Wall clock time and date at job start Tue Mar 31 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99966 * 2 1 4 4 H 1.48494 * 109.47137 * 268.95185 * 3 2 1 5 5 H 1.48498 * 109.47502 * 28.95688 * 3 2 1 6 6 H 1.48502 * 109.46872 * 148.95476 * 3 2 1 7 7 C 1.38813 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99977 * 343.19090 * 7 2 1 9 9 N 1.36935 * 120.00107 * 163.18981 * 7 2 1 10 10 C 1.47154 * 120.98073 * 329.50939 * 9 7 2 11 11 C 1.53293 * 108.38298 * 230.55552 * 10 9 7 12 12 O 1.42955 * 109.22458 * 307.69952 * 11 10 9 13 13 C 1.42966 * 114.16799 * 62.58092 * 12 11 10 14 14 C 1.47158 * 120.98238 * 149.53260 * 9 7 2 15 15 H 1.09003 * 109.67884 * 249.16819 * 14 9 7 16 16 C 1.52998 * 109.70930 * 9.70040 * 14 9 7 17 17 N 1.46494 * 109.47630 * 298.59200 * 16 14 9 18 18 C 1.34776 * 120.00266 * 180.02562 * 17 16 14 19 19 O 1.21606 * 120.00154 * 0.02562 * 18 17 16 20 20 C 1.47101 * 119.99866 * 180.02562 * 18 17 16 21 21 C 1.32997 * 120.00039 * 179.97438 * 20 18 17 22 22 C 1.51404 * 136.31370 * 359.63490 * 21 20 18 23 23 C 1.53374 * 87.51938 * 206.05095 * 22 21 20 24 24 C 1.51401 * 136.31958 * 179.97438 * 21 20 18 25 25 H 0.96999 * 119.99894 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.67557 * 110.83474 * 10 9 7 27 27 H 1.08999 * 109.71233 * 350.29820 * 10 9 7 28 28 H 1.09002 * 109.51211 * 187.77703 * 11 10 9 29 29 H 1.09002 * 109.51376 * 67.62365 * 11 10 9 30 30 H 1.08999 * 109.51118 * 177.49571 * 13 12 11 31 31 H 1.08993 * 109.55339 * 57.36919 * 13 12 11 32 32 H 1.08999 * 109.47409 * 58.60277 * 16 14 9 33 33 H 1.09005 * 109.47101 * 178.59406 * 16 14 9 34 34 H 0.96998 * 119.99567 * 0.02562 * 17 16 14 35 35 H 1.08003 * 120.00445 * 0.02562 * 20 18 17 36 36 H 1.09004 * 113.56328 * 320.63404 * 22 21 20 37 37 H 1.08999 * 113.56223 * 91.36607 * 22 21 20 38 38 H 1.09005 * 113.97131 * 220.29241 * 23 22 21 39 39 H 1.08996 * 113.71056 * 88.80318 * 23 22 21 40 40 H 1.08996 * 113.56742 * 268.63421 * 24 21 20 41 41 H 1.09000 * 113.55830 * 39.37298 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5199 2.0336 -1.3998 5 1 1.4368 2.6589 0.6778 6 1 3.5365 1.4466 0.7221 7 6 2.0103 -1.2022 0.0005 8 1 1.5048 -2.1174 0.2714 9 7 3.3357 -1.2277 -0.3424 10 6 3.8885 -0.2592 -1.3025 11 6 4.6732 -1.0306 -2.3698 12 8 5.6131 -1.8965 -1.7291 13 6 5.0163 -2.9004 -0.9045 14 6 4.2493 -2.2248 0.2379 15 1 4.9513 -1.7318 0.9105 16 6 3.4458 -3.2732 1.0100 17 7 2.7214 -2.6241 2.1054 18 6 1.9424 -3.3568 2.9257 19 8 1.8413 -4.5568 2.7568 20 6 1.2146 -2.7049 4.0253 21 6 0.4456 -3.4278 4.8345 22 6 0.0556 -4.8852 4.9613 23 6 -1.2348 -4.4118 5.6417 24 6 -0.4355 -3.1597 6.0362 25 1 -0.4850 0.8400 0.0004 26 1 4.5542 0.4315 -0.7850 27 1 3.0771 0.2960 -1.7731 28 1 5.2046 -0.3269 -3.0106 29 1 3.9839 -1.6230 -2.9714 30 1 5.7946 -3.5418 -0.4910 31 1 4.3284 -3.5002 -1.5001 32 1 2.7344 -3.7531 0.3379 33 1 4.1238 -4.0233 1.4170 34 1 2.8023 -1.6670 2.2403 35 1 1.3041 -1.6390 4.1751 36 1 -0.1138 -5.3759 4.0028 37 1 0.7110 -5.4560 5.6192 38 1 -1.5390 -5.0252 6.4899 39 1 -2.0498 -4.2129 4.9458 40 1 0.0851 -3.2574 6.9888 41 1 -1.0078 -2.2353 5.9592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484594154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:39 Heat of formation + Delta-G solvation = -26.831541 kcal Electronic energy + Delta-G solvation = -22706.231461 eV Core-core repulsion = 19394.712227 eV Total energy + Delta-G solvation = -3311.519234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96246 -40.17444 -39.11764 -36.98577 -35.30125 -33.61748 -32.75793 -31.54856 -29.23867 -27.13020 -26.63509 -25.22841 -24.34616 -23.42213 -21.63085 -21.42347 -19.37327 -18.57976 -17.84131 -17.66993 -17.25879 -16.74623 -16.60656 -16.34996 -16.04323 -15.59115 -15.47286 -15.41835 -15.04688 -14.58349 -14.42639 -13.86601 -13.47190 -13.31447 -13.17623 -12.88172 -12.82418 -12.61663 -12.34468 -12.31513 -12.04546 -11.88017 -11.56365 -11.47636 -11.33857 -11.07469 -10.65636 -10.48190 -10.21323 -9.73565 -8.85931 -8.11549 -5.51414 0.46144 1.30965 1.42706 1.50477 2.29593 2.42723 2.50755 2.87318 3.03587 3.22479 3.48893 3.60683 3.84317 3.93653 4.09514 4.19705 4.25754 4.27142 4.32472 4.39512 4.47295 4.60019 4.64591 4.69606 4.70343 4.74785 4.85788 4.90776 4.92911 4.96580 5.04352 5.20159 5.30385 5.39445 5.62476 5.71427 5.86832 6.18625 6.20938 6.74488 6.85955 7.39367 7.58489 7.99117 9.06374 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.005549 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.447804 B = 5044.581915 C = 6160.618019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.024 4.024 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.316 1.316 6 H -0.260 1.260 7 C -0.236 4.236 8 H 0.063 0.937 9 N -0.619 5.619 10 C 0.084 3.916 11 C 0.053 3.947 12 O -0.389 6.389 13 C 0.057 3.943 14 C 0.128 3.872 15 H 0.058 0.942 16 C 0.142 3.858 17 N -0.693 5.693 18 C 0.541 3.459 19 O -0.595 6.595 20 C -0.213 4.213 21 C -0.079 4.079 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.096 4.096 25 H 0.260 0.740 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.048 0.952 30 H 0.125 0.875 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.138 0.862 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 -4.225 8.030 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.220 4.220 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.245 1.245 6 H -0.185 1.185 7 C -0.365 4.365 8 H 0.081 0.919 9 N -0.347 5.347 10 C -0.041 4.041 11 C -0.025 4.025 12 O -0.307 6.307 13 C -0.021 4.021 14 C 0.023 3.977 15 H 0.075 0.925 16 C 0.018 3.982 17 N -0.342 5.342 18 C 0.332 3.668 19 O -0.480 6.480 20 C -0.233 4.233 21 C -0.081 4.081 22 C -0.147 4.147 23 C -0.168 4.168 24 C -0.132 4.132 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.156 0.844 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.977 -4.950 7.861 11.046 hybrid contribution -0.451 1.598 -0.421 1.713 sum 5.526 -3.352 7.440 9.855 Atomic orbital electron populations 1.69944 1.07356 1.26938 1.55580 1.25854 0.95562 1.00421 1.00115 0.86041 0.78437 0.80711 0.77737 1.20463 1.24530 1.18470 1.18774 0.84092 0.93331 1.40313 0.91891 1.44562 1.05768 1.36342 1.47990 1.22131 0.97095 0.92959 0.91878 1.23038 0.92191 0.93337 0.93960 1.87838 1.33433 1.45724 1.63738 1.22996 0.98026 0.89743 0.91347 1.21633 0.91573 0.90051 0.94462 0.92469 1.21090 0.94443 0.94591 0.88084 1.45833 1.46777 1.12117 1.29481 1.18784 0.79085 0.86318 0.82654 1.90658 1.66159 1.16073 1.75086 1.21652 1.02683 1.00663 0.98326 1.23923 0.90203 0.98763 0.95187 1.22296 0.97805 0.93391 1.01232 1.22692 0.95449 0.97430 1.01250 1.22417 0.95503 0.99670 0.95623 0.93132 0.94282 0.91805 0.86502 0.93412 0.85741 0.93417 0.94162 0.89833 0.75474 0.84418 0.92725 0.87221 0.87593 0.90583 0.85597 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 13.97 21.65 0.30 -56.88 16 2 C -0.02 -1.31 5.28 84.86 0.45 -0.87 16 3 Si 0.94 43.73 24.28 68.60 1.67 45.40 16 4 H -0.28 -12.34 6.54 99.48 0.65 -11.69 16 5 H -0.32 -15.26 7.11 99.48 0.71 -14.55 16 6 H -0.26 -11.47 6.65 99.48 0.66 -10.81 16 7 C -0.24 -12.21 7.59 84.03 0.64 -11.57 16 8 H 0.06 3.69 5.99 -2.91 -0.02 3.67 16 9 N -0.62 -26.81 2.78 -673.72 -1.87 -28.69 16 10 C 0.08 3.34 4.38 86.35 0.38 3.72 16 11 C 0.05 1.72 6.98 72.08 0.50 2.23 16 12 O -0.39 -12.68 10.74 -148.98 -1.60 -14.28 16 13 C 0.06 1.75 6.29 72.08 0.45 2.20 16 14 C 0.13 4.58 3.20 44.96 0.14 4.72 16 15 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.14 5.27 4.44 86.38 0.38 5.65 16 17 N -0.69 -27.42 3.80 -466.73 -1.77 -29.19 16 18 C 0.54 22.17 7.76 86.57 0.67 22.84 16 19 O -0.60 -27.06 15.15 -4.05 -0.06 -27.12 16 20 C -0.21 -7.47 10.03 23.43 0.23 -7.23 16 21 C -0.08 -2.36 6.93 -17.17 -0.12 -2.48 16 22 C -0.11 -3.01 6.99 30.06 0.21 -2.80 16 23 C -0.13 -2.67 8.17 30.95 0.25 -2.42 16 24 C -0.10 -1.96 7.96 30.16 0.24 -1.72 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.04 1.53 6.82 -2.39 -0.02 1.51 16 27 H 0.06 2.77 4.89 -2.39 -0.01 2.75 16 28 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.72 7.52 -2.39 -0.02 1.71 16 33 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.41 16.37 7.37 -92.71 -0.68 15.69 16 35 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.05 1.83 7.49 -2.38 -0.02 1.81 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.20 323.02 1.35 -66.85 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.25 Total: 31.65 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 4.44 Total: 12.27 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.34 Total: -114.76 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.66 Total: -41.41 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.67 Total: 45.40 kcal Total: -68.20 1.35 -66.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484594154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.019 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds