Wall clock time and date at job start Tue Mar 31 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99493 * 2 1 4 4 H 1.48502 * 109.47148 * 275.34802 * 3 2 1 5 5 H 1.48501 * 109.47332 * 35.35261 * 3 2 1 6 6 H 1.48504 * 109.46849 * 155.35231 * 3 2 1 7 7 C 1.38807 * 120.00527 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99873 * 27.59947 * 7 2 1 9 9 N 1.36940 * 120.00005 * 207.60011 * 7 2 1 10 10 C 1.47149 * 120.98160 * 44.76795 * 9 7 2 11 11 C 1.53295 * 108.38713 * 129.48481 * 10 9 7 12 12 O 1.42972 * 109.22191 * 52.30070 * 11 10 9 13 13 C 1.42958 * 114.16234 * 297.41702 * 12 11 10 14 14 C 1.47150 * 120.98166 * 224.78582 * 9 7 2 15 15 H 1.09001 * 109.68205 * 110.79266 * 14 9 7 16 16 C 1.53006 * 109.68297 * 350.27456 * 14 9 7 17 17 N 1.46498 * 109.46810 * 59.94162 * 16 14 9 18 18 C 1.34776 * 120.00115 * 179.97438 * 17 16 14 19 19 O 1.21620 * 119.99510 * 0.02562 * 18 17 16 20 20 C 1.47102 * 120.00374 * 179.97438 * 18 17 16 21 21 C 1.32991 * 119.99961 * 180.02562 * 20 18 17 22 22 C 1.51411 * 136.31759 * 359.63035 * 21 20 18 23 23 C 1.53385 * 87.51568 * 206.05909 * 22 21 20 24 24 C 1.51412 * 136.31536 * 180.02562 * 21 20 18 25 25 H 0.96998 * 120.00792 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.67974 * 249.20301 * 10 9 7 27 27 H 1.08995 * 109.68551 * 9.72467 * 10 9 7 28 28 H 1.09001 * 109.51473 * 172.21974 * 11 10 9 29 29 H 1.09004 * 109.51157 * 292.32948 * 11 10 9 30 30 H 1.08993 * 109.51892 * 302.65736 * 13 12 11 31 31 H 1.09004 * 109.51245 * 182.50508 * 13 12 11 32 32 H 1.08995 * 109.47004 * 179.97438 * 16 14 9 33 33 H 1.09001 * 109.47092 * 299.94271 * 16 14 9 34 34 H 0.97001 * 120.00267 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.99625 * 0.02562 * 20 18 17 36 36 H 1.08995 * 113.56182 * 320.63782 * 22 21 20 37 37 H 1.08998 * 113.55595 * 91.37801 * 22 21 20 38 38 H 1.09003 * 113.96208 * 220.29106 * 23 22 21 39 39 H 1.08998 * 113.70880 * 88.81103 * 23 22 21 40 40 H 1.08994 * 113.55862 * 268.62685 * 24 21 20 41 41 H 1.09003 * 113.56074 * 39.28342 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.3845 2.1118 -1.3940 5 1 1.5086 2.6175 0.8101 6 1 3.5996 1.4103 0.5839 7 6 2.0103 -1.2020 0.0005 8 1 1.5625 -2.0843 -0.4324 9 7 3.2628 -1.2692 0.5500 10 6 3.5550 -0.6415 1.8485 11 6 4.2468 -1.6776 2.7416 12 8 5.3615 -2.2343 2.0404 13 6 5.0092 -2.9422 0.8494 14 6 4.3564 -1.9707 -0.1408 15 1 5.0952 -1.2480 -0.4872 16 6 3.7973 -2.7483 -1.3340 17 7 3.1516 -1.8182 -2.2636 18 6 2.5845 -2.2813 -3.3951 19 8 2.6084 -3.4715 -3.6442 20 6 1.9356 -1.3475 -4.3283 21 6 1.3756 -1.8046 -5.4446 22 6 1.1988 -3.1543 -6.1077 23 6 1.1181 -2.4111 -7.4470 24 6 0.6365 -1.2068 -6.6231 25 1 -0.4851 0.8400 0.0004 26 1 4.2132 0.2151 1.7023 27 1 2.6260 -0.3151 2.3158 28 1 4.5953 -1.1961 3.6553 29 1 3.5418 -2.4699 2.9936 30 1 4.3072 -3.7394 1.0937 31 1 5.9060 -3.3704 0.4016 32 1 4.6100 -3.2661 -1.8433 33 1 3.0666 -3.4768 -0.9828 34 1 3.1328 -0.8689 -2.0651 35 1 1.9140 -0.2906 -4.1069 36 1 2.0727 -3.7999 -6.0215 37 1 0.2718 -3.6571 -5.8318 38 1 0.3656 -2.8076 -8.1287 39 1 2.0868 -2.2596 -7.9232 40 1 -0.4446 -1.1752 -6.4887 41 1 1.0487 -0.2552 -6.9586 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484594153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:36 Heat of formation + Delta-G solvation = -28.325112 kcal Electronic energy + Delta-G solvation = -22755.442556 eV Core-core repulsion = 19443.858556 eV Total energy + Delta-G solvation = -3311.584000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92507 -40.12049 -39.11153 -36.93798 -35.18303 -33.67256 -32.69888 -31.53955 -29.21477 -27.09422 -26.64900 -25.10217 -24.28518 -23.32526 -21.66069 -21.39682 -19.35691 -18.55252 -17.83795 -17.55237 -17.20698 -16.68749 -16.57050 -16.32592 -15.98288 -15.58645 -15.50918 -15.28113 -15.03863 -14.56548 -14.49326 -13.87445 -13.46022 -13.33727 -13.06703 -12.89050 -12.71939 -12.60806 -12.56494 -12.25755 -12.08264 -11.88880 -11.57066 -11.47862 -11.27398 -10.94151 -10.60949 -10.44236 -10.23145 -9.73582 -8.57719 -8.21153 -5.63220 0.43786 1.35481 1.45635 1.54344 2.28032 2.45239 2.52478 2.90236 3.03661 3.26160 3.47856 3.61105 3.83405 3.98643 4.14266 4.22608 4.27491 4.30749 4.39071 4.46210 4.57603 4.62486 4.63995 4.72130 4.74357 4.81566 4.84869 4.95317 4.97255 5.04714 5.05661 5.24923 5.28547 5.36892 5.63996 5.70804 5.92057 6.23598 6.28532 6.75424 6.92780 7.39282 7.56518 8.08560 8.97242 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.005675 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.279524 B = 4932.689596 C = 5987.659781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.304 1.304 6 H -0.235 1.235 7 C -0.246 4.246 8 H 0.037 0.963 9 N -0.613 5.613 10 C 0.102 3.898 11 C 0.051 3.949 12 O -0.391 6.391 13 C 0.059 3.941 14 C 0.121 3.879 15 H 0.054 0.946 16 C 0.145 3.855 17 N -0.690 5.690 18 C 0.540 3.460 19 O -0.595 6.595 20 C -0.214 4.214 21 C -0.079 4.079 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.100 4.100 25 H 0.263 0.737 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -1.004 -7.788 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.726 3.274 4 H -0.210 1.210 5 H -0.231 1.231 6 H -0.158 1.158 7 C -0.375 4.375 8 H 0.054 0.946 9 N -0.340 5.340 10 C -0.023 4.023 11 C -0.027 4.027 12 O -0.310 6.310 13 C -0.019 4.019 14 C 0.016 3.984 15 H 0.071 0.929 16 C 0.020 3.980 17 N -0.338 5.338 18 C 0.330 3.670 19 O -0.480 6.480 20 C -0.234 4.234 21 C -0.081 4.081 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.243 0.757 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.944 -1.725 -7.859 10.628 hybrid contribution -0.581 1.408 0.420 1.580 sum 6.363 -0.317 -7.439 9.794 Atomic orbital electron populations 1.70070 1.07956 1.27482 1.51790 1.26103 0.95121 1.00398 0.97647 0.86506 0.81433 0.81398 0.78064 1.21039 1.23134 1.15848 1.18256 0.90209 0.93192 1.35864 0.94577 1.44455 1.06855 1.64624 1.18068 1.22114 0.98685 0.95138 0.86364 1.23088 0.88600 0.96047 0.94991 1.87830 1.32604 1.72299 1.38240 1.22953 1.00770 0.92839 0.85343 1.21720 0.90482 0.94371 0.91857 0.92880 1.21059 0.96076 0.91719 0.89119 1.45826 1.56155 1.11961 1.19901 1.18756 0.78249 0.88048 0.81905 1.90655 1.62195 1.17793 1.77309 1.21642 1.07028 0.99824 0.94928 1.23936 0.91662 1.00521 0.91987 1.22288 1.02518 0.94566 0.95580 1.22683 1.02915 0.95334 0.95000 1.22417 1.00711 0.99629 0.90908 0.92818 0.94198 0.92308 0.86687 0.93766 0.93587 0.86069 0.90105 0.94160 0.75738 0.84876 0.91701 0.88627 0.88105 0.89112 0.87026 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.97 21.65 0.30 -54.21 16 2 C 0.01 0.35 5.05 84.86 0.43 0.77 16 3 Si 0.90 40.75 27.22 68.60 1.87 42.61 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.23 -9.86 4.91 99.48 0.49 -9.37 16 7 C -0.25 -12.62 6.64 84.03 0.56 -12.06 16 8 H 0.04 2.17 6.81 -2.91 -0.02 2.15 16 9 N -0.61 -26.41 2.44 -673.72 -1.64 -28.05 16 10 C 0.10 3.99 4.72 86.35 0.41 4.39 16 11 C 0.05 1.65 6.99 72.08 0.50 2.15 16 12 O -0.39 -12.92 10.74 -148.98 -1.60 -14.52 16 13 C 0.06 1.85 6.29 72.08 0.45 2.30 16 14 C 0.12 4.39 3.22 44.97 0.14 4.53 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.14 5.46 4.49 86.38 0.39 5.84 16 17 N -0.69 -28.02 3.99 -466.70 -1.86 -29.88 16 18 C 0.54 22.56 7.76 86.57 0.67 23.23 16 19 O -0.60 -27.27 15.15 -4.09 -0.06 -27.34 16 20 C -0.21 -7.72 10.03 23.43 0.23 -7.48 16 21 C -0.08 -2.42 6.93 -17.17 -0.12 -2.54 16 22 C -0.11 -3.10 6.99 30.06 0.21 -2.89 16 23 C -0.12 -2.30 8.17 30.94 0.25 -2.04 16 24 C -0.10 -2.11 7.95 30.16 0.24 -1.87 16 25 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.04 1.55 6.31 -2.38 -0.02 1.54 16 27 H 0.06 2.48 7.27 -2.39 -0.02 2.46 16 28 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.04 1.74 7.59 -2.39 -0.02 1.72 16 34 H 0.41 16.83 7.24 -92.71 -0.67 16.16 16 35 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.06 2.03 7.49 -2.39 -0.02 2.01 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.32 326.49 1.51 -64.81 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.14 Total: 32.22 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 4.37 Total: 14.35 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.20 Total: -112.14 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.66 Total: -41.86 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.87 Total: 42.61 kcal Total: -66.32 1.51 -64.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484594153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.486 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds