Wall clock time and date at job start Tue Mar 31 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48504 * 109.47186 * 239.99847 * 3 2 1 5 5 H 1.48502 * 109.47374 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47097 * 120.00218 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21612 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.47103 * 120.00098 * 180.02562 * 14 13 12 17 17 C 1.32082 * 118.87762 * 179.73361 * 16 14 13 18 18 C 1.50270 * 122.57783 * 180.10995 * 17 16 14 19 19 O 1.42896 * 110.14778 * 344.83101 * 18 17 16 20 20 C 1.43271 * 113.09517 * 50.32212 * 19 18 17 21 21 C 1.50418 * 118.87649 * 0.02562 * 16 14 13 22 22 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 23 23 C 1.52995 * 117.49555 * 128.74822 * 22 10 9 24 24 C 1.52995 * 117.49792 * 60.09061 * 22 10 9 25 25 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 28 28 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.07995 * 118.71232 * 0.37397 * 17 16 14 31 31 H 1.09004 * 109.51024 * 224.51894 * 18 17 16 32 32 H 1.08996 * 109.07072 * 104.87539 * 18 17 16 33 33 H 1.09002 * 109.63356 * 171.47165 * 20 19 18 34 34 H 1.08995 * 109.64113 * 50.85782 * 20 19 18 35 35 H 1.09004 * 109.45492 * 283.37406 * 21 16 14 36 36 H 1.09007 * 109.45850 * 43.30559 * 21 16 14 37 37 H 1.08997 * 115.54853 * 274.41548 * 22 10 9 38 38 H 1.08998 * 117.49984 * 359.97438 * 23 22 10 39 39 H 1.09006 * 117.49830 * 145.02021 * 23 22 10 40 40 H 1.09000 * 117.49832 * 214.98051 * 24 22 10 41 41 H 1.09001 * 117.49910 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3953 -6.2267 2.2259 16 6 -0.5034 -4.7292 4.0084 17 6 -1.2804 -5.5403 4.7033 18 6 -1.7888 -5.1959 6.0748 19 8 -1.0475 -4.0994 6.6135 20 6 -0.9560 -2.9874 5.7147 21 6 -0.0672 -3.3893 4.5347 22 6 2.4221 -4.0355 -1.4376 23 6 3.8823 -4.3890 -1.7268 24 6 3.3029 -3.0621 -2.2233 25 1 -0.4850 0.8400 0.0004 26 1 0.3557 -2.3880 -0.0005 27 1 0.3135 -4.9201 -0.0291 28 1 1.7560 -5.6746 0.6908 29 1 1.0066 -3.4751 2.2963 30 1 -1.5579 -6.4901 4.2706 31 1 -1.6828 -6.0605 6.7302 32 1 -2.8414 -4.9216 6.0060 33 1 -0.5158 -2.1343 6.2312 34 1 -1.9502 -2.7266 5.3520 35 1 0.9697 -3.4492 4.8655 36 1 -0.1533 -2.6433 3.7445 37 1 1.6542 -4.5774 -1.9897 38 1 4.5838 -4.3513 -0.8934 39 1 4.0751 -5.1632 -2.4696 40 1 3.1147 -2.9637 -3.2924 41 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480014377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:59 Heat of formation + Delta-G solvation = -53.307695 kcal Electronic energy + Delta-G solvation = -22151.478353 eV Core-core repulsion = 18838.811027 eV Total energy + Delta-G solvation = -3312.667326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25917 -39.79854 -38.96251 -36.15982 -35.22405 -34.73783 -32.73515 -31.99201 -29.81592 -27.16468 -25.62179 -24.77666 -23.84303 -23.03153 -22.08825 -21.17551 -19.70581 -19.03301 -18.54179 -17.48647 -16.88439 -16.80408 -16.35223 -16.34436 -15.94857 -15.87620 -15.37382 -15.07204 -14.90372 -14.51549 -14.40229 -13.85169 -13.56513 -13.38534 -12.96529 -12.91035 -12.67894 -12.53131 -12.41830 -12.26239 -12.02674 -11.85403 -11.72131 -11.26501 -11.00743 -10.92257 -10.78982 -10.56454 -10.25586 -9.95355 -8.99895 -7.87746 -5.15701 0.28866 1.50881 1.52198 1.57328 2.17118 2.23902 2.58558 2.92847 3.07321 3.48157 3.61911 3.70803 3.77504 3.87185 3.98487 4.15771 4.25412 4.30716 4.33245 4.38139 4.46433 4.52089 4.57502 4.64440 4.72761 4.80112 4.85010 4.89536 4.93627 5.13882 5.15297 5.24537 5.39549 5.42590 5.47036 5.53332 5.61989 6.09147 6.31296 6.54797 7.16443 7.39882 8.09627 8.36117 9.34689 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.005284 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.448615 B = 5297.267792 C = 6905.304193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.278 1.278 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.722 5.722 10 C 0.197 3.803 11 H 0.058 0.942 12 C 0.126 3.874 13 N -0.705 5.705 14 C 0.543 3.457 15 O -0.591 6.591 16 C -0.182 4.182 17 C -0.106 4.106 18 C 0.085 3.915 19 O -0.391 6.391 20 C 0.062 3.938 21 C -0.118 4.118 22 C -0.174 4.174 23 C -0.162 4.162 24 C -0.173 4.173 25 H 0.248 0.752 26 H 0.372 0.628 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.411 0.589 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -9.169 9.149 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.204 1.204 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.362 5.362 10 C 0.088 3.912 11 H 0.076 0.924 12 C 0.001 3.999 13 N -0.355 5.355 14 C 0.332 3.668 15 O -0.474 6.474 16 C -0.185 4.185 17 C -0.126 4.126 18 C 0.009 3.991 19 O -0.309 6.309 20 C -0.014 4.014 21 C -0.155 4.155 22 C -0.195 4.195 23 C -0.199 4.199 24 C -0.210 4.210 25 H 0.057 0.943 26 H 0.204 0.796 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.249 0.751 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.951 -9.760 9.011 13.318 hybrid contribution -0.092 1.487 -0.823 1.702 sum 0.859 -8.273 8.188 11.671 Atomic orbital electron populations 1.69796 1.06354 1.25690 1.59807 1.25336 0.96036 1.00297 1.04279 0.85431 0.77253 0.80360 0.78001 1.21118 1.22924 1.20374 1.19400 0.91098 0.84554 1.40132 0.90582 1.42534 1.05243 1.00313 1.88096 1.20143 0.94018 0.84729 0.92287 0.92431 1.21510 0.97992 0.97587 0.82761 1.45919 1.50147 1.21746 1.17665 1.18874 0.78006 0.83710 0.86195 1.90708 1.59047 1.24057 1.73598 1.20921 1.04102 0.99375 0.94102 1.23924 0.93020 0.98772 0.96887 1.21829 0.95782 0.90952 0.90541 1.88103 1.75437 1.25969 1.41422 1.22724 0.99332 0.89358 0.90006 1.21065 1.01802 0.93270 0.99409 1.22916 0.94009 1.03993 0.98626 1.23036 0.95090 0.98334 1.03490 1.22730 1.04696 0.94284 0.99275 0.94345 0.79562 0.93057 0.90280 0.75140 0.85203 0.84557 0.88999 0.86392 0.91898 0.89175 0.90049 0.88879 0.88573 0.87522 0.89599 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.60 13.06 21.65 0.28 -55.32 16 2 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.96 43.71 29.55 68.60 2.03 45.73 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.22 -10.95 8.63 84.03 0.73 -10.22 16 8 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 9 N -0.72 -32.58 4.54 -322.94 -1.47 -34.04 16 10 C 0.20 7.13 2.70 44.99 0.12 7.25 16 11 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 12 C 0.13 4.31 5.22 86.38 0.45 4.76 16 13 N -0.70 -24.02 5.33 -466.71 -2.49 -26.51 16 14 C 0.54 18.87 7.73 86.57 0.67 19.54 16 15 O -0.59 -23.73 16.06 -4.07 -0.07 -23.80 16 16 C -0.18 -5.18 5.86 -18.58 -0.11 -5.29 16 17 C -0.11 -2.55 9.58 24.59 0.24 -2.31 16 18 C 0.08 1.50 7.04 71.10 0.50 2.00 16 19 O -0.39 -8.57 10.83 -148.98 -1.61 -10.18 16 20 C 0.06 1.31 6.88 72.02 0.50 1.81 16 21 C -0.12 -2.97 5.29 29.79 0.16 -2.81 16 22 C -0.17 -5.79 5.36 -10.79 -0.06 -5.85 16 23 C -0.16 -4.41 10.18 30.61 0.31 -4.10 16 24 C -0.17 -5.83 9.78 30.61 0.30 -5.53 16 25 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.37 18.75 7.80 -92.71 -0.72 18.03 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.41 14.06 6.44 -92.71 -0.60 13.46 16 30 H 0.13 3.22 7.29 -2.91 -0.02 3.20 16 31 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.08 2.28 7.31 -2.38 -0.02 2.26 16 37 H 0.09 3.06 8.11 -2.39 -0.02 3.04 16 38 H 0.10 2.47 8.05 -2.39 -0.02 2.45 16 39 H 0.11 2.42 8.14 -2.38 -0.02 2.41 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.08 3.14 6.23 -2.39 -0.01 3.13 16 Total: -1.00 -63.06 337.95 0.67 -62.40 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -0.28 Total: 45.59 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.27 Total: -3.87 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.67 Total: -115.87 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.68 Total: -33.98 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.06 0.67 -62.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480014377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds