336 * 239.99936 * 3 2 1 5 5 H 1.48503 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47025 * 120.00168 * 3 2 1 7 7 C 1.37881 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99724 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47322 * 60.00033 * 9 7 2 11 11 O 1.45196 * 109.47048 * 180.02562 * 9 7 2 12 12 C 1.34800 * 116.99941 * 210.00116 * 11 9 7 13 13 O 1.21530 * 120.00041 * 359.97438 * 12 11 9 14 14 C 1.46954 * 119.99820 * 179.97438 * 12 11 9 15 15 C 1.33081 * 119.99778 * 186.95808 * 14 12 11 16 16 C 1.50698 * 120.00182 * 14.12513 * 15 14 12 17 17 C 1.53179 * 109.54640 * 248.95845 * 16 15 14 18 18 C 1.53088 * 109.16861 * 183.14929 * 17 16 15 19 19 O 1.42906 * 109.41125 * 57.60906 * 18 17 16 20 20 C 1.42901 * 114.09758 * 298.84217 * 19 18 17 21 21 C 1.53090 * 109.41547 * 61.16032 * 20 19 18 22 22 C 1.52996 * 109.46989 * 299.99749 * 9 7 2 23 23 C 1.52998 * 117.50093 * 248.74682 * 22 9 7 24 24 C 1.53003 * 117.49644 * 180.08607 * 22 9 7 25 25 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00332 * 6.96157 * 14 12 11 27 27 H 1.07996 * 120.00148 * 194.39894 * 15 14 12 28 28 H 1.09001 * 109.54270 * 9.22218 * 16 15 14 29 29 H 1.09002 * 109.52243 * 303.05794 * 17 16 15 30 30 H 1.08997 * 109.52200 * 63.24289 * 17 16 15 31 31 H 1.09000 * 109.48337 * 297.62965 * 18 17 16 32 32 H 1.09001 * 109.48051 * 177.59040 * 18 17 16 33 33 H 1.08999 * 109.48261 * 301.17580 * 20 19 18 34 34 H 1.09003 * 109.47825 * 181.14217 * 20 19 18 35 35 H 1.09004 * 109.52224 * 182.48398 * 21 20 19 36 36 H 1.08997 * 109.57561 * 62.32577 * 21 20 19 37 37 H 1.08997 * 115.55220 * 34.41888 * 22 9 7 38 38 H 1.09008 * 117.49595 * 0.02562 * 23 22 9 39 39 H 1.08997 * 117.50349 * 145.02383 * 23 22 9 40 40 H 1.09004 * 117.49859 * 214.97479 * 24 22 9 41 41 H 1.08998 * 117.50150 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 2.1945 -3.6028 0.0018 12 6 1.8020 -4.7441 -0.5986 13 8 0.7012 -4.8150 -1.1086 14 6 2.7053 -5.9027 -0.6363 15 6 2.3768 -6.9797 -1.3457 16 6 1.2591 -6.9058 -2.3538 17 6 0.0704 -7.7379 -1.8629 18 6 -1.0290 -7.7212 -2.9281 19 8 -0.5058 -8.2261 -4.1584 20 6 0.5772 -7.4603 -4.6899 21 6 1.7411 -7.4664 -3.6954 22 6 0.3710 -2.5799 1.2495 23 6 0.7521 -3.6074 2.3171 24 6 -0.4776 -3.8394 1.4355 25 1 -0.4850 0.8400 -0.0004 26 1 3.6357 -5.8801 -0.0884 27 1 2.9082 -7.9078 -1.1958 28 1 0.9513 -5.8680 -2.4817 29 1 0.3920 -8.7645 -1.6874 30 1 -0.3141 -7.3122 -0.9360 31 1 -1.3784 -6.6991 -3.0740 32 1 -1.8601 -8.3468 -2.6026 33 1 0.2488 -6.4347 -4.8588 34 1 0.9031 -7.8978 -5.6335 35 1 2.5514 -6.8466 -4.0791 36 1 2.0975 -8.4871 -3.5566 37 1 -0.0509 -1.6341 1.5892 38 1 1.6302 -4.2257 2.1298 39 1 0.5806 -3.3378 3.3591 40 1 -1.4576 -3.7221 1.8981 41 1 -0.4086 -4.6106 0.6683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:30 Heat of formation + Delta-G solvation = -107.147786 kcal Electronic energy + Delta-G solvation = -22686.261898 eV Core-core repulsion = 19338.967139 eV Total energy + Delta-G solvation = -3347.294759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56841 -40.26119 -38.46859 -36.62593 -35.84295 -34.87654 -32.62067 -32.01673 -29.95630 -26.72119 -25.38149 -24.47532 -23.80675 -23.17971 -21.33554 -21.20526 -20.38633 -18.70063 -18.45163 -17.50090 -17.39510 -16.93788 -16.77358 -15.99350 -15.90907 -15.52441 -15.42363 -14.90509 -14.59920 -14.33898 -14.20348 -13.62312 -13.32871 -13.27298 -13.07672 -12.92506 -12.79090 -12.44265 -12.35511 -12.26274 -12.20177 -11.96194 -11.88352 -11.34842 -11.26531 -11.14998 -10.65528 -10.56225 -10.43679 -10.38356 -10.20891 -8.27258 -6.43629 0.21480 1.40793 1.44069 1.52047 2.07689 2.13543 2.45916 2.93647 3.00952 3.15754 3.64945 3.85364 3.92599 4.03713 4.07438 4.10096 4.26514 4.29622 4.33329 4.38065 4.50793 4.60047 4.67884 4.75302 4.77043 4.86096 4.91650 4.95374 4.97334 5.02295 5.15220 5.22914 5.26101 5.28916 5.30823 5.49204 5.56828 5.67598 5.96116 6.18308 6.22040 6.61953 7.05322 7.28139 8.79819 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.004467 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.702112 B = 6267.282395 C = 6513.512440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.258 3.742 10 H 0.006 0.994 11 O -0.361 6.361 12 C 0.469 3.531 13 O -0.531 6.531 14 C -0.211 4.211 15 C -0.023 4.023 16 C -0.111 4.111 17 C -0.127 4.127 18 C 0.061 3.939 19 O -0.396 6.396 20 C 0.056 3.944 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.168 4.168 24 C -0.197 4.197 25 H 0.269 0.731 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -15.916 -3.250 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.204 3.796 10 H 0.024 0.976 11 O -0.277 6.277 12 C 0.318 3.682 13 O -0.425 6.425 14 C -0.230 4.230 15 C -0.041 4.041 16 C -0.129 4.129 17 C -0.165 4.165 18 C -0.016 4.016 19 O -0.315 6.315 20 C -0.021 4.021 21 C -0.177 4.177 22 C -0.166 4.166 23 C -0.205 4.205 24 C -0.234 4.234 25 H 0.078 0.922 26 H 0.178 0.822 27 H 0.193 0.807 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.297 -15.922 -3.467 16.625 hybrid contribution -0.031 1.619 0.166 1.628 sum 3.266 -14.303 -3.300 15.037 Atomic orbital electron populations 1.70099 1.07397 1.28353 1.49215 1.25771 0.95861 1.02654 0.93710 0.85330 0.78181 0.77221 0.79274 1.19373 1.20294 1.18910 1.21229 0.93919 0.89873 1.53394 0.91709 1.19639 0.85898 0.81253 0.92781 0.97645 1.86582 1.48417 1.22610 1.70126 1.22465 0.86908 0.84219 0.74642 1.90627 1.24082 1.83782 1.43992 1.22229 1.01312 0.91181 1.08272 1.24105 0.94004 0.96909 0.89110 1.21151 0.94607 1.02856 0.94323 1.21925 0.95408 1.00500 0.98668 1.22597 0.96227 0.98840 0.83925 1.87865 1.50863 1.53974 1.38841 1.22700 0.86552 0.95490 0.97324 1.22181 0.98569 1.02885 0.94054 1.22718 1.01386 0.93844 0.98682 1.22862 0.98258 1.03253 0.96087 1.23124 0.95437 1.01368 1.03432 0.92184 0.82197 0.80748 0.89400 0.89480 0.92156 0.94862 0.87312 0.94590 0.86585 0.90319 0.89056 0.88039 0.89210 0.88123 0.89043 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.82 11.59 21.45 0.25 -52.57 16 2 C 0.02 1.12 5.20 84.66 0.44 1.56 16 3 Si 0.98 43.13 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.55 -31.25 8.90 25.60 0.23 -31.02 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.26 14.09 2.41 29.85 0.07 14.16 16 10 H 0.01 0.36 7.16 -2.39 -0.02 0.35 16 11 O -0.36 -17.21 8.39 -57.11 -0.48 -17.69 16 12 C 0.47 19.03 6.66 70.11 0.47 19.50 16 13 O -0.53 -23.49 10.19 19.74 0.20 -23.29 16 14 C -0.21 -5.94 10.13 23.40 0.24 -5.70 16 15 C -0.02 -0.51 8.84 24.53 0.22 -0.29 16 16 C -0.11 -2.83 1.78 -11.42 -0.02 -2.85 16 17 C -0.13 -3.05 5.31 30.68 0.16 -2.88 16 18 C 0.06 1.50 6.84 72.01 0.49 1.99 16 19 O -0.40 -9.93 10.77 -148.98 -1.60 -11.54 16 20 C 0.06 1.21 6.84 72.01 0.49 1.70 16 21 C -0.14 -2.77 5.40 30.68 0.17 -2.61 16 22 C -0.15 -7.46 5.27 -10.79 -0.06 -7.52 16 23 C -0.17 -6.94 9.80 30.62 0.30 -6.64 16 24 C -0.20 -8.54 9.85 30.62 0.30 -8.24 16 25 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 27 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.09 3.06 4.83 -15.14 -0.07 2.98 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 5.68 6.46 -2.39 -0.02 5.66 16 38 H 0.09 3.61 6.91 -2.38 -0.02 3.60 16 39 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 40 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.09 3.94 5.36 -2.39 -0.01 3.93 16 Total: -1.00 -66.98 329.35 4.84 -62.13 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.95 Total: 26.64 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.50 Total: -28.84 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.25 Total: -52.57 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -1.88 Total: -52.52 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.98 4.84 -62.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.015 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds