Wall clock time and date at job start Tue Mar 31 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47049 * 239.99301 * 3 2 1 5 5 H 1.48495 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47094 * 119.99574 * 3 2 1 7 7 C 1.37877 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99866 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46775 * 299.99425 * 9 7 2 11 11 O 1.45203 * 109.47212 * 179.97438 * 9 7 2 12 12 C 1.34792 * 117.00053 * 149.99607 * 11 9 7 13 13 O 1.21535 * 120.00174 * 359.97438 * 12 11 9 14 14 C 1.46951 * 120.00299 * 179.72426 * 12 11 9 15 15 C 1.33081 * 120.00353 * 186.96401 * 14 12 11 16 16 C 1.50694 * 120.00027 * 16.88597 * 15 14 12 17 17 C 1.53174 * 109.54551 * 252.97434 * 16 15 14 18 18 C 1.53093 * 109.16525 * 183.15144 * 17 16 15 19 19 O 1.42903 * 109.41507 * 57.61026 * 18 17 16 20 20 C 1.42902 * 114.09861 * 298.84342 * 19 18 17 21 21 C 1.53096 * 109.41602 * 61.15512 * 20 19 18 22 22 C 1.52995 * 109.47243 * 59.99204 * 9 7 2 23 23 C 1.52995 * 117.50198 * 248.74871 * 22 9 7 24 24 C 1.53005 * 117.49871 * 180.08543 * 22 9 7 25 25 H 0.97003 * 119.99703 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99421 * 6.95791 * 14 12 11 27 27 H 1.07998 * 119.99858 * 196.88559 * 15 14 12 28 28 H 1.09003 * 109.54471 * 13.24621 * 16 15 14 29 29 H 1.08996 * 109.52563 * 303.05918 * 17 16 15 30 30 H 1.09003 * 109.51803 * 63.24978 * 17 16 15 31 31 H 1.09003 * 109.47993 * 297.62728 * 18 17 16 32 32 H 1.09003 * 109.48050 * 177.59386 * 18 17 16 33 33 H 1.09005 * 109.48165 * 301.17760 * 20 19 18 34 34 H 1.08991 * 109.48360 * 181.13908 * 20 19 18 35 35 H 1.08995 * 109.52316 * 182.48675 * 21 20 19 36 36 H 1.08996 * 109.57150 * 62.32939 * 21 20 19 37 37 H 1.09007 * 115.54907 * 34.42477 * 22 9 7 38 38 H 1.08999 * 117.49989 * 0.02562 * 23 22 9 39 39 H 1.08999 * 117.49726 * 145.02699 * 23 22 9 40 40 H 1.08997 * 117.49897 * 214.98147 * 24 22 9 41 41 H 1.09001 * 117.49863 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 2.1946 -3.6028 0.0005 12 6 1.8017 -4.7438 0.6011 13 8 0.7008 -4.8142 1.1112 14 6 2.7023 -5.9045 0.6343 15 6 2.2666 -7.0717 1.1021 16 6 0.7872 -7.3236 1.2394 17 6 0.3976 -7.2940 2.7205 18 6 -1.0902 -7.6283 2.8556 19 8 -1.3448 -8.9068 2.2702 20 6 -1.0439 -8.9801 0.8751 21 6 0.4458 -8.7000 0.6604 22 6 0.3717 -2.5804 -1.2489 23 6 -1.1440 -2.5128 -1.0518 24 6 -0.4798 -3.8383 -1.4329 25 1 -0.4850 0.8401 -0.0004 26 1 3.7178 -5.8103 0.2789 27 1 2.9733 -7.8385 1.3834 28 1 0.2347 -6.5540 0.7002 29 1 0.9874 -8.0298 3.2671 30 1 0.5860 -6.3002 3.1268 31 1 -1.6813 -6.8695 2.3429 32 1 -1.3634 -7.6507 3.9106 33 1 -1.6344 -8.2389 0.3364 34 1 -1.2838 -9.9762 0.5034 35 1 0.6686 -8.7119 -0.4064 36 1 1.0373 -9.4642 1.1646 37 1 0.7840 -2.1162 -2.1449 38 1 -1.5148 -2.4099 -0.0320 39 1 -1.7289 -2.0045 -1.8182 40 1 -0.6281 -4.2012 -2.4499 41 1 -0.4132 -4.6080 -0.6641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:33 Heat of formation + Delta-G solvation = -110.570874 kcal Electronic energy + Delta-G solvation = -22742.645276 eV Core-core repulsion = 19395.202081 eV Total energy + Delta-G solvation = -3347.443195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44817 -40.21299 -38.37840 -36.82625 -35.84576 -34.70858 -32.59601 -31.99844 -29.90792 -26.69445 -25.30885 -24.46139 -23.70289 -23.08513 -21.35800 -21.24137 -20.46034 -18.75256 -18.43076 -17.46741 -16.96251 -16.90620 -16.64879 -16.17832 -15.84680 -15.71718 -15.37022 -14.78700 -14.71427 -14.42391 -14.17178 -13.54930 -13.33127 -13.22696 -13.02068 -12.94411 -12.80128 -12.37762 -12.28644 -12.23812 -12.13409 -11.87019 -11.79640 -11.34460 -11.16904 -10.96663 -10.74950 -10.58272 -10.54779 -10.44574 -10.16615 -8.21926 -6.38746 0.22528 1.41537 1.44214 1.51838 2.09900 2.15644 2.46843 2.95356 3.05528 3.24356 3.66201 3.86163 3.93985 4.05409 4.10910 4.11755 4.29867 4.34299 4.38603 4.44437 4.51384 4.60197 4.69018 4.74055 4.77725 4.79667 4.90346 4.97486 5.04058 5.10321 5.16986 5.24998 5.26758 5.30565 5.38822 5.47181 5.53566 5.70301 5.89468 6.21053 6.24174 6.65016 7.09171 7.32285 8.84037 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.004415 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.868919 B = 6339.909970 C = 6649.082799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.559 4.559 8 H 0.061 0.939 9 C 0.257 3.743 10 H 0.008 0.992 11 O -0.366 6.366 12 C 0.469 3.531 13 O -0.533 6.533 14 C -0.211 4.211 15 C -0.025 4.025 16 C -0.096 4.096 17 C -0.130 4.130 18 C 0.063 3.937 19 O -0.397 6.397 20 C 0.055 3.945 21 C -0.140 4.140 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.196 4.196 25 H 0.267 0.733 26 H 0.159 0.841 27 H 0.175 0.825 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.039 0.961 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -16.820 0.950 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.079 0.921 9 C 0.204 3.796 10 H 0.026 0.974 11 O -0.283 6.283 12 C 0.318 3.682 13 O -0.427 6.427 14 C -0.230 4.230 15 C -0.043 4.043 16 C -0.114 4.114 17 C -0.167 4.167 18 C -0.014 4.014 19 O -0.316 6.316 20 C -0.021 4.021 21 C -0.177 4.177 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.233 4.233 25 H 0.076 0.924 26 H 0.176 0.824 27 H 0.192 0.808 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.165 -16.815 1.180 16.896 hybrid contribution 0.180 1.759 -0.135 1.773 sum 1.346 -15.056 1.045 15.152 Atomic orbital electron populations 1.70148 1.06972 1.27964 1.47963 1.25687 0.95925 1.02206 0.93705 0.85404 0.78244 0.77700 0.79039 1.19244 1.20276 1.19629 1.21177 0.93717 0.90010 1.54747 0.92099 1.19753 0.86095 0.81275 0.92508 0.97444 1.86573 1.48786 1.22991 1.69939 1.22407 0.86052 0.84832 0.74895 1.90676 1.23394 1.83366 1.45225 1.22227 1.01069 0.90920 1.08746 1.24114 0.97334 0.95577 0.87278 1.20909 0.93915 0.98900 0.97672 1.21936 0.97216 1.01898 0.95684 1.22558 0.94968 0.84701 0.99168 1.87868 1.86873 1.32796 1.24075 1.22726 0.94828 1.02947 0.81642 1.22207 0.97350 0.95812 1.02348 1.22388 0.93303 1.00014 0.99347 1.22265 0.94813 0.98355 1.00529 1.23252 1.06255 0.91693 1.02121 0.92414 0.82366 0.80757 0.90226 0.89701 0.92512 0.94721 0.87667 0.94249 0.86551 0.89765 0.89162 0.90593 0.91679 0.89471 0.88138 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.55 11.43 21.45 0.25 -50.31 16 2 C 0.03 1.48 5.30 84.66 0.45 1.93 16 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.56 -32.06 8.88 25.60 0.23 -31.84 16 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.26 14.03 2.25 29.85 0.07 14.09 16 10 H 0.01 0.48 6.92 -2.39 -0.02 0.46 16 11 O -0.37 -17.86 9.85 -57.03 -0.56 -18.42 16 12 C 0.47 19.26 6.88 70.10 0.48 19.74 16 13 O -0.53 -23.45 9.73 19.72 0.19 -23.26 16 14 C -0.21 -6.00 10.12 23.40 0.24 -5.76 16 15 C -0.03 -0.55 8.82 24.53 0.22 -0.33 16 16 C -0.10 -2.37 1.71 -11.42 -0.02 -2.39 16 17 C -0.13 -3.22 5.19 30.68 0.16 -3.06 16 18 C 0.06 1.57 6.84 72.01 0.49 2.06 16 19 O -0.40 -9.79 10.77 -148.98 -1.60 -11.39 16 20 C 0.05 1.12 6.84 72.01 0.49 1.61 16 21 C -0.14 -2.58 5.41 30.69 0.17 -2.42 16 22 C -0.13 -6.59 4.47 -10.80 -0.05 -6.64 16 23 C -0.12 -5.72 9.04 30.62 0.28 -5.44 16 24 C -0.20 -8.34 9.81 30.62 0.30 -8.04 16 25 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.08 2.62 5.31 -2.39 -0.01 2.61 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.69 7.51 -2.39 -0.02 1.68 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 3.94 8.11 -2.38 -0.02 3.92 16 38 H 0.06 3.33 8.05 -2.39 -0.02 3.31 16 39 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 41 H 0.09 3.86 5.37 -2.39 -0.01 3.84 16 Total: -1.00 -66.26 330.98 4.80 -61.46 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.01 Total: 23.20 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.50 Total: -26.48 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.25 Total: -50.31 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.97 Total: -53.08 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.26 4.80 -61.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.114 kcal (2) G-P(sol) polarization free energy of solvation -66.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds