Wall clock time and date at job start Tue Mar 31 2020 02:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99966 * 2 1 4 4 H 1.48494 * 109.47137 * 268.95185 * 3 2 1 5 5 H 1.48498 * 109.47502 * 28.95688 * 3 2 1 6 6 H 1.48502 * 109.46872 * 148.95476 * 3 2 1 7 7 C 1.38813 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99977 * 343.19090 * 7 2 1 9 9 N 1.36935 * 120.00107 * 163.18981 * 7 2 1 10 10 C 1.47154 * 120.98073 * 329.50939 * 9 7 2 11 11 C 1.53293 * 108.38298 * 230.55552 * 10 9 7 12 12 O 1.42955 * 109.22458 * 307.69952 * 11 10 9 13 13 C 1.42966 * 114.16799 * 62.58092 * 12 11 10 14 14 C 1.47158 * 120.98238 * 149.53260 * 9 7 2 15 15 H 1.09003 * 109.67884 * 249.16819 * 14 9 7 16 16 C 1.52998 * 109.70930 * 9.70040 * 14 9 7 17 17 N 1.46494 * 109.47630 * 298.59200 * 16 14 9 18 18 C 1.34776 * 120.00266 * 180.02562 * 17 16 14 19 19 O 1.21606 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.47101 * 119.99866 * 180.02562 * 18 17 16 21 21 C 1.32997 * 120.00039 * 179.97438 * 20 18 17 22 22 C 1.51404 * 136.31370 * 359.63490 * 21 20 18 23 23 C 1.53374 * 87.51938 * 206.05095 * 22 21 20 24 24 C 1.51401 * 136.31958 * 179.97438 * 21 20 18 25 25 H 0.96999 * 119.99894 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.67557 * 110.83474 * 10 9 7 27 27 H 1.08999 * 109.71233 * 350.29820 * 10 9 7 28 28 H 1.09002 * 109.51211 * 187.77703 * 11 10 9 29 29 H 1.09002 * 109.51376 * 67.62365 * 11 10 9 30 30 H 1.08999 * 109.51118 * 177.49571 * 13 12 11 31 31 H 1.08993 * 109.55339 * 57.36919 * 13 12 11 32 32 H 1.08999 * 109.47409 * 58.60277 * 16 14 9 33 33 H 1.09005 * 109.47101 * 178.59406 * 16 14 9 34 34 H 0.96998 * 119.99567 * 0.02562 * 17 16 14 35 35 H 1.08003 * 120.00445 * 0.02562 * 20 18 17 36 36 H 1.09004 * 113.56328 * 320.63404 * 22 21 20 37 37 H 1.08999 * 113.56223 * 91.36607 * 22 21 20 38 38 H 1.09005 * 113.97131 * 220.29241 * 23 22 21 39 39 H 1.08996 * 113.71056 * 88.80318 * 23 22 21 40 40 H 1.08996 * 113.56742 * 268.63421 * 24 21 20 41 41 H 1.09000 * 113.55830 * 39.37298 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5199 2.0336 -1.3998 5 1 1.4368 2.6589 0.6778 6 1 3.5365 1.4466 0.7221 7 6 2.0103 -1.2022 0.0005 8 1 1.5048 -2.1174 0.2714 9 7 3.3357 -1.2277 -0.3424 10 6 3.8885 -0.2592 -1.3025 11 6 4.6732 -1.0306 -2.3698 12 8 5.6131 -1.8965 -1.7291 13 6 5.0163 -2.9004 -0.9045 14 6 4.2493 -2.2248 0.2379 15 1 4.9513 -1.7318 0.9105 16 6 3.4458 -3.2732 1.0100 17 7 2.7214 -2.6241 2.1054 18 6 1.9424 -3.3568 2.9257 19 8 1.8413 -4.5568 2.7568 20 6 1.2146 -2.7049 4.0253 21 6 0.4456 -3.4278 4.8345 22 6 0.0556 -4.8852 4.9613 23 6 -1.2348 -4.4118 5.6417 24 6 -0.4355 -3.1597 6.0362 25 1 -0.4850 0.8400 0.0004 26 1 4.5542 0.4315 -0.7850 27 1 3.0771 0.2960 -1.7731 28 1 5.2046 -0.3269 -3.0106 29 1 3.9839 -1.6230 -2.9714 30 1 5.7946 -3.5418 -0.4910 31 1 4.3284 -3.5002 -1.5001 32 1 2.7344 -3.7531 0.3379 33 1 4.1238 -4.0233 1.4170 34 1 2.8023 -1.6670 2.2403 35 1 1.3041 -1.6390 4.1751 36 1 -0.1138 -5.3759 4.0028 37 1 0.7110 -5.4560 5.6192 38 1 -1.5390 -5.0252 6.4899 39 1 -2.0498 -4.2129 4.9458 40 1 0.0851 -3.2574 6.9888 41 1 -1.0078 -2.2353 5.9592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484594154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:40 Heat of formation + Delta-G solvation = -5.628151 kcal Electronic energy + Delta-G solvation = -22705.312013 eV Core-core repulsion = 19394.712227 eV Total energy + Delta-G solvation = -3310.599786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.47545 -38.77724 -37.84962 -35.39491 -33.60300 -31.78932 -31.17264 -30.24734 -27.52909 -25.71410 -25.55645 -23.46767 -23.02304 -22.03419 -20.11259 -19.87872 -17.98601 -16.93005 -16.26151 -16.08470 -15.82636 -15.34081 -15.23530 -15.02064 -14.47976 -14.13439 -13.96954 -13.85386 -13.53090 -13.01692 -12.56461 -12.35128 -12.13770 -11.89936 -11.78925 -11.56692 -11.50440 -11.13017 -10.86395 -10.77752 -10.54975 -10.34796 -10.31304 -9.83258 -9.63607 -9.43020 -9.09378 -8.89105 -8.68532 -8.18405 -7.03087 -6.04430 -3.47925 1.77734 3.21300 3.38577 3.39926 3.76715 3.96467 4.28801 4.40774 4.61156 4.64786 4.73037 4.91347 5.20693 5.20966 5.43866 5.50918 5.57268 5.64561 5.68465 5.72792 5.78900 5.84260 5.89129 5.90667 5.93095 6.03726 6.12720 6.19368 6.23739 6.34359 6.34788 6.49586 6.55649 6.73385 6.92117 7.17234 7.59134 7.80502 8.23855 8.32040 8.78565 8.94802 9.57787 9.94546 11.09628 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.005549 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.447804 B = 5044.581915 C = 6160.618019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.098 0.902 9 N -0.606 5.606 10 C 0.091 3.909 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.046 0.954 16 C 0.138 3.862 17 N -0.691 5.691 18 C 0.548 3.452 19 O -0.565 6.565 20 C -0.176 4.176 21 C -0.080 4.080 22 C -0.102 4.102 23 C -0.143 4.143 24 C -0.107 4.107 25 H 0.263 0.737 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -4.320 6.947 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.171 4.171 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.115 0.885 9 N -0.333 5.333 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.064 0.936 16 C 0.013 3.987 17 N -0.341 5.341 18 C 0.337 3.663 19 O -0.447 6.447 20 C -0.197 4.197 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.180 4.180 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.257 -5.040 6.795 9.470 hybrid contribution 0.073 1.783 -0.105 1.788 sum 4.330 -3.257 6.690 8.609 Atomic orbital electron populations 1.69805 1.05629 1.26581 1.52331 1.25341 0.95163 0.97419 0.99133 0.87017 0.79635 0.84731 0.77437 1.21510 1.23148 1.19625 1.19029 0.82716 0.94840 1.42845 0.88494 1.44440 1.06424 1.35379 1.47064 1.22057 0.97302 0.92803 0.91310 1.23067 0.92123 0.93144 0.94883 1.87823 1.33453 1.45656 1.63753 1.22909 0.97204 0.89959 0.92389 1.21455 0.92076 0.90835 0.93519 0.93645 1.21103 0.94844 0.94155 0.88566 1.45801 1.46634 1.12309 1.29380 1.18282 0.79337 0.86518 0.82182 1.90692 1.65047 1.14904 1.74047 1.21677 1.00420 1.00020 0.97589 1.23253 0.92247 0.97686 0.95007 1.22130 0.95635 0.94157 1.01912 1.22718 0.97096 0.97429 1.00744 1.22297 0.96583 0.99268 0.96290 0.92649 0.94838 0.90032 0.89766 0.93007 0.89379 0.92916 0.91203 0.92167 0.75169 0.85215 0.89660 0.89036 0.90870 0.89762 0.88673 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.97 55.49 0.78 -25.33 16 2 C 0.03 0.79 5.28 -17.43 -0.09 0.70 16 3 Si 0.88 20.98 24.28 -169.99 -4.13 16.85 16 4 H -0.29 -6.69 6.54 56.52 0.37 -6.32 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.32 6.65 56.52 0.38 -5.95 16 7 C -0.27 -6.75 7.59 -15.06 -0.11 -6.86 16 8 H 0.10 2.70 5.99 -52.48 -0.31 2.39 16 9 N -0.61 -13.31 2.78 -164.30 -0.46 -13.76 16 10 C 0.09 1.88 4.38 -3.53 -0.02 1.86 16 11 C 0.05 0.81 6.98 37.31 0.26 1.07 16 12 O -0.39 -6.96 10.74 -35.23 -0.38 -7.34 16 13 C 0.05 0.90 6.29 37.31 0.23 1.13 16 14 C 0.13 2.37 3.20 -67.42 -0.22 2.15 16 15 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 16 C 0.14 2.54 4.44 -4.05 -0.02 2.52 16 17 N -0.69 -13.32 3.80 -61.50 -0.23 -13.56 16 18 C 0.55 10.82 7.76 -12.67 -0.10 10.73 16 19 O -0.57 -12.36 15.15 5.27 0.08 -12.28 16 20 C -0.18 -3.02 10.03 -37.81 -0.38 -3.40 16 21 C -0.08 -1.22 6.93 -100.48 -0.70 -1.91 16 22 C -0.10 -1.42 6.99 -27.56 -0.19 -1.61 16 23 C -0.14 -1.62 8.17 -26.19 -0.21 -1.83 16 24 C -0.11 -1.24 7.96 -27.40 -0.22 -1.46 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.70 6.82 -51.93 -0.35 0.35 16 27 H 0.08 1.82 4.89 -51.93 -0.25 1.56 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.41 8.05 7.37 -40.82 -0.30 7.75 16 35 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 36 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -30.57 323.02 -7.50 -38.07 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.27 Total: 9.40 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.76 Total: 3.08 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.08 Total: -52.65 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.30 Total: -19.62 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.13 Total: 16.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.57 -7.50 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484594154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.446 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds