Wall clock time and date at job start Tue Mar 31 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99695 * 2 1 4 4 H 1.48494 * 109.47224 * 239.99944 * 3 2 1 5 5 H 1.48499 * 109.47354 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47077 * 120.00076 * 3 2 1 7 7 C 1.38806 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00118 * 159.81034 * 7 2 1 9 9 N 1.36935 * 120.00089 * 339.80155 * 7 2 1 10 10 C 1.46499 * 120.00176 * 321.11159 * 9 7 2 11 11 C 1.53001 * 109.46965 * 269.99958 * 10 9 7 12 12 N 1.46502 * 109.47286 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00182 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99982 * 179.97438 * 13 12 11 16 16 H 1.09006 * 115.50765 * 34.41413 * 15 13 12 17 17 C 1.52995 * 117.43426 * 179.78355 * 15 13 12 18 18 H 1.09010 * 119.80595 * 354.35192 * 17 15 13 19 19 C 1.54477 * 118.06912 * 198.08534 * 17 15 13 20 20 O 1.44421 * 104.80148 * 321.13164 * 19 17 15 21 21 C 1.44419 * 105.27603 * 319.48447 * 20 19 17 22 22 C 1.52999 * 117.43506 * 249.04122 * 15 13 12 23 23 H 1.09004 * 119.80217 * 4.63431 * 22 15 13 24 24 C 1.46504 * 119.99920 * 141.10849 * 9 7 2 25 25 C 1.52998 * 117.49877 * 54.48943 * 24 9 7 26 26 C 1.52998 * 117.49900 * 345.86165 * 24 9 7 27 27 H 0.97004 * 120.00513 * 355.03159 * 1 2 3 28 28 H 1.09004 * 109.47016 * 29.99361 * 10 9 7 29 29 H 1.08998 * 109.47187 * 149.99893 * 10 9 7 30 30 H 1.09004 * 109.46766 * 299.99556 * 11 10 9 31 31 H 1.08997 * 109.47727 * 59.99821 * 11 10 9 32 32 H 0.97008 * 119.99552 * 359.97438 * 12 11 10 33 33 H 1.08997 * 110.37025 * 79.96379 * 19 17 15 34 34 H 1.08999 * 110.37482 * 202.29810 * 19 17 15 35 35 H 1.08997 * 110.37645 * 159.34236 * 21 20 19 36 36 H 1.08999 * 110.37899 * 281.57228 * 21 20 19 37 37 H 1.09003 * 115.56072 * 200.17614 * 24 9 7 38 38 H 1.09003 * 117.49579 * 145.02452 * 25 24 9 39 39 H 1.08991 * 117.49819 * 359.97438 * 25 24 9 40 40 H 1.09004 * 117.49595 * 0.02562 * 26 24 9 41 41 H 1.08995 * 117.52027 * 214.96688 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0405 -1.2307 -0.3234 9 7 1.3887 -2.3517 0.4084 10 6 0.4655 -2.3207 1.5455 11 6 1.2401 -2.5832 2.8386 12 7 0.3168 -2.5528 3.9756 13 6 0.7790 -2.7592 5.2247 14 8 1.9591 -2.9706 5.4074 15 6 -0.1707 -2.7274 6.3944 16 1 -1.1721 -3.1099 6.1965 17 6 0.4160 -2.9743 7.7856 18 1 1.4643 -3.2543 7.8897 19 6 -0.5521 -3.3673 8.9235 20 8 -1.7308 -2.5635 8.6992 21 6 -1.2365 -1.2634 8.3106 22 6 -0.0432 -1.5594 7.3744 23 1 0.6624 -0.7544 7.1689 24 6 1.6471 -3.6127 -0.2912 25 6 3.1043 -4.0576 -0.4306 26 6 2.3434 -3.5362 -1.6514 27 1 -0.4851 0.8369 0.0728 28 1 -0.0112 -1.3419 1.5998 29 1 -0.2964 -3.0893 1.4159 30 1 1.7168 -3.5620 2.7842 31 1 2.0020 -1.8146 2.9682 32 1 -0.6271 -2.3833 3.8295 33 1 -0.7985 -4.4273 8.8628 34 1 -0.1126 -3.1340 9.8932 35 1 -2.0085 -0.7071 7.7791 36 1 -0.9037 -0.7065 9.1866 37 1 0.8947 -4.3894 -0.1540 38 1 3.3105 -5.1270 -0.3852 39 1 3.8708 -3.4119 -0.0022 40 1 2.6097 -2.5476 -2.0255 41 1 2.0496 -4.2624 -2.4092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481182111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:23 Heat of formation + Delta-G solvation = -20.349043 kcal Electronic energy + Delta-G solvation = -21796.812440 eV Core-core repulsion = 18485.574308 eV Total energy + Delta-G solvation = -3311.238132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78610 -40.09284 -38.84814 -36.37985 -35.35209 -35.00393 -32.71427 -29.76152 -29.65409 -27.43312 -26.18538 -23.74167 -22.96577 -22.58347 -21.73098 -21.68599 -20.90558 -18.93801 -18.09316 -17.36232 -17.07617 -16.93472 -16.49767 -16.35017 -16.17407 -15.97775 -15.63396 -14.98759 -14.56895 -14.31378 -14.14091 -13.74547 -13.51725 -13.21787 -13.00231 -12.79641 -12.71474 -12.58300 -12.42331 -12.18986 -12.08150 -11.82729 -11.42804 -11.39943 -11.27444 -11.05172 -10.92553 -10.60470 -10.45574 -10.09302 -8.56428 -7.84175 -5.56302 1.35024 1.42243 1.45181 1.51255 2.00191 2.45796 2.54550 2.94499 3.12187 3.42408 3.47506 3.57339 3.63564 3.72133 3.84033 4.09600 4.27535 4.28725 4.32994 4.38027 4.49340 4.50922 4.61664 4.69797 4.76347 4.77889 4.83400 4.86503 4.93908 4.97992 5.01765 5.17458 5.31406 5.39762 5.53897 5.61576 5.67784 5.73478 6.40195 6.54618 7.09333 7.19871 7.76446 8.27882 9.04955 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.004017 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.356825 B = 6968.262569 C = 7858.889059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.022 4.022 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.268 4.268 8 H 0.050 0.950 9 N -0.564 5.564 10 C 0.148 3.852 11 C 0.122 3.878 12 N -0.706 5.706 13 C 0.537 3.463 14 O -0.589 6.589 15 C -0.150 4.150 16 H 0.142 0.858 17 C -0.168 4.168 18 H 0.124 0.876 19 C 0.076 3.924 20 O -0.390 6.390 21 C 0.077 3.923 22 C -0.170 4.170 23 H 0.122 0.878 24 C 0.101 3.899 25 C -0.209 4.209 26 C -0.191 4.191 27 H 0.255 0.745 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.414 0.586 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 -5.382 14.648 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.221 4.221 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.398 4.398 8 H 0.067 0.933 9 N -0.281 5.281 10 C 0.021 3.979 11 C -0.004 4.004 12 N -0.357 5.357 13 C 0.324 3.676 14 O -0.470 6.470 15 C -0.171 4.171 16 H 0.159 0.841 17 C -0.187 4.187 18 H 0.142 0.858 19 C 0.000 4.000 20 O -0.309 6.309 21 C 0.000 4.000 22 C -0.189 4.189 23 H 0.140 0.860 24 C -0.007 4.007 25 C -0.250 4.250 26 C -0.229 4.229 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.250 0.750 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.018 -5.427 14.693 16.170 hybrid contribution 0.703 1.183 -0.552 1.482 sum -3.314 -4.244 14.142 15.132 Atomic orbital electron populations 1.70123 1.06306 1.26785 1.51582 1.25730 0.95687 1.01013 0.99664 0.85665 0.78233 0.80350 0.78150 1.20164 1.21144 1.21205 1.18987 0.93339 0.86485 1.40979 0.93253 1.43366 1.51244 1.03416 1.30037 1.20911 0.91061 1.02226 0.83668 1.21841 0.92883 0.99366 0.86354 1.45868 1.12924 1.71097 1.05785 1.20079 0.87990 0.75360 0.84146 1.90658 1.19212 1.51288 1.85880 1.22001 1.00594 1.05616 0.88886 0.84052 1.24050 1.01683 1.00000 0.92921 0.85845 1.23109 0.83909 0.97230 0.95754 1.89152 1.29040 1.23533 1.89150 1.23107 0.94531 0.85933 0.96386 1.24101 1.02504 0.92430 0.99829 0.85997 1.21470 0.93289 0.90136 0.95811 1.23315 0.97790 1.00386 1.03477 1.23053 1.06331 1.01567 0.91977 0.93577 0.90591 0.93173 0.93535 0.95163 0.75015 0.87318 0.88768 0.87216 0.88771 0.87221 0.87657 0.91732 0.91073 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.88 11.48 21.65 0.25 -49.63 16 2 C -0.02 -1.19 4.97 84.86 0.42 -0.77 16 3 Si 0.95 43.83 29.60 68.60 2.03 45.86 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 7 C -0.27 -14.32 8.00 84.03 0.67 -13.65 16 8 H 0.05 2.72 7.26 -2.91 -0.02 2.70 16 9 N -0.56 -27.14 2.78 -678.03 -1.88 -29.03 16 10 C 0.15 6.45 5.45 86.38 0.47 6.93 16 11 C 0.12 4.96 6.00 86.38 0.52 5.48 16 12 N -0.71 -23.21 5.56 -463.05 -2.57 -25.79 16 13 C 0.54 17.78 7.61 87.66 0.67 18.45 16 14 O -0.59 -24.48 16.34 -3.03 -0.05 -24.53 16 15 C -0.15 -3.60 5.56 -11.54 -0.06 -3.67 16 16 H 0.14 2.91 8.06 -2.38 -0.02 2.89 16 17 C -0.17 -3.52 6.68 -9.84 -0.07 -3.59 16 18 H 0.12 2.92 7.82 -2.38 -0.02 2.90 16 19 C 0.08 1.19 7.53 72.48 0.55 1.74 16 20 O -0.39 -7.33 11.31 -148.98 -1.69 -9.01 16 21 C 0.08 1.20 7.54 72.50 0.55 1.75 16 22 C -0.17 -3.48 6.94 -9.82 -0.07 -3.55 16 23 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 24 C 0.10 4.17 6.61 44.99 0.30 4.46 16 25 C -0.21 -7.80 10.09 30.60 0.31 -7.49 16 26 C -0.19 -7.38 9.82 30.60 0.30 -7.08 16 27 H 0.25 13.57 8.32 -92.71 -0.77 12.80 16 28 H 0.08 3.73 5.57 -2.38 -0.01 3.71 16 29 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.41 11.21 8.47 -92.70 -0.79 10.43 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 4.01 8.10 -2.39 -0.02 3.99 16 38 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.06 2.68 7.99 -2.39 -0.02 2.66 16 40 H 0.07 3.16 6.98 -2.38 -0.02 3.15 16 41 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -65.81 341.07 0.88 -64.92 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.24 Total: 28.19 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.55 Total: -0.98 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.21 Total: -104.44 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.73 Total: -33.54 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.81 0.88 -64.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481182111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.573 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds