Wall clock time and date at job start Tue Mar 31 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48494 * 109.47224 * 239.99944 * 3 2 1 5 5 H 1.48499 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47077 * 120.00076 * 3 2 1 7 7 C 1.38806 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00118 * 159.81034 * 7 2 1 9 9 N 1.36935 * 120.00089 * 339.80155 * 7 2 1 10 10 C 1.46499 * 120.00176 * 321.11159 * 9 7 2 11 11 C 1.53001 * 109.46965 * 269.99958 * 10 9 7 12 12 N 1.46502 * 109.47286 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00182 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99982 * 179.97438 * 13 12 11 16 16 H 1.09006 * 115.50765 * 34.41413 * 15 13 12 17 17 C 1.52995 * 117.43426 * 179.78355 * 15 13 12 18 18 H 1.09010 * 119.80595 * 354.35192 * 17 15 13 19 19 C 1.54477 * 118.06912 * 198.08534 * 17 15 13 20 20 O 1.44421 * 104.80148 * 321.13164 * 19 17 15 21 21 C 1.44419 * 105.27603 * 319.48447 * 20 19 17 22 22 C 1.52999 * 117.43506 * 249.04122 * 15 13 12 23 23 H 1.09004 * 119.80217 * 4.63431 * 22 15 13 24 24 C 1.46504 * 119.99920 * 141.10849 * 9 7 2 25 25 C 1.52998 * 117.49877 * 54.48943 * 24 9 7 26 26 C 1.52998 * 117.49900 * 345.86165 * 24 9 7 27 27 H 0.97004 * 120.00513 * 355.03159 * 1 2 3 28 28 H 1.09004 * 109.47016 * 29.99361 * 10 9 7 29 29 H 1.08998 * 109.47187 * 149.99893 * 10 9 7 30 30 H 1.09004 * 109.46766 * 299.99556 * 11 10 9 31 31 H 1.08997 * 109.47727 * 59.99821 * 11 10 9 32 32 H 0.97008 * 119.99552 * 359.97438 * 12 11 10 33 33 H 1.08997 * 110.37025 * 79.96379 * 19 17 15 34 34 H 1.08999 * 110.37482 * 202.29810 * 19 17 15 35 35 H 1.08997 * 110.37645 * 159.34236 * 21 20 19 36 36 H 1.08999 * 110.37899 * 281.57228 * 21 20 19 37 37 H 1.09003 * 115.56072 * 200.17614 * 24 9 7 38 38 H 1.09003 * 117.49579 * 145.02452 * 25 24 9 39 39 H 1.08991 * 117.49819 * 359.97438 * 25 24 9 40 40 H 1.09004 * 117.49595 * 0.02562 * 26 24 9 41 41 H 1.08995 * 117.52027 * 214.96688 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0405 -1.2307 -0.3234 9 7 1.3887 -2.3517 0.4084 10 6 0.4655 -2.3207 1.5455 11 6 1.2401 -2.5832 2.8386 12 7 0.3168 -2.5528 3.9756 13 6 0.7790 -2.7592 5.2247 14 8 1.9591 -2.9706 5.4074 15 6 -0.1707 -2.7274 6.3944 16 1 -1.1721 -3.1099 6.1965 17 6 0.4160 -2.9743 7.7856 18 1 1.4643 -3.2543 7.8897 19 6 -0.5521 -3.3673 8.9235 20 8 -1.7308 -2.5635 8.6992 21 6 -1.2365 -1.2634 8.3106 22 6 -0.0432 -1.5594 7.3744 23 1 0.6624 -0.7544 7.1689 24 6 1.6471 -3.6127 -0.2912 25 6 3.1043 -4.0576 -0.4306 26 6 2.3434 -3.5362 -1.6514 27 1 -0.4851 0.8369 0.0728 28 1 -0.0112 -1.3419 1.5998 29 1 -0.2964 -3.0893 1.4159 30 1 1.7168 -3.5620 2.7842 31 1 2.0020 -1.8146 2.9682 32 1 -0.6271 -2.3833 3.8295 33 1 -0.7985 -4.4273 8.8628 34 1 -0.1126 -3.1340 9.8932 35 1 -2.0085 -0.7071 7.7791 36 1 -0.9037 -0.7065 9.1866 37 1 0.8947 -4.3894 -0.1540 38 1 3.3105 -5.1270 -0.3852 39 1 3.8708 -3.4119 -0.0022 40 1 2.6097 -2.5476 -2.0255 41 1 2.0496 -4.2624 -2.4092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481182111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:23 Heat of formation + Delta-G solvation = -1.011487 kcal Electronic energy + Delta-G solvation = -21795.973901 eV Core-core repulsion = 18485.574308 eV Total energy + Delta-G solvation = -3310.399592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82312 -38.82466 -37.14720 -34.89121 -34.35552 -33.22842 -30.87362 -28.95523 -28.12316 -26.25228 -24.43749 -22.39550 -21.37985 -21.17627 -20.85660 -19.98977 -19.63789 -17.74481 -16.35772 -16.14878 -15.72630 -15.52777 -15.40167 -15.25322 -14.73070 -14.42295 -13.95965 -13.73436 -13.20761 -12.82858 -12.69262 -12.60035 -11.98427 -11.92568 -11.78398 -11.47512 -11.11457 -10.84154 -10.61086 -10.60019 -10.43946 -10.40761 -10.22197 -10.04121 -9.93523 -9.66463 -9.60131 -9.29419 -8.59430 -8.47655 -6.64329 -5.87602 -3.54753 2.57373 3.20657 3.31883 3.37028 3.40652 3.55091 3.79987 4.37082 4.46454 4.49343 4.63667 4.66670 4.92448 5.10339 5.14911 5.19819 5.26008 5.30091 5.37610 5.44077 5.50261 5.72543 5.87365 5.88252 5.98688 6.07015 6.16199 6.29430 6.45767 6.47422 6.48248 6.58555 6.81289 6.90876 7.01231 7.16200 7.43466 7.71501 7.87525 8.38941 8.52588 9.04928 9.65821 10.22824 11.07125 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.004017 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.356825 B = 6968.262569 C = 7858.889059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.018 3.982 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.545 5.545 10 C 0.141 3.859 11 C 0.099 3.901 12 N -0.713 5.713 13 C 0.538 3.462 14 O -0.547 6.547 15 C -0.142 4.142 16 H 0.125 0.875 17 C -0.169 4.169 18 H 0.136 0.864 19 C 0.071 3.929 20 O -0.375 6.375 21 C 0.073 3.927 22 C -0.175 4.175 23 H 0.129 0.871 24 C 0.125 3.875 25 C -0.227 4.227 26 C -0.194 4.194 27 H 0.256 0.744 28 H 0.099 0.901 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -4.669 13.532 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.183 4.183 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.261 5.261 10 C 0.014 3.986 11 C -0.026 4.026 12 N -0.363 5.363 13 C 0.323 3.677 14 O -0.425 6.425 15 C -0.163 4.163 16 H 0.143 0.857 17 C -0.188 4.188 18 H 0.153 0.847 19 C -0.005 4.005 20 O -0.293 6.293 21 C -0.004 4.004 22 C -0.193 4.193 23 H 0.147 0.853 24 C 0.016 3.984 25 C -0.267 4.267 26 C -0.233 4.233 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.233 0.767 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.140 -4.703 13.578 14.708 hybrid contribution 0.391 1.017 -0.202 1.108 sum -2.749 -3.686 13.376 14.144 Atomic orbital electron populations 1.70045 1.05529 1.26455 1.50396 1.25194 0.95021 0.98831 0.99277 0.86470 0.79312 0.83146 0.78517 1.20465 1.21458 1.20738 1.18933 0.93692 0.85136 1.41439 0.91913 1.43177 1.50979 1.03013 1.28949 1.21034 0.91020 1.03008 0.83584 1.22372 0.93404 1.01170 0.85657 1.46016 1.12677 1.71201 1.06392 1.19410 0.87933 0.76872 0.83475 1.90683 1.17090 1.49452 1.85263 1.22125 1.00953 1.03345 0.89895 0.85742 1.23972 1.01722 0.99756 0.93337 0.84654 1.22988 0.84853 0.96696 0.95981 1.89161 1.28286 1.22826 1.89068 1.22979 0.95157 0.86155 0.96102 1.23996 1.01673 0.92850 1.00825 0.85300 1.21161 0.91668 0.90607 0.94975 1.23371 0.99676 0.99017 1.04681 1.23066 1.06621 1.02079 0.91550 0.93387 0.88294 0.94924 0.92867 0.91640 0.76706 0.88478 0.90903 0.88299 0.90881 0.89380 0.90870 0.89646 0.88293 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.04 11.48 55.49 0.64 -23.41 16 2 C 0.02 0.47 4.97 -17.43 -0.09 0.38 16 3 Si 0.90 21.01 29.60 -169.99 -5.03 15.97 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.26 -6.88 8.00 -15.06 -0.12 -7.00 16 8 H 0.06 1.67 7.26 -52.49 -0.38 1.29 16 9 N -0.55 -13.02 2.78 -165.66 -0.46 -13.48 16 10 C 0.14 3.04 5.45 -4.04 -0.02 3.02 16 11 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 12 N -0.71 -11.71 5.56 -60.29 -0.33 -12.05 16 13 C 0.54 8.90 7.61 -10.99 -0.08 8.82 16 14 O -0.55 -11.12 16.34 5.56 0.09 -11.03 16 15 C -0.14 -1.78 5.56 -91.77 -0.51 -2.29 16 16 H 0.12 1.40 8.06 -51.93 -0.42 0.99 16 17 C -0.17 -1.89 6.68 -89.15 -0.60 -2.49 16 18 H 0.14 1.63 7.82 -51.92 -0.41 1.22 16 19 C 0.07 0.65 7.53 37.93 0.29 0.94 16 20 O -0.37 -4.06 11.31 -35.23 -0.40 -4.46 16 21 C 0.07 0.67 7.54 37.96 0.29 0.95 16 22 C -0.17 -1.92 6.94 -89.12 -0.62 -2.54 16 23 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 24 C 0.13 2.64 6.61 -67.93 -0.45 2.19 16 25 C -0.23 -4.37 10.09 -26.73 -0.27 -4.64 16 26 C -0.19 -3.87 9.82 -26.73 -0.26 -4.13 16 27 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 28 H 0.10 2.39 5.57 -51.93 -0.29 2.10 16 29 H 0.03 0.65 8.04 -51.93 -0.42 0.24 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.40 5.53 8.47 -40.82 -0.35 5.19 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.77 7.99 -51.93 -0.41 1.36 16 40 H 0.10 2.18 6.98 -51.93 -0.36 1.82 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -30.25 341.07 -9.22 -39.48 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.40 Total: 8.68 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.47 Total: -4.85 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.16 Total: -48.93 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.31 Total: -15.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.25 -9.22 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481182111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.464 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds