Wall clock time and date at job start Tue Mar 31 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00633 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00348 * 3 2 1 7 7 C 1.38950 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99459 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47128 * 179.72554 * 12 10 9 14 14 C 1.34778 * 119.99700 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50709 * 120.00069 * 180.02562 * 14 13 12 17 17 C 1.52995 * 112.84879 * 180.02562 * 16 14 13 18 18 C 1.53777 * 113.61860 * 48.80307 * 17 16 14 19 19 C 1.53960 * 87.01928 * 220.04920 * 18 17 16 20 20 C 1.53778 * 87.11285 * 25.36141 * 19 18 17 21 21 C 1.53777 * 113.61267 * 48.80288 * 16 14 13 22 22 C 1.53953 * 87.01924 * 220.05010 * 21 16 14 23 23 C 1.53775 * 87.11119 * 25.36444 * 22 21 16 24 24 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 27 27 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 28 28 H 0.97005 * 120.00530 * 0.02562 * 13 12 10 29 29 H 1.09005 * 112.84628 * 180.02562 * 17 16 14 30 30 H 1.09003 * 113.61169 * 334.56544 * 18 17 16 31 31 H 1.08996 * 113.61649 * 105.47022 * 18 17 16 32 32 H 1.09007 * 113.53221 * 270.80673 * 19 18 17 33 33 H 1.08998 * 113.74240 * 139.94497 * 19 18 17 34 34 H 1.08998 * 113.61128 * 220.09531 * 20 19 18 35 35 H 1.08998 * 113.69161 * 89.19857 * 20 19 18 36 36 H 1.09007 * 113.61633 * 334.56986 * 21 16 14 37 37 H 1.09002 * 113.61345 * 105.47055 * 21 16 14 38 38 H 1.09003 * 113.53670 * 270.80955 * 22 21 16 39 39 H 1.09001 * 113.74472 * 139.94331 * 22 21 16 40 40 H 1.09003 * 113.61639 * 220.08811 * 23 22 21 41 41 H 1.09006 * 113.61631 * 89.18432 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3705 -0.0011 11 8 3.4471 -3.4210 0.0044 12 6 5.5607 -2.3706 -0.0011 13 7 6.0489 -3.7518 0.0055 14 6 7.3740 -3.9981 0.0062 15 8 8.1621 -3.0763 0.0018 16 6 7.8764 -5.4189 0.0124 17 6 9.4037 -5.5091 0.0129 18 6 10.0733 -4.6144 1.0693 19 6 11.1405 -4.2958 0.0064 20 6 10.0734 -4.6236 -1.0512 21 6 7.2064 -6.3138 -1.0435 22 6 7.1920 -7.4240 0.0230 23 6 7.2070 -6.3043 1.0769 24 1 -0.4851 0.8401 0.0004 25 1 3.8647 -0.3633 -0.0007 26 1 5.9239 -1.8610 -0.8935 27 1 5.9240 -1.8525 0.8864 28 1 5.4186 -4.4891 0.0087 29 1 9.7670 -6.5368 0.0170 30 1 9.4714 -3.7519 1.3559 31 1 10.4602 -5.1654 1.9264 32 1 11.9798 -4.9914 0.0101 33 1 11.4557 -3.2524 -0.0001 34 1 10.4604 -5.1822 -1.9034 35 1 9.4710 -3.7645 -1.3465 36 1 6.2120 -5.9755 -1.3352 37 1 7.8464 -6.5356 -1.8975 38 1 8.0929 -8.0375 0.0248 39 1 6.2767 -8.0160 0.0280 40 1 7.8476 -6.5184 1.9324 41 1 6.2129 -5.9633 1.3661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436173562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:52 Heat of formation + Delta-G solvation = -51.053900 kcal Electronic energy + Delta-G solvation = -22333.249158 eV Core-core repulsion = 19020.679563 eV Total energy + Delta-G solvation = -3312.569594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20088 -40.48677 -38.84670 -38.06080 -36.26467 -35.13973 -33.85347 -29.92763 -28.34156 -27.12106 -26.41910 -25.86196 -24.55095 -21.98741 -21.51861 -20.80788 -20.48250 -19.89144 -18.07014 -17.49132 -17.06450 -16.78427 -16.69509 -16.12431 -16.10047 -15.62094 -15.39198 -14.89996 -14.70889 -14.31365 -14.06893 -14.02934 -13.77183 -13.35960 -13.29647 -13.01387 -12.75753 -12.66618 -12.46913 -12.22563 -12.02359 -11.89995 -11.60429 -11.41693 -11.40429 -10.83398 -10.77933 -10.67889 -10.35319 -10.26234 -10.10534 -8.47575 -6.09657 1.29027 1.32014 1.41916 1.57112 1.77322 2.03478 2.18533 2.85599 3.08591 3.45880 3.53357 3.61546 3.87063 3.87313 3.99237 4.06813 4.08922 4.24858 4.31985 4.39577 4.40392 4.64871 4.78149 4.78662 4.91915 4.96167 5.02896 5.11344 5.11550 5.13300 5.18599 5.25685 5.27533 5.45961 5.48219 5.53305 5.82656 5.86571 6.46093 6.53368 6.76031 7.19862 7.28775 7.75537 8.68878 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.003877 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.839330 B = 7219.586519 C = 7957.550963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.234 1.234 7 C -0.333 4.333 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.444 3.556 11 O -0.614 6.614 12 C 0.118 3.882 13 N -0.712 5.712 14 C 0.523 3.477 15 O -0.560 6.560 16 C -0.093 4.093 17 C -0.068 4.068 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.128 4.128 24 H 0.282 0.718 25 H 0.391 0.609 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.410 0.590 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.760 -9.924 0.049 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.158 1.158 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.009 4.009 13 N -0.366 5.366 14 C 0.312 3.688 15 O -0.440 6.440 16 C -0.096 4.096 17 C -0.086 4.086 18 C -0.177 4.177 19 C -0.170 4.170 20 C -0.177 4.177 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.166 4.166 24 H 0.091 0.909 25 H 0.227 0.773 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.248 0.752 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.682 -9.836 0.050 23.809 hybrid contribution -0.822 1.047 0.000 1.331 sum 20.861 -8.789 0.050 22.637 Atomic orbital electron populations 1.69776 1.08013 1.29486 1.49179 1.26050 0.96417 1.02536 0.95667 0.85452 0.79523 0.77108 0.80081 1.18059 1.19714 1.15775 1.19035 0.80952 0.95296 1.50868 0.91831 1.41934 1.06160 1.07414 1.66239 1.20524 0.90082 0.83877 0.82356 1.90525 1.70769 1.32291 1.56398 1.20851 0.89530 0.85734 1.04829 1.45817 1.07820 1.08166 1.74831 1.20942 0.80938 0.92281 0.74670 1.90584 1.55094 1.47640 1.50654 1.22106 0.97461 0.88956 1.01083 1.22199 0.88842 0.99836 0.97713 1.23038 0.98096 0.99886 0.96686 1.22711 0.96677 1.01099 0.96556 1.23005 0.98098 0.99923 0.96677 1.23019 1.00415 0.95946 0.97190 1.22846 1.03796 0.95642 0.93760 1.22988 1.00423 0.95999 0.97170 0.90875 0.77281 0.88033 0.88125 0.75188 0.86280 0.90887 0.91201 0.88929 0.92876 0.91224 0.90878 0.90751 0.89473 0.87750 0.90389 0.89489 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 13.96 21.66 0.30 -54.00 16 2 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 3 Si 0.96 38.16 27.74 68.60 1.90 40.07 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 7 C -0.33 -18.91 10.16 84.04 0.85 -18.06 16 8 H 0.06 4.27 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -26.67 5.09 -306.98 -1.56 -28.23 16 10 C 0.44 19.45 7.85 87.66 0.69 20.14 16 11 O -0.61 -31.66 15.24 -3.08 -0.05 -31.71 16 12 C 0.12 3.91 6.15 85.64 0.53 4.44 16 13 N -0.71 -21.92 5.12 -466.78 -2.39 -24.31 16 14 C 0.52 14.84 6.46 87.66 0.57 15.40 16 15 O -0.56 -18.19 11.56 -3.03 -0.04 -18.23 16 16 C -0.09 -1.95 0.79 -52.40 -0.04 -1.99 16 17 C -0.07 -1.25 3.14 -10.27 -0.03 -1.28 16 18 C -0.14 -2.91 7.25 31.18 0.23 -2.69 16 19 C -0.13 -2.56 8.09 31.18 0.25 -2.31 16 20 C -0.14 -2.91 7.24 31.12 0.23 -2.68 16 21 C -0.13 -2.35 7.10 31.18 0.22 -2.13 16 22 C -0.12 -1.79 7.77 31.18 0.24 -1.54 16 23 C -0.13 -2.35 7.09 31.12 0.22 -2.13 16 24 H 0.28 15.09 8.31 -92.70 -0.77 14.32 16 25 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 26 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.41 12.95 5.76 -92.70 -0.53 12.42 16 29 H 0.12 1.62 7.56 -2.38 -0.02 1.60 16 30 H 0.07 1.98 5.67 -2.39 -0.01 1.97 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.98 5.67 -2.39 -0.01 1.97 16 36 H 0.07 1.60 7.22 -2.38 -0.02 1.58 16 37 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.10 1.09 7.72 -2.39 -0.02 1.07 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 41 H 0.07 1.60 7.22 -2.38 -0.02 1.58 16 Total: -1.00 -69.87 325.50 2.52 -67.35 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.07 Total: 43.79 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 4.42 Total: 5.27 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.65 Total: -106.54 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.08 Total: -49.93 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.07 kcal Total: -69.87 2.52 -67.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436173562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.295 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds