Wall clock time and date at job start Tue Mar 31 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47049 * 239.99301 * 3 2 1 5 5 H 1.48495 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47094 * 119.99574 * 3 2 1 7 7 C 1.37877 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99866 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46775 * 299.99425 * 9 7 2 11 11 O 1.45203 * 109.47212 * 179.97438 * 9 7 2 12 12 C 1.34792 * 117.00053 * 149.99607 * 11 9 7 13 13 O 1.21535 * 120.00174 * 359.97438 * 12 11 9 14 14 C 1.46951 * 120.00299 * 179.72426 * 12 11 9 15 15 C 1.33081 * 120.00353 * 186.96401 * 14 12 11 16 16 C 1.50694 * 120.00027 * 16.88597 * 15 14 12 17 17 C 1.53174 * 109.54551 * 252.97434 * 16 15 14 18 18 C 1.53093 * 109.16525 * 183.15144 * 17 16 15 19 19 O 1.42903 * 109.41507 * 57.61026 * 18 17 16 20 20 C 1.42902 * 114.09861 * 298.84342 * 19 18 17 21 21 C 1.53096 * 109.41602 * 61.15512 * 20 19 18 22 22 C 1.52995 * 109.47243 * 59.99204 * 9 7 2 23 23 C 1.52995 * 117.50198 * 248.74871 * 22 9 7 24 24 C 1.53005 * 117.49871 * 180.08543 * 22 9 7 25 25 H 0.97003 * 119.99703 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99421 * 6.95791 * 14 12 11 27 27 H 1.07998 * 119.99858 * 196.88559 * 15 14 12 28 28 H 1.09003 * 109.54471 * 13.24621 * 16 15 14 29 29 H 1.08996 * 109.52563 * 303.05918 * 17 16 15 30 30 H 1.09003 * 109.51803 * 63.24978 * 17 16 15 31 31 H 1.09003 * 109.47993 * 297.62728 * 18 17 16 32 32 H 1.09003 * 109.48050 * 177.59386 * 18 17 16 33 33 H 1.09005 * 109.48165 * 301.17760 * 20 19 18 34 34 H 1.08991 * 109.48360 * 181.13908 * 20 19 18 35 35 H 1.08995 * 109.52316 * 182.48675 * 21 20 19 36 36 H 1.08996 * 109.57150 * 62.32939 * 21 20 19 37 37 H 1.09007 * 115.54907 * 34.42477 * 22 9 7 38 38 H 1.08999 * 117.49989 * 0.02562 * 23 22 9 39 39 H 1.08999 * 117.49726 * 145.02699 * 23 22 9 40 40 H 1.08997 * 117.49897 * 214.98147 * 24 22 9 41 41 H 1.09001 * 117.49863 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 2.1946 -3.6028 0.0005 12 6 1.8017 -4.7438 0.6011 13 8 0.7008 -4.8142 1.1112 14 6 2.7023 -5.9045 0.6343 15 6 2.2666 -7.0717 1.1021 16 6 0.7872 -7.3236 1.2394 17 6 0.3976 -7.2940 2.7205 18 6 -1.0902 -7.6283 2.8556 19 8 -1.3448 -8.9068 2.2702 20 6 -1.0439 -8.9801 0.8751 21 6 0.4458 -8.7000 0.6604 22 6 0.3717 -2.5804 -1.2489 23 6 -1.1440 -2.5128 -1.0518 24 6 -0.4798 -3.8383 -1.4329 25 1 -0.4850 0.8401 -0.0004 26 1 3.7178 -5.8103 0.2789 27 1 2.9733 -7.8385 1.3834 28 1 0.2347 -6.5540 0.7002 29 1 0.9874 -8.0298 3.2671 30 1 0.5860 -6.3002 3.1268 31 1 -1.6813 -6.8695 2.3429 32 1 -1.3634 -7.6507 3.9106 33 1 -1.6344 -8.2389 0.3364 34 1 -1.2838 -9.9762 0.5034 35 1 0.6686 -8.7119 -0.4064 36 1 1.0373 -9.4642 1.1646 37 1 0.7840 -2.1162 -2.1449 38 1 -1.5148 -2.4099 -0.0320 39 1 -1.7289 -2.0045 -1.8182 40 1 -0.6281 -4.2012 -2.4499 41 1 -0.4132 -4.6080 -0.6641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:33 Heat of formation + Delta-G solvation = -94.995501 kcal Electronic energy + Delta-G solvation = -22741.969877 eV Core-core repulsion = 19395.202081 eV Total energy + Delta-G solvation = -3346.767796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97487 -39.03654 -36.70355 -35.22307 -34.48710 -32.64810 -31.48574 -31.04217 -27.94043 -25.47275 -23.51966 -23.48938 -22.22426 -21.26627 -20.25436 -19.52072 -18.93476 -17.14029 -16.58583 -16.22173 -15.94360 -15.25278 -14.99444 -14.74404 -14.59049 -14.35046 -13.84977 -13.75482 -13.37905 -12.81665 -12.59775 -12.37274 -12.02509 -11.53953 -11.47882 -11.33759 -11.17129 -11.02162 -10.89473 -10.86232 -10.45937 -10.28040 -10.19300 -9.84354 -9.55954 -9.37538 -9.34261 -9.09332 -8.98862 -8.65407 -8.42434 -6.15260 -4.23053 1.42505 3.26642 3.30593 3.32390 3.54752 3.74775 3.89454 4.35347 4.68128 4.82670 4.92281 5.02428 5.06028 5.16395 5.27271 5.35788 5.42217 5.57050 5.61463 5.70583 5.76552 5.85923 5.90485 5.93874 6.02054 6.13245 6.21027 6.29387 6.34419 6.41891 6.50634 6.60827 6.80919 6.98989 7.15276 7.20962 7.27900 7.41072 7.62948 7.85804 8.12433 8.64543 8.90118 9.41658 10.91426 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.004415 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.868919 B = 6339.909970 C = 6649.082799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.249 3.751 10 H 0.049 0.951 11 O -0.349 6.349 12 C 0.482 3.518 13 O -0.513 6.513 14 C -0.185 4.185 15 C -0.064 4.064 16 C -0.087 4.087 17 C -0.134 4.134 18 C 0.062 3.938 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.149 4.149 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.229 4.229 25 H 0.264 0.736 26 H 0.136 0.864 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -14.900 1.320 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.197 3.803 10 H 0.066 0.934 11 O -0.265 6.265 12 C 0.328 3.672 13 O -0.407 6.407 14 C -0.204 4.204 15 C -0.083 4.083 16 C -0.105 4.105 17 C -0.172 4.172 18 C -0.015 4.015 19 O -0.307 6.307 20 C -0.015 4.015 21 C -0.186 4.186 22 C -0.132 4.132 23 C -0.160 4.160 24 C -0.266 4.266 25 H 0.074 0.926 26 H 0.153 0.847 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.094 -14.870 1.550 14.951 hybrid contribution 0.589 1.288 -0.313 1.451 sum 0.683 -13.582 1.237 13.655 Atomic orbital electron populations 1.70033 1.05740 1.27076 1.48088 1.24865 0.95014 0.99025 0.94546 0.86431 0.79393 0.82029 0.78828 1.20033 1.21111 1.20056 1.20883 0.93779 0.88501 1.53517 0.91423 1.20174 0.86115 0.80503 0.93511 0.93378 1.86596 1.49056 1.22201 1.68642 1.21393 0.85334 0.84677 0.75760 1.90670 1.22239 1.83224 1.44539 1.22209 1.00892 0.92093 1.05164 1.23661 0.97157 0.95885 0.91549 1.20900 0.93549 0.98164 0.97854 1.22002 0.96744 1.02740 0.95700 1.22583 0.95305 0.85077 0.98517 1.87877 1.86680 1.33148 1.23030 1.22522 0.94489 1.01796 0.82644 1.22253 0.97528 0.97301 1.01548 1.22593 0.92876 0.97292 1.00485 1.22357 0.95614 0.96705 1.01363 1.23267 1.09573 0.93002 1.00721 0.92596 0.84653 0.85529 0.86664 0.91908 0.89993 0.92596 0.89119 0.93009 0.89145 0.90964 0.91310 0.89439 0.89347 0.90855 0.91156 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.06 11.43 55.43 0.63 -23.43 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.63 8.88 -34.44 -0.31 -14.93 16 8 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.49 2.25 -27.88 -0.06 6.42 16 10 H 0.05 1.38 6.92 -51.93 -0.36 1.02 16 11 O -0.35 -8.18 9.85 -40.74 -0.40 -8.58 16 12 C 0.48 9.61 6.88 34.26 0.24 9.85 16 13 O -0.51 -10.78 9.73 -19.29 -0.19 -10.97 16 14 C -0.18 -2.75 10.12 -37.85 -0.38 -3.13 16 15 C -0.06 -0.79 8.82 -36.10 -0.32 -1.11 16 16 C -0.09 -1.15 1.71 -91.59 -0.16 -1.30 16 17 C -0.13 -1.74 5.19 -26.59 -0.14 -1.88 16 18 C 0.06 0.78 6.84 37.21 0.25 1.04 16 19 O -0.39 -5.11 10.77 -35.23 -0.38 -5.49 16 20 C 0.06 0.70 6.84 37.21 0.25 0.95 16 21 C -0.15 -1.61 5.41 -26.59 -0.14 -1.75 16 22 C -0.11 -2.76 4.47 -90.62 -0.41 -3.16 16 23 C -0.12 -2.80 9.04 -26.69 -0.24 -3.04 16 24 C -0.23 -4.82 9.81 -26.69 -0.26 -5.09 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.12 1.88 5.31 -51.93 -0.28 1.60 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.20 7.51 -51.93 -0.39 0.81 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.21 8.11 -51.92 -0.42 1.78 16 38 H 0.09 2.15 8.05 -51.93 -0.42 1.73 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.98 5.37 -51.93 -0.28 1.70 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -29.13 330.98 -8.47 -37.60 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.34 Total: 5.38 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.77 Total: -15.35 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.63 Total: -23.43 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.97 Total: -25.04 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.13 -8.47 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.392 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds