Wall clock time and date at job start Tue Mar 31 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48504 * 109.47186 * 239.99847 * 3 2 1 5 5 H 1.48502 * 109.47374 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47097 * 120.00218 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21612 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.47103 * 120.00098 * 180.02562 * 14 13 12 17 17 C 1.32082 * 118.87762 * 179.73361 * 16 14 13 18 18 C 1.50270 * 122.57783 * 180.10995 * 17 16 14 19 19 O 1.42896 * 110.14778 * 344.83101 * 18 17 16 20 20 C 1.43271 * 113.09517 * 50.32212 * 19 18 17 21 21 C 1.50418 * 118.87649 * 0.02562 * 16 14 13 22 22 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 23 23 C 1.52995 * 117.49555 * 128.74822 * 22 10 9 24 24 C 1.52995 * 117.49792 * 60.09061 * 22 10 9 25 25 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 28 28 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.07995 * 118.71232 * 0.37397 * 17 16 14 31 31 H 1.09004 * 109.51024 * 224.51894 * 18 17 16 32 32 H 1.08996 * 109.07072 * 104.87539 * 18 17 16 33 33 H 1.09002 * 109.63356 * 171.47165 * 20 19 18 34 34 H 1.08995 * 109.64113 * 50.85782 * 20 19 18 35 35 H 1.09004 * 109.45492 * 283.37406 * 21 16 14 36 36 H 1.09007 * 109.45850 * 43.30559 * 21 16 14 37 37 H 1.08997 * 115.54853 * 274.41548 * 22 10 9 38 38 H 1.08998 * 117.49984 * 359.97438 * 23 22 10 39 39 H 1.09006 * 117.49830 * 145.02021 * 23 22 10 40 40 H 1.09000 * 117.49832 * 214.98051 * 24 22 10 41 41 H 1.09001 * 117.49910 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3953 -6.2267 2.2259 16 6 -0.5034 -4.7292 4.0084 17 6 -1.2804 -5.5403 4.7033 18 6 -1.7888 -5.1959 6.0748 19 8 -1.0475 -4.0994 6.6135 20 6 -0.9560 -2.9874 5.7147 21 6 -0.0672 -3.3893 4.5347 22 6 2.4221 -4.0355 -1.4376 23 6 3.8823 -4.3890 -1.7268 24 6 3.3029 -3.0621 -2.2233 25 1 -0.4850 0.8400 0.0004 26 1 0.3557 -2.3880 -0.0005 27 1 0.3135 -4.9201 -0.0291 28 1 1.7560 -5.6746 0.6908 29 1 1.0066 -3.4751 2.2963 30 1 -1.5579 -6.4901 4.2706 31 1 -1.6828 -6.0605 6.7302 32 1 -2.8414 -4.9216 6.0060 33 1 -0.5158 -2.1343 6.2312 34 1 -1.9502 -2.7266 5.3520 35 1 0.9697 -3.4492 4.8655 36 1 -0.1533 -2.6433 3.7445 37 1 1.6542 -4.5774 -1.9897 38 1 4.5838 -4.3513 -0.8934 39 1 4.0751 -5.1632 -2.4696 40 1 3.1147 -2.9637 -3.2924 41 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480014377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:00 Heat of formation + Delta-G solvation = -33.958508 kcal Electronic energy + Delta-G solvation = -22150.639309 eV Core-core repulsion = 18838.811027 eV Total energy + Delta-G solvation = -3311.828283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05373 -38.67083 -37.52940 -34.71940 -33.75820 -33.37540 -31.26310 -30.78486 -28.21029 -26.06645 -24.12080 -23.47495 -22.47521 -21.72436 -20.76710 -19.74050 -18.37277 -17.63708 -17.11019 -16.41297 -15.57459 -15.35008 -15.14137 -15.07317 -14.73259 -14.35187 -13.97998 -13.63078 -13.47508 -13.20635 -13.00540 -12.71192 -12.47612 -12.07101 -11.56368 -11.39865 -11.18758 -10.90971 -10.88561 -10.85110 -10.74398 -10.19642 -10.11934 -9.96178 -9.65347 -9.43202 -9.31217 -9.12893 -9.01964 -8.62522 -7.09753 -5.86078 -3.15882 1.41270 3.36285 3.41861 3.43024 3.45855 3.51437 3.82040 4.38175 4.55817 4.67601 4.75420 4.82315 5.14362 5.19192 5.19883 5.25381 5.42280 5.48681 5.52322 5.57099 5.65543 5.70175 5.72662 5.87236 5.89298 5.97654 6.04337 6.14792 6.27776 6.37033 6.51125 6.52193 6.57314 6.74327 6.88049 6.95065 6.96025 7.60244 7.91602 8.30645 8.53005 9.42883 9.96661 10.33152 11.35565 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.005284 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.448615 B = 5297.267792 C = 6905.304193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.055 0.945 12 C 0.118 3.882 13 N -0.705 5.705 14 C 0.546 3.454 15 O -0.558 6.558 16 C -0.153 4.153 17 C -0.128 4.128 18 C 0.087 3.913 19 O -0.380 6.380 20 C 0.061 3.939 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.156 4.156 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.411 0.589 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -8.311 8.182 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.007 4.007 13 N -0.356 5.356 14 C 0.334 3.666 15 O -0.438 6.438 16 C -0.156 4.156 17 C -0.148 4.148 18 C 0.011 3.989 19 O -0.299 6.299 20 C -0.016 4.016 21 C -0.162 4.162 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.193 4.193 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.249 0.751 30 H 0.151 0.849 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.011 -8.879 8.041 11.979 hybrid contribution 0.173 1.361 -0.525 1.469 sum 0.184 -7.519 7.516 10.632 Atomic orbital electron populations 1.69649 1.05045 1.25839 1.57163 1.24712 0.95429 0.97542 1.02800 0.86343 0.78594 0.83789 0.77880 1.21273 1.21751 1.21277 1.19113 0.90804 0.83834 1.43181 0.91184 1.42445 1.05801 0.99391 1.88114 1.20063 0.94333 0.86122 0.91292 0.92678 1.21618 0.98635 0.97586 0.82817 1.45917 1.50129 1.21778 1.17803 1.18388 0.78674 0.84278 0.85268 1.90738 1.57755 1.22750 1.72589 1.20950 1.01891 0.97866 0.94937 1.23616 0.95346 0.99752 0.96063 1.21542 0.95103 0.90411 0.91845 1.88109 1.75041 1.25527 1.41189 1.22665 0.99317 0.89014 0.90558 1.21131 1.01222 0.94563 0.99289 1.23021 0.92194 1.03115 0.99775 1.22963 0.97253 0.99823 1.03358 1.22778 1.03359 0.94032 0.99101 0.93410 0.78063 0.91732 0.91594 0.75147 0.84869 0.87305 0.91186 0.87943 0.92348 0.89381 0.88463 0.89135 0.89538 0.90072 0.90220 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.18 13.06 55.49 0.72 -25.46 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -5.93 8.63 -15.06 -0.13 -6.06 16 8 H 0.07 1.71 6.91 -52.48 -0.36 1.34 16 9 N -0.72 -16.03 4.54 -53.42 -0.24 -16.28 16 10 C 0.19 3.53 2.70 -67.92 -0.18 3.35 16 11 H 0.06 1.02 7.84 -51.93 -0.41 0.62 16 12 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 13 N -0.71 -11.91 5.33 -61.49 -0.33 -12.24 16 14 C 0.55 9.43 7.73 -12.66 -0.10 9.33 16 15 O -0.56 -11.12 16.06 5.27 0.08 -11.03 16 16 C -0.15 -2.22 5.86 -103.09 -0.60 -2.82 16 17 C -0.13 -1.63 9.58 -36.44 -0.35 -1.97 16 18 C 0.09 0.89 7.04 35.80 0.25 1.14 16 19 O -0.38 -4.62 10.83 -35.23 -0.38 -5.00 16 20 C 0.06 0.69 6.88 37.21 0.26 0.95 16 21 C -0.12 -1.60 5.29 -27.97 -0.15 -1.74 16 22 C -0.16 -2.75 5.36 -90.62 -0.49 -3.24 16 23 C -0.20 -2.95 10.18 -26.70 -0.27 -3.22 16 24 C -0.16 -2.73 9.78 -26.70 -0.26 -2.99 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.39 9.48 7.80 -40.82 -0.32 9.17 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.41 6.92 6.44 -40.82 -0.26 6.66 16 30 H 0.13 1.72 7.29 -52.49 -0.38 1.34 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.34 7.31 -51.93 -0.38 0.96 16 37 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 38 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.10 2.05 6.23 -51.93 -0.32 1.73 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -29.43 337.95 -8.43 -37.86 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -6.21 Total: 16.57 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.14 Total: -5.59 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.15 Total: -53.97 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.30 Total: -16.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.43 -8.43 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480014377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.900 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds