Wall clock time and date at job start Tue Mar 31 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00633 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00348 * 3 2 1 7 7 C 1.38950 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99459 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47128 * 179.72554 * 12 10 9 14 14 C 1.34778 * 119.99700 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50709 * 120.00069 * 180.02562 * 14 13 12 17 17 C 1.52995 * 112.84879 * 180.02562 * 16 14 13 18 18 C 1.53777 * 113.61860 * 48.80307 * 17 16 14 19 19 C 1.53960 * 87.01928 * 220.04920 * 18 17 16 20 20 C 1.53778 * 87.11285 * 25.36141 * 19 18 17 21 21 C 1.53777 * 113.61267 * 48.80288 * 16 14 13 22 22 C 1.53953 * 87.01924 * 220.05010 * 21 16 14 23 23 C 1.53775 * 87.11119 * 25.36444 * 22 21 16 24 24 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 27 27 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 28 28 H 0.97005 * 120.00530 * 0.02562 * 13 12 10 29 29 H 1.09005 * 112.84628 * 180.02562 * 17 16 14 30 30 H 1.09003 * 113.61169 * 334.56544 * 18 17 16 31 31 H 1.08996 * 113.61649 * 105.47022 * 18 17 16 32 32 H 1.09007 * 113.53221 * 270.80673 * 19 18 17 33 33 H 1.08998 * 113.74240 * 139.94497 * 19 18 17 34 34 H 1.08998 * 113.61128 * 220.09531 * 20 19 18 35 35 H 1.08998 * 113.69161 * 89.19857 * 20 19 18 36 36 H 1.09007 * 113.61633 * 334.56986 * 21 16 14 37 37 H 1.09002 * 113.61345 * 105.47055 * 21 16 14 38 38 H 1.09003 * 113.53670 * 270.80955 * 22 21 16 39 39 H 1.09001 * 113.74472 * 139.94331 * 22 21 16 40 40 H 1.09003 * 113.61639 * 220.08811 * 23 22 21 41 41 H 1.09006 * 113.61631 * 89.18432 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3705 -0.0011 11 8 3.4471 -3.4210 0.0044 12 6 5.5607 -2.3706 -0.0011 13 7 6.0489 -3.7518 0.0055 14 6 7.3740 -3.9981 0.0062 15 8 8.1621 -3.0763 0.0018 16 6 7.8764 -5.4189 0.0124 17 6 9.4037 -5.5091 0.0129 18 6 10.0733 -4.6144 1.0693 19 6 11.1405 -4.2958 0.0064 20 6 10.0734 -4.6236 -1.0512 21 6 7.2064 -6.3138 -1.0435 22 6 7.1920 -7.4240 0.0230 23 6 7.2070 -6.3043 1.0769 24 1 -0.4851 0.8401 0.0004 25 1 3.8647 -0.3633 -0.0007 26 1 5.9239 -1.8610 -0.8935 27 1 5.9240 -1.8525 0.8864 28 1 5.4186 -4.4891 0.0087 29 1 9.7670 -6.5368 0.0170 30 1 9.4714 -3.7519 1.3559 31 1 10.4602 -5.1654 1.9264 32 1 11.9798 -4.9914 0.0101 33 1 11.4557 -3.2524 -0.0001 34 1 10.4604 -5.1822 -1.9034 35 1 9.4710 -3.7645 -1.3465 36 1 6.2120 -5.9755 -1.3352 37 1 7.8464 -6.5356 -1.8975 38 1 8.0929 -8.0375 0.0248 39 1 6.2767 -8.0160 0.0280 40 1 7.8476 -6.5184 1.9324 41 1 6.2129 -5.9633 1.3661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436173562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:53 Heat of formation + Delta-G solvation = -30.458673 kcal Electronic energy + Delta-G solvation = -22332.356082 eV Core-core repulsion = 19020.679563 eV Total energy + Delta-G solvation = -3311.676518 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21581 -38.79140 -37.62814 -37.20715 -34.45963 -33.66387 -31.82562 -28.59367 -27.25545 -26.29696 -25.02376 -24.72820 -23.46612 -20.93763 -19.93983 -19.60384 -19.08459 -18.42026 -16.88786 -16.10672 -15.72372 -15.41129 -15.33854 -15.00489 -14.82434 -14.16937 -14.10790 -13.83144 -13.16781 -13.11125 -12.59536 -12.47048 -12.44498 -12.38802 -12.20534 -11.85414 -11.66378 -11.39331 -11.24280 -11.16451 -10.66477 -10.62869 -10.53809 -10.08589 -10.00771 -9.94136 -9.72223 -9.19246 -8.84320 -8.79765 -8.32924 -6.43056 -3.95716 2.69690 2.97598 3.02281 3.10424 3.28701 3.53637 4.01435 4.32618 4.37702 4.42795 4.54388 4.61873 4.81251 4.91146 4.98717 5.07171 5.11670 5.18360 5.39427 5.53682 5.60070 5.64062 5.72373 5.76145 5.77854 5.79151 5.79856 5.81097 5.92182 5.94746 6.02196 6.19764 6.22856 6.34480 6.54405 6.74090 7.41736 7.75500 7.98095 8.37729 8.45489 8.79320 9.27417 9.60845 10.69078 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.003877 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.839330 B = 7219.586519 C = 7957.550963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.707 5.707 14 C 0.526 3.474 15 O -0.541 6.541 16 C -0.092 4.092 17 C -0.076 4.076 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.127 4.127 24 H 0.276 0.724 25 H 0.374 0.626 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.411 0.589 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.671 -9.803 0.012 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.223 3.777 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.361 5.361 14 C 0.313 3.687 15 O -0.420 6.420 16 C -0.095 4.095 17 C -0.095 4.095 18 C -0.173 4.173 19 C -0.175 4.175 20 C -0.173 4.173 21 C -0.165 4.165 22 C -0.174 4.174 23 C -0.165 4.165 24 H 0.086 0.914 25 H 0.207 0.793 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.249 0.751 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.566 -9.699 0.012 20.947 hybrid contribution 0.158 1.113 0.016 1.125 sum 18.724 -8.586 0.028 20.599 Atomic orbital electron populations 1.69616 1.05718 1.27836 1.48093 1.25062 0.95527 0.98163 0.97102 0.86675 0.79908 0.83780 0.79151 1.19375 1.19945 1.19256 1.19443 0.78965 0.96804 1.48722 0.86079 1.42125 1.07708 1.06141 1.65364 1.19656 0.88093 0.84882 0.85050 1.90538 1.69218 1.30900 1.55711 1.20964 0.93723 0.84226 1.03243 1.45733 1.07207 1.08935 1.74204 1.20296 0.81803 0.90896 0.75712 1.90580 1.54857 1.46574 1.49943 1.21985 0.96672 0.91127 0.99724 1.22134 0.89798 0.98779 0.98745 1.23109 0.97968 1.00492 0.95701 1.22686 0.96311 1.01164 0.97316 1.23077 0.97973 1.00515 0.95705 1.23011 1.01140 0.95679 0.96623 1.22854 1.02473 0.96291 0.95829 1.22980 1.01150 0.95710 0.96622 0.91360 0.79257 0.89789 0.89795 0.75075 0.88984 0.87971 0.92732 0.91219 0.91681 0.92754 0.87971 0.89267 0.90615 0.89988 0.90805 0.90626 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 13.96 55.50 0.77 -24.06 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 9 N -0.58 -13.30 5.09 -10.96 -0.06 -13.35 16 10 C 0.44 9.51 7.85 -10.98 -0.09 9.42 16 11 O -0.58 -14.45 15.24 5.54 0.08 -14.37 16 12 C 0.11 1.81 6.15 -5.19 -0.03 1.78 16 13 N -0.71 -11.02 5.12 -61.47 -0.31 -11.34 16 14 C 0.53 7.67 6.46 -10.98 -0.07 7.60 16 15 O -0.54 -8.95 11.56 5.56 0.06 -8.89 16 16 C -0.09 -1.04 0.79 -154.85 -0.12 -1.17 16 17 C -0.08 -0.81 3.14 -89.81 -0.28 -1.09 16 18 C -0.14 -1.55 7.25 -25.83 -0.19 -1.73 16 19 C -0.14 -1.47 8.09 -25.83 -0.21 -1.68 16 20 C -0.14 -1.54 7.24 -25.92 -0.19 -1.73 16 21 C -0.13 -1.28 7.10 -25.83 -0.18 -1.47 16 22 C -0.14 -1.18 7.77 -25.83 -0.20 -1.39 16 23 C -0.13 -1.28 7.09 -25.92 -0.18 -1.47 16 24 H 0.28 7.22 8.31 -40.82 -0.34 6.89 16 25 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.41 6.43 5.76 -40.82 -0.23 6.20 16 29 H 0.09 0.83 7.56 -51.93 -0.39 0.44 16 30 H 0.10 1.42 5.67 -51.93 -0.29 1.13 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.42 5.67 -51.93 -0.29 1.13 16 36 H 0.09 0.98 7.22 -51.93 -0.37 0.61 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.28 16 38 H 0.08 0.61 7.72 -51.93 -0.40 0.21 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.09 0.99 7.22 -51.93 -0.38 0.61 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -30.48 325.50 -7.21 -37.69 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -5.96 Total: 15.67 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.99 Total: -0.46 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.40 Total: -48.75 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.15 Total: -23.25 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.48 -7.21 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436173562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.233 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds